Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0017377

Physical Location & Seq

Genomic Coordinates Forward (+)

1194263 .. 1198111

Gene Structure 3849 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ21994

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGGCCCTGCTCTTCATCCATTCCTTGTGAGATCATATACCGAAGTTCTTAAGGATTTCTTTGAGAGGACATTGCTTTCCAGTCAAAAGATATTTTCTACTGCAGAGAGATATGAAAAGATCTTAGATATGATTCCTGATGAATCTGTCACTTCTGAGCTTCGGGGAAAGTGGCAAGATAATAGACGAACCTCCAATGCAAAAGAAGACATTAATGTTGCTCGTTGGGAGCAGCTGAAACATATGCTGCAATCTGGGAAACAGAAGGAGATTGTGTTCTCTTATACGTACCCTAGACTTGACATGGAGGTTTCAAAACATATGAACCATTTATTAAAGGCACCATTCTGTGTACATCCAAAGACAGGTCGTGTTTGTGTTCCGATTGATCCCAACCGTTGTGAGGAGTTTGATCCTACTGCAGTTCCAACCCTTTCCACTCTTATTGAAGAACTTAATAATGAGGGTTTGAGAGCAGAGGCTGATAACGAACAGGATAGAACGTCACTTGGAAAATCAATAAGATTCTTCCAATCATCATTTTTGGAGCCTTTGGTAAAATCTTGCAAGGAGGAGATGATAAGTTCCTACAATGCGAAACTGCAGCAGTCGAAGTTGCAGCAGTCAAAGAACGTGCTTGCTGCAATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000428 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003824 GO:0003896 GO:0003899 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005658 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006269 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0030894 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0032993 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0043601 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0055029 GO:0061695 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:0097747 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03030 map00230 map00240 map01100 map03030

Pfam Domains

Protein Families

DNA_primase_S

Protein Analysis

216

Amino Acids

24.91

Weight (kDa)

6.97

Isoelectric Point (pI)

52.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_primase_S	PF01896	4 - 130	2.2e-17	DNA primase small subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0017377)

Species	Orthologous Gene IDs
malus_domestica	MD06G1072700.v1.1 MD14G1127600.v1.1
pyrus_communis	pycom16g19580
rosa_chinensis	RchiOBHm_Chr6g0245391
rosa_laevigata	RLG00000008502 RLG00000036015
rosa_multiflora	Rmu_sc0009380.1_g000010 Rmu_sc0030772.1_g000001
rosa_rugosa	Rorug05G0394000
rosa_samantha	Rh6BG026300 Rh6CG025000 Rh7DG148900
rosa_wichuraiana	Rw2G021700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	340
AclWI	GGATC	2 cut(s)	383, 407
AfaI	GTAC	2 cut(s)	290, 354
AfiI	CCNNNNNNNGG	2 cut(s)	365, 403
AflII	CTTAAG	1 cut(s)	50
AgsI	TTSAA	2 cut(s)	315, 449
AloI	GAACNNNNNNTCC	2 cut(s)	260, 292
AluBI	AGCT	2 cut(s)	160, 235
AluI	AGCT	2 cut(s)	160, 235
AlwI	GGATC	2 cut(s)	383, 407
AlwNI	CAGNNNCTG	1 cut(s)	482
AoxI	GGCC	1 cut(s)	4
ApaI	GGGCCC	1 cut(s)	8
ApeKI	GCWGC	5 cut(s)	232, 247, 604, 619, 641
AseI	ATTAAT	1 cut(s)	213
AspS9I	GGNCC	2 cut(s)	4, 5
BaeGI	GKGCMC	1 cut(s)	8
BanI	GGYRCC	1 cut(s)	340
BanII	GRGCYC	1 cut(s)	8
BbsI	GAAGAC	1 cut(s)	213
BbvI	GCAGC	5 cut(s)	234, 244, 616, 628, 631
BfaI	CTAG	2 cut(s)	294, 649
BfmI	CTRYAG	3 cut(s)	102, 420, 602
BfrI	CTTAAG	1 cut(s)	50
BglII	AGATCT	1 cut(s)	120
BisI	GCNGC	5 cut(s)	233, 248, 605, 620, 642
BlsI	GCNGC	5 cut(s)	234, 249, 606, 621, 643
BmgT120I	GGNCC	2 cut(s)	4, 5
BmiI	GGNNCC	3 cut(s)	6, 342, 549
BpiI	GAAGAC	1 cut(s)	213
BsaAI	YACGTR	1 cut(s)	288
BsaXI	ACNNNNNCTCC	2 cut(s)	260, 290
Bsc4I	CCNNNNNNNGG	2 cut(s)	365, 403
Bse1I	ACTGG	1 cut(s)	81
Bse3DI	GCAATG	1 cut(s)	71
BseGI	GGATG	2 cut(s)	16, 355
BseLI	CCNNNNNNNGG	2 cut(s)	365, 403
BseMI	GCAATG	1 cut(s)	71
BseMII	CTCAG	1 cut(s)	147
BseNI	ACTGG	1 cut(s)	81
BseRI	GAGGAG	2 cut(s)	419, 587
BseSI	GKGCMC	1 cut(s)	8
BseXI	GCAGC	5 cut(s)	234, 244, 616, 628, 631
BshFI	GGCC	1 cut(s)	6
BshNI	GGYRCC	1 cut(s)	340
BslI	CCNNNNNNNGG	2 cut(s)	365, 403
BsnI	GGCC	1 cut(s)	6
Bsp120I	GGGCCC	1 cut(s)	4
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp1407I	TGTACA	1 cut(s)	352
Bsp143I	GATC	4 cut(s)	32, 120, 388, 412
BspANI	GGCC	1 cut(s)	6
BspCNI	CTCAG	1 cut(s)	148
BspLI	GGNNCC	3 cut(s)	6, 342, 549
BspMAI	CTGCAG	3 cut(s)	106, 424, 606
BspPI	GGATC	2 cut(s)	383, 407
BspQI	GCTCTTC	1 cut(s)	18
BspT107I	GGYRCC	1 cut(s)	340
BspTI	CTTAAG	1 cut(s)	50
BsrDI	GCAATG	1 cut(s)	71
BsrGI	TGTACA	1 cut(s)	352
BsrI	ACTGG	1 cut(s)	81
BssMI	GATC	4 cut(s)	32, 120, 388, 412
Bst4CI	ACNGT	1 cut(s)	398
Bst6I	CTCTTC	1 cut(s)	18
BstAFI	CTTAAG	1 cut(s)	50
BstAUI	TGTACA	1 cut(s)	352
BstBAI	YACGTR	1 cut(s)	288
BstC8I	GCNNGC	1 cut(s)	639
BstDEI	CTNAG	2 cut(s)	124, 156
BstF5I	GGATG	2 cut(s)	16, 355
BstKTI	GATC	4 cut(s)	35, 123, 391, 415
BstMBI	GATC	4 cut(s)	32, 120, 388, 412
BstSFI	CTRYAG	3 cut(s)	102, 420, 602
BstSLI	GKGCMC	1 cut(s)	8
BstSNI	TACGTA	1 cut(s)	288
BstV1I	GCAGC	5 cut(s)	234, 244, 616, 628, 631
BstV2I	GAAGAC	1 cut(s)	213
BstX2I	RGATCY	1 cut(s)	120
BstYI	RGATCY	1 cut(s)	120
BsuRI	GGCC	1 cut(s)	6
BtsCI	GGATG	2 cut(s)	16, 355
Cac8I	GCNNGC	1 cut(s)	639
CaiI	CAGNNNCTG	1 cut(s)	482
Cfr13I	GGNCC	2 cut(s)	4, 5
Csp6I	GTAC	2 cut(s)	289, 353
CspCI	CAANNNNNGTGG	2 cut(s)	427, 462
CviAII	CATG	1 cut(s)	304
CviJI	RGCY	5 cut(s)	6, 160, 235, 482, 550
CviKI_1	RGCY	5 cut(s)	6, 160, 235, 482, 550
CviQI	GTAC	2 cut(s)	289, 353
DdeI	CTNAG	2 cut(s)	124, 156
DpnI	GATC	4 cut(s)	34, 122, 390, 414
DpnII	GATC	4 cut(s)	32, 120, 388, 412
Eam1104I	CTCTTC	1 cut(s)	18
EarI	CTCTTC	1 cut(s)	18
Eco105I	TACGTA	1 cut(s)	288
Eco24I	GRGCYC	1 cut(s)	8
EcoO109I	RGGNCCY	1 cut(s)	5
EcoT38I	GRGCYC	1 cut(s)	8
FaeI	CATG	1 cut(s)	307
FalI	AAGNNNNNCTT	2 cut(s)	44, 76
FatI	CATG	1 cut(s)	303
FauNDI	CATATG	2 cut(s)	243, 321
Fnu4HI	GCNGC	5 cut(s)	233, 248, 605, 620, 642
FokI	GGATG	2 cut(s)	3, 342
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	5 cut(s)	233, 248, 605, 620, 642
FspBI	CTAG	2 cut(s)	294, 649
GluI	GCNGC	5 cut(s)	233, 248, 605, 620, 642
HaeIII	GGCC	1 cut(s)	6
Hin1II	CATG	1 cut(s)	307
HinfI	GANTC	3 cut(s)	133, 143, 525
Hpy166II	GTNNAC	1 cut(s)	353
Hpy188I	TCNGA	2 cut(s)	157, 384
Hpy188III	TCNNGA	1 cut(s)	137
Hpy8I	GTNNAC	1 cut(s)	353
HpyAV	CCTTC	1 cut(s)	259
HpyCH4III	ACNGT	1 cut(s)	398
HpyCH4IV	ACGT	3 cut(s)	287, 503, 633
HpyCH4V	TGCA	8 cut(s)	104, 200, 250, 422, 567, 604, 619, 644
HpyF3I	CTNAG	2 cut(s)	124, 156
HpySE526I	ACGT	3 cut(s)	287, 503, 633
Hsp92II	CATG	1 cut(s)	307
Kzo9I	GATC	4 cut(s)	32, 120, 388, 412
LguI	GCTCTTC	1 cut(s)	18
LmnI	GCTCC	2 cut(s)	229, 547
LpnPI	CCDG	6 cut(s)	21, 94, 150, 240, 351, 479
Lsp1109I	GCAGC	5 cut(s)	234, 244, 616, 628, 631
MaeI	CTAG	2 cut(s)	294, 649
MaeII	ACGT	3 cut(s)	287, 503, 633
MaeIII	GTNAC	2 cut(s)	148, 504
MalI	GATC	4 cut(s)	34, 122, 390, 414
MboI	GATC	4 cut(s)	32, 120, 388, 412
MboII	GAAGA	4 cut(s)	5, 218, 461, 520
MflI	RGATCY	1 cut(s)	120
MhlI	GDGCHC	1 cut(s)	8
MmeI	TCCRAC	1 cut(s)	452
MnlI	CCTC	7 cut(s)	60, 202, 301, 397, 457, 472, 565
MseI	TTAA	4 cut(s)	51, 213, 335, 456
MspA1I	CMGCKG	1 cut(s)	235
MspCI	CTTAAG	1 cut(s)	50
NdeI	CATATG	2 cut(s)	243, 321
NdeII	GATC	4 cut(s)	32, 120, 388, 412
NlaIII	CATG	1 cut(s)	307
NlaIV	GGNNCC	3 cut(s)	6, 342, 549
NmuCI	GTSAC	2 cut(s)	148, 504
PciSI	GCTCTTC	1 cut(s)	18
PfeI	GAWTC	3 cut(s)	133, 143, 525
PkrI	GCNGC	5 cut(s)	234, 249, 606, 621, 643
Ppu21I	YACGTR	1 cut(s)	288
PshBI	ATTAAT	1 cut(s)	213
PspN4I	GGNNCC	3 cut(s)	6, 342, 549
PspOMI	GGGCCC	1 cut(s)	4
PspPI	GGNCC	2 cut(s)	4, 5
PstI	CTGCAG	3 cut(s)	106, 424, 606
PstNI	CAGNNNCTG	1 cut(s)	482
PsuI	RGATCY	1 cut(s)	120
PvuII	CAGCTG	1 cut(s)	235
RsaI	GTAC	2 cut(s)	290, 354
RsaNI	GTAC	2 cut(s)	289, 353
SapI	GCTCTTC	1 cut(s)	18
SaqAI	TTAA	4 cut(s)	51, 213, 335, 456
SatI	GCNGC	5 cut(s)	233, 248, 605, 620, 642
Sau3AI	GATC	4 cut(s)	32, 120, 388, 412
Sau96I	GGNCC	2 cut(s)	4, 5
SduI	GDGCHC	1 cut(s)	8
SetI	ASST	8 cut(s)	162, 194, 237, 290, 312, 370, 506, 636
SfcI	CTRYAG	3 cut(s)	102, 420, 602
SmlI	CTYRAG	1 cut(s)	50
SmoI	CTYRAG	1 cut(s)	50
SnaBI	TACGTA	1 cut(s)	288
SspMI	CTAG	2 cut(s)	294, 649
TaaI	ACNGT	1 cut(s)	398
TaiI	ACGT	3 cut(s)	290, 506, 636
TaqI	TCGA	1 cut(s)	611
TatI	WGTACW	1 cut(s)	352
TfiI	GAWTC	3 cut(s)	133, 143, 525
Tru1I	TTAA	4 cut(s)	51, 213, 335, 456
Tru9I	TTAA	4 cut(s)	51, 213, 335, 456
TseFI	GTSAC	2 cut(s)	148, 504
TseI	GCWGC	5 cut(s)	232, 247, 604, 619, 641
Tsp45I	GTSAC	2 cut(s)	148, 504
TspDTI	ATGAA	4 cut(s)	5, 129, 156, 338
Vha464I	CTTAAG	1 cut(s)	50
VspI	ATTAAT	1 cut(s)	213
XspI	CTAG	2 cut(s)	294, 649

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.