Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0030772.1

Orthogroup ID

OG0017377

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 501

Gene Structure 501 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0030772.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 271 bp

aaagatattttctactgcagagagatatgaaaagatcttagatatgattcctgatgaatctgtcacttctgagcttcggggaaagtggcaagataatagacgaacctccaatgcaaaagaagacattaatgttgctcgttgggagcagctgaaacatttgctgcaatctgggaaacagaagatgcaaggactgcgtagatgtgtggaggagattgtgttctcttatacctaccctagacttgacatggaggtttgcacgacaaccccctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000428 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003824 GO:0003896 GO:0003899 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005658 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006269 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0030894 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0032993 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0043601 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0055029 GO:0061695 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:0097747 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03030 map00230 map00240 map01100 map03030

Pfam Domains

Protein Families

DNA_primase_S

Protein Analysis

89

Amino Acids

10.54

Weight (kDa)

7.97

Isoelectric Point (pI)

58.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017377)

Species	Orthologous Gene IDs
malus_domestica	MD06G1072700.v1.1 MD14G1127600.v1.1
pyrus_communis	pycom16g19580
rosa_chinensis	RchiOBHm_Chr6g0245391
rosa_laevigata	RLG00000008502 RLG00000036015
rosa_multiflora	Rmu_sc0009380.1_g000010 Rmu_sc0030772.1_g000001
rosa_rugosa	Rorug05G0394000
rosa_samantha	Rh6BG026300 Rh6CG025000 Rh7DG148900
rosa_wichuraiana	Rw2G021700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AloI	GAACNNNNNNTCC	2 cut(s)	201, 233
AluBI	AGCT	2 cut(s)	74, 149
AluI	AGCT	2 cut(s)	74, 149
ApeKI	GCWGC	2 cut(s)	146, 161
AseI	ATTAAT	1 cut(s)	127
BbsI	GAAGAC	1 cut(s)	127
BbvI	GCAGC	2 cut(s)	148, 158
BfaI	CTAG	1 cut(s)	235
BfmI	CTRYAG	1 cut(s)	16
BglII	AGATCT	1 cut(s)	34
BisI	GCNGC	2 cut(s)	147, 162
BlsI	GCNGC	2 cut(s)	148, 163
BmsI	GCATC	1 cut(s)	172
BpiI	GAAGAC	1 cut(s)	127
BsaXI	ACNNNNNCTCC	2 cut(s)	201, 231
BseMII	CTCAG	1 cut(s)	61
BseRI	GAGGAG	1 cut(s)	222
BseXI	GCAGC	2 cut(s)	148, 158
Bsp143I	GATC	1 cut(s)	34
BspCNI	CTCAG	1 cut(s)	62
BspMAI	CTGCAG	1 cut(s)	20
BssMI	GATC	1 cut(s)	34
BstAPI	GCANNNNNTGC	1 cut(s)	191
BstDEI	CTNAG	2 cut(s)	38, 70
BstKTI	GATC	1 cut(s)	37
BstMBI	GATC	1 cut(s)	34
BstMWI	GCNNNNNNNGC	1 cut(s)	191
BstSFI	CTRYAG	1 cut(s)	16
BstV1I	GCAGC	2 cut(s)	148, 158
BstV2I	GAAGAC	1 cut(s)	127
BstX2I	RGATCY	1 cut(s)	34
BstYI	RGATCY	1 cut(s)	34
CviAII	CATG	1 cut(s)	245
CviJI	RGCY	2 cut(s)	74, 149
CviKI_1	RGCY	2 cut(s)	74, 149
DdeI	CTNAG	2 cut(s)	38, 70
DpnI	GATC	1 cut(s)	36
DpnII	GATC	1 cut(s)	34
FaeI	CATG	1 cut(s)	248
FaiI	YATR	4 cut(s)	28, 45, 226, 246
FatI	CATG	1 cut(s)	244
Fnu4HI	GCNGC	2 cut(s)	147, 162
Fsp4HI	GCNGC	2 cut(s)	147, 162
FspBI	CTAG	1 cut(s)	235
GluI	GCNGC	2 cut(s)	147, 162
Hin1II	CATG	1 cut(s)	248
HinfI	GANTC	2 cut(s)	47, 57
Hpy188I	TCNGA	1 cut(s)	71
Hpy188III	TCNNGA	1 cut(s)	51
HpyCH4V	TGCA	5 cut(s)	18, 114, 164, 185, 256
HpyF10VI	GCNNNNNNNGC	1 cut(s)	191
HpyF3I	CTNAG	2 cut(s)	38, 70
Hsp92II	CATG	1 cut(s)	248
Kzo9I	GATC	1 cut(s)	34
LmnI	GCTCC	1 cut(s)	143
LpnPI	CCDG	2 cut(s)	64, 154
Lsp1109I	GCAGC	2 cut(s)	148, 158
LweI	GCATC	1 cut(s)	172
MaeI	CTAG	1 cut(s)	235
MaeIII	GTNAC	1 cut(s)	62
MalI	GATC	1 cut(s)	36
MboI	GATC	1 cut(s)	34
MboII	GAAGA	2 cut(s)	132, 191
MflI	RGATCY	1 cut(s)	34
MnlI	CCTC	3 cut(s)	116, 200, 242
MseI	TTAA	1 cut(s)	127
MspA1I	CMGCKG	1 cut(s)	149
MwoI	GCNNNNNNNGC	1 cut(s)	191
NdeII	GATC	1 cut(s)	34
NlaIII	CATG	1 cut(s)	248
NmuCI	GTSAC	1 cut(s)	62
PfeI	GAWTC	2 cut(s)	47, 57
PkrI	GCNGC	2 cut(s)	148, 163
PshBI	ATTAAT	1 cut(s)	127
PstI	CTGCAG	1 cut(s)	20
PsuI	RGATCY	1 cut(s)	34
PvuII	CAGCTG	1 cut(s)	149
SaqAI	TTAA	1 cut(s)	127
SatI	GCNGC	2 cut(s)	147, 162
Sau3AI	GATC	1 cut(s)	34
SetI	ASST	5 cut(s)	76, 108, 151, 231, 253
SfaNI	GCATC	1 cut(s)	172
SfcI	CTRYAG	1 cut(s)	16
SgeI	CNNG	9 cut(s)	63, 90, 102, 148, 181, 198, 247, 252, 257
SspMI	CTAG	1 cut(s)	235
TfiI	GAWTC	2 cut(s)	47, 57
Tru1I	TTAA	1 cut(s)	127
Tru9I	TTAA	1 cut(s)	127
TseFI	GTSAC	1 cut(s)	62
TseI	GCWGC	2 cut(s)	146, 161
Tsp45I	GTSAC	1 cut(s)	62
TspDTI	ATGAA	2 cut(s)	43, 70
VspI	ATTAAT	1 cut(s)	127
XspI	CTAG	1 cut(s)	235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.