Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009380.1

Orthogroup ID

OG0017377

Physical Location & Seq

Genomic Coordinates Reverse (-)

34491 .. 36390

Gene Structure 1900 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009380.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

atgcaaggactgcgtagatgtgtggaggagattgtgttctcttatacctaccctagacttgacatggaggtttcaaaacatatgaaccatttattaaaggcaccattctgtgtacatccaaagacagattgctctattgatagtttctttgttctaggtcgtgtttgtgttccgattgatcccaaccgttgtgaggagtttgatcctactgcagttccaaccctttccactatgattccaagcattcatgtagatgttttacattgccttttcattctggttcttaacatgagctatgttacttgccaatgcaatctattgtcttctgagatttgtggtctcttacatggttatgtggaatttctgcttattgaagaacttaataatgagggtttgagagcagaggctgataacggaggagatgataagttcctacaatgcgaaactgcagcagtcgaagttgcagcagtcaaagaacgtgcttgctgcaatctagttcatctttgtggtatccaactttcaggactcgtttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000428 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003824 GO:0003896 GO:0003899 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005658 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006269 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0030894 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0032993 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0043601 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0055029 GO:0061695 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:0097747 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03030 map00230 map00240 map01100 map03030

Pfam Domains

Protein Families

DNA_primase_S

Protein Analysis

177

Amino Acids

19.72

Weight (kDa)

4.93

Isoelectric Point (pI)

36.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017377)

Species	Orthologous Gene IDs
malus_domestica	MD06G1072700.v1.1 MD14G1127600.v1.1
pyrus_communis	pycom16g19580
rosa_chinensis	RchiOBHm_Chr6g0245391
rosa_laevigata	RLG00000008502 RLG00000036015
rosa_multiflora	Rmu_sc0009380.1_g000010 Rmu_sc0030772.1_g000001
rosa_rugosa	Rorug05G0394000
rosa_samantha	Rh6BG026300 Rh6CG025000 Rh7DG148900
rosa_wichuraiana	Rw2G021700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	100
AclWI	GGATC	2 cut(s)	173, 197
AcsI	RAATTY	1 cut(s)	359
AfaI	GTAC	1 cut(s)	114
AfiI	CCNNNNNNNGG	1 cut(s)	193
AgsI	TTSAA	2 cut(s)	75, 374
AloI	GAACNNNNNNTCC	2 cut(s)	20, 52
AluBI	AGCT	1 cut(s)	294
AluI	AGCT	1 cut(s)	294
Alw26I	GTCTC	1 cut(s)	344
AlwI	GGATC	2 cut(s)	173, 197
AlwNI	CAGNNNCTG	1 cut(s)	407
ApeKI	GCWGC	3 cut(s)	449, 464, 486
ApoI	RAATTY	1 cut(s)	359
BanI	GGYRCC	1 cut(s)	100
BbsI	GAAGAC	1 cut(s)	315
BbvI	GCAGC	3 cut(s)	461, 473, 476
BciVI	GTATCC	1 cut(s)	521
BcoDI	GTCTC	1 cut(s)	344
BfaI	CTAG	3 cut(s)	54, 155, 494
BfmI	CTRYAG	2 cut(s)	210, 447
BfuI	GTATCC	1 cut(s)	521
BisI	GCNGC	3 cut(s)	450, 465, 487
BlsI	GCNGC	3 cut(s)	451, 466, 488
BmiI	GGNNCC	1 cut(s)	102
BpiI	GAAGAC	1 cut(s)	315
BsaI	GGTCTC	1 cut(s)	344
BsaXI	ACNNNNNCTCC	2 cut(s)	20, 50
Bsc4I	CCNNNNNNNGG	1 cut(s)	193
Bse3DI	GCAATG	1 cut(s)	262
BseGI	GGATG	1 cut(s)	115
BseLI	CCNNNNNNNGG	1 cut(s)	193
BseMI	GCAATG	1 cut(s)	262
BseMII	CTCAG	1 cut(s)	318
BseRI	GAGGAG	3 cut(s)	41, 209, 432
BseXI	GCAGC	3 cut(s)	461, 473, 476
BshNI	GGYRCC	1 cut(s)	100
BslI	CCNNNNNNNGG	1 cut(s)	193
BsmAI	GTCTC	1 cut(s)	344
BsmI	GAATGC	1 cut(s)	243
Bso31I	GGTCTC	1 cut(s)	344
Bsp1407I	TGTACA	1 cut(s)	112
Bsp143I	GATC	2 cut(s)	178, 202
BspCNI	CTCAG	1 cut(s)	319
BspLI	GGNNCC	1 cut(s)	102
BspMAI	CTGCAG	2 cut(s)	214, 451
BspPI	GGATC	2 cut(s)	173, 197
BspT107I	GGYRCC	1 cut(s)	100
BspTNI	GGTCTC	1 cut(s)	344
BsrDI	GCAATG	1 cut(s)	262
BsrGI	TGTACA	1 cut(s)	112
BssMI	GATC	2 cut(s)	178, 202
Bst4CI	ACNGT	1 cut(s)	188
BstAPI	GCANNNNNTGC	1 cut(s)	10
BstAUI	TGTACA	1 cut(s)	112
BstC8I	GCNNGC	1 cut(s)	484
BstDEI	CTNAG	1 cut(s)	327
BstF5I	GGATG	1 cut(s)	115
BstKTI	GATC	2 cut(s)	181, 205
BstMAI	GTCTC	1 cut(s)	344
BstMBI	GATC	2 cut(s)	178, 202
BstMWI	GCNNNNNNNGC	1 cut(s)	10
BstSFI	CTRYAG	2 cut(s)	210, 447
BstV1I	GCAGC	3 cut(s)	461, 473, 476
BstV2I	GAAGAC	1 cut(s)	315
BsuI	GTATCC	1 cut(s)	521
BtsCI	GGATG	1 cut(s)	115
Cac8I	GCNNGC	1 cut(s)	484
CaiI	CAGNNNCTG	1 cut(s)	407
Csp6I	GTAC	1 cut(s)	113
CviAII	CATG	4 cut(s)	64, 248, 289, 347
CviJI	RGCY	2 cut(s)	294, 407
CviKI_1	RGCY	2 cut(s)	294, 407
CviQI	GTAC	1 cut(s)	113
DdeI	CTNAG	1 cut(s)	327
DpnI	GATC	2 cut(s)	180, 204
DpnII	GATC	2 cut(s)	178, 202
Eco31I	GGTCTC	1 cut(s)	344
FaeI	CATG	4 cut(s)	67, 251, 292, 350
FatI	CATG	4 cut(s)	63, 247, 288, 346
FauNDI	CATATG	1 cut(s)	81
Fnu4HI	GCNGC	3 cut(s)	450, 465, 487
FokI	GGATG	1 cut(s)	102
Fsp4HI	GCNGC	3 cut(s)	450, 465, 487
FspBI	CTAG	3 cut(s)	54, 155, 494
GluI	GCNGC	3 cut(s)	450, 465, 487
Hin1II	CATG	4 cut(s)	67, 251, 292, 350
HinfI	GANTC	2 cut(s)	235, 525
Hpy166II	GTNNAC	1 cut(s)	113
Hpy188I	TCNGA	2 cut(s)	174, 328
Hpy188III	TCNNGA	1 cut(s)	522
Hpy8I	GTNNAC	1 cut(s)	113
HpyCH4III	ACNGT	1 cut(s)	188
HpyCH4IV	ACGT	1 cut(s)	478
HpyCH4V	TGCA	6 cut(s)	4, 212, 312, 449, 464, 489
HpyF10VI	GCNNNNNNNGC	1 cut(s)	10
HpyF3I	CTNAG	1 cut(s)	327
HpySE526I	ACGT	1 cut(s)	478
Hsp92II	CATG	4 cut(s)	67, 251, 292, 350
Kzo9I	GATC	2 cut(s)	178, 202
LpnPI	CCDG	2 cut(s)	263, 507
Lsp1109I	GCAGC	3 cut(s)	461, 473, 476
MaeI	CTAG	3 cut(s)	54, 155, 494
MaeII	ACGT	1 cut(s)	478
MaeIII	GTNAC	1 cut(s)	298
MalI	GATC	2 cut(s)	180, 204
MboI	GATC	2 cut(s)	178, 202
MboII	GAAGA	2 cut(s)	315, 386
MluCI	AATT	1 cut(s)	359
MlyI	GAGTC	1 cut(s)	519
MmeI	TCCRAC	1 cut(s)	242
MnlI	CCTC	6 cut(s)	19, 61, 187, 382, 397, 410
MseI	TTAA	3 cut(s)	95, 285, 381
MslI	CAYNNNNRTG	3 cut(s)	252, 351, 504
Mva1269I	GAATGC	1 cut(s)	243
MwoI	GCNNNNNNNGC	1 cut(s)	10
NdeI	CATATG	1 cut(s)	81
NdeII	GATC	2 cut(s)	178, 202
NlaIII	CATG	4 cut(s)	67, 251, 292, 350
NlaIV	GGNNCC	1 cut(s)	102
PctI	GAATGC	1 cut(s)	243
PfeI	GAWTC	1 cut(s)	235
PkrI	GCNGC	3 cut(s)	451, 466, 488
PleI	GAGTC	1 cut(s)	519
PpsI	GAGTC	1 cut(s)	519
PspN4I	GGNNCC	1 cut(s)	102
PstI	CTGCAG	2 cut(s)	214, 451
PstNI	CAGNNNCTG	1 cut(s)	407
RsaI	GTAC	1 cut(s)	114
RsaNI	GTAC	1 cut(s)	113
RseI	CAYNNNNRTG	3 cut(s)	252, 351, 504
SaqAI	TTAA	3 cut(s)	95, 285, 381
SatI	GCNGC	3 cut(s)	450, 465, 487
Sau3AI	GATC	2 cut(s)	178, 202
SchI	GAGTC	1 cut(s)	519
SetI	ASST	5 cut(s)	50, 72, 160, 296, 481
SfcI	CTRYAG	2 cut(s)	210, 447
SmiMI	CAYNNNNRTG	3 cut(s)	252, 351, 504
Sse9I	AATT	1 cut(s)	359
SspMI	CTAG	3 cut(s)	54, 155, 494
TaaI	ACNGT	1 cut(s)	188
TaiI	ACGT	1 cut(s)	481
TaqI	TCGA	1 cut(s)	456
TasI	AATT	1 cut(s)	359
TatI	WGTACW	1 cut(s)	112
TfiI	GAWTC	1 cut(s)	235
Tru1I	TTAA	3 cut(s)	95, 285, 381
Tru9I	TTAA	3 cut(s)	95, 285, 381
TseI	GCWGC	3 cut(s)	449, 464, 486
TspDTI	ATGAA	4 cut(s)	98, 236, 262, 488
TspGWI	ACGGA	1 cut(s)	429
XapI	RAATTY	1 cut(s)	359
XspI	CTAG	3 cut(s)	54, 155, 494

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.