Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0017377

Physical Location & Seq

Genomic Coordinates Reverse (-)

12816338 .. 12818311

Gene Structure 1974 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG148900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGCAAGGACTGCGTAGATGTGTGGAGGAGATTGTGTTCTCTTATACCTACCCTAGACTTGACATGGAGGTTTCAAAACATATGAACCATTTATTAAAGGCACCATTCTGTGTACATCCAAAGACAGGTCGTGTTTGTGTTCCAATTGATCCCAACCATTGTGAGGATTTTGATCCTACTGCAGTTCCAACCCTTTCCACTCTTATAGAAGAACTTAATAATGAGGGTTTGAGAGCAGAGGCTGATAACGACCGGGATAGAACGTCACTTGGAAAATCAATAAGATTCTTCCAATCATCATTTTTGGAGCCTTTGGTAAAATCTTGCAAGGAGGAGATGATAAGTTCCTACAATGCGAAACTGCAGCAGTCGAAGTTGCAGCAGTCAAAGAACGTGCTTGCTGCAATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000428 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003824 GO:0003896 GO:0003899 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005658 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006269 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0030894 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0032993 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0043601 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0055029 GO:0061695 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:0097747 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03030 map00230 map00240 map01100 map03030

Pfam Domains

Protein Families

DNA_primase_S

Protein Analysis

136

Amino Acids

15.49

Weight (kDa)

6.42

Isoelectric Point (pI)

51.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_primase_S	PF01896	8 - 50	7.9e-13	DNA primase small subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0017377)

Species	Orthologous Gene IDs
malus_domestica	MD06G1072700.v1.1 MD14G1127600.v1.1
pyrus_communis	pycom16g19580
rosa_chinensis	RchiOBHm_Chr6g0245391
rosa_laevigata	RLG00000008502 RLG00000036015
rosa_multiflora	Rmu_sc0009380.1_g000010 Rmu_sc0030772.1_g000001
rosa_rugosa	Rorug05G0394000
rosa_samantha	Rh6BG026300 Rh6CG025000 Rh7DG148900
rosa_wichuraiana	Rw2G021700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	100
AclWI	GGATC	2 cut(s)	143, 167
AfaI	GTAC	1 cut(s)	114
AfiI	CCNNNNNNNGG	2 cut(s)	125, 163
AgsI	TTSAA	1 cut(s)	75
AloI	GAACNNNNNNTCC	2 cut(s)	20, 52
AlwI	GGATC	2 cut(s)	143, 167
AlwNI	CAGNNNCTG	1 cut(s)	242
ApeKI	GCWGC	3 cut(s)	364, 379, 401
AsuC2I	CCSGG	1 cut(s)	254
BanI	GGYRCC	1 cut(s)	100
BbvI	GCAGC	3 cut(s)	376, 388, 391
BcnI	CCSGG	1 cut(s)	254
BfaI	CTAG	2 cut(s)	54, 409
BfmI	CTRYAG	2 cut(s)	180, 362
BisI	GCNGC	3 cut(s)	365, 380, 402
BlsI	GCNGC	3 cut(s)	366, 381, 403
Bme1390I	CCNGG	1 cut(s)	254
BmiI	GGNNCC	2 cut(s)	102, 309
BmrFI	CCNGG	1 cut(s)	254
BpuMI	CCSGG	1 cut(s)	254
BsaBI	GATNNNNATC	1 cut(s)	171
BsaXI	ACNNNNNCTCC	2 cut(s)	20, 50
Bsc4I	CCNNNNNNNGG	2 cut(s)	125, 163
Bse8I	GATNNNNATC	1 cut(s)	171
BseGI	GGATG	1 cut(s)	115
BseJI	GATNNNNATC	1 cut(s)	171
BseLI	CCNNNNNNNGG	2 cut(s)	125, 163
BseRI	GAGGAG	2 cut(s)	41, 347
BseXI	GCAGC	3 cut(s)	376, 388, 391
Bsh1285I	CGRYCG	1 cut(s)	253
BshNI	GGYRCC	1 cut(s)	100
BsiEI	CGRYCG	1 cut(s)	253
BsiSI	CCGG	1 cut(s)	253
BslI	CCNNNNNNNGG	2 cut(s)	125, 163
Bsp1407I	TGTACA	1 cut(s)	112
Bsp143I	GATC	2 cut(s)	148, 172
BspLI	GGNNCC	2 cut(s)	102, 309
BspMAI	CTGCAG	2 cut(s)	184, 366
BspPI	GGATC	2 cut(s)	143, 167
BspT107I	GGYRCC	1 cut(s)	100
BsrGI	TGTACA	1 cut(s)	112
BssMI	GATC	2 cut(s)	148, 172
BstAPI	GCANNNNNTGC	1 cut(s)	10
BstAUI	TGTACA	1 cut(s)	112
BstC8I	GCNNGC	1 cut(s)	399
BstF5I	GGATG	1 cut(s)	115
BstKTI	GATC	2 cut(s)	151, 175
BstMBI	GATC	2 cut(s)	148, 172
BstMCI	CGRYCG	1 cut(s)	253
BstMWI	GCNNNNNNNGC	1 cut(s)	10
BstSCI	CCNGG	1 cut(s)	252
BstSFI	CTRYAG	2 cut(s)	180, 362
BstV1I	GCAGC	3 cut(s)	376, 388, 391
BtsCI	GGATG	1 cut(s)	115
Cac8I	GCNNGC	1 cut(s)	399
CaiI	CAGNNNCTG	1 cut(s)	242
Csp6I	GTAC	1 cut(s)	113
CviAII	CATG	1 cut(s)	64
CviJI	RGCY	2 cut(s)	242, 310
CviKI_1	RGCY	2 cut(s)	242, 310
CviQI	GTAC	1 cut(s)	113
DpnI	GATC	2 cut(s)	150, 174
DpnII	GATC	2 cut(s)	148, 172
FaeI	CATG	1 cut(s)	67
FaiI	YATR	5 cut(s)	45, 65, 81, 83, 206
FatI	CATG	1 cut(s)	63
FauNDI	CATATG	1 cut(s)	81
Fnu4HI	GCNGC	3 cut(s)	365, 380, 402
FokI	GGATG	1 cut(s)	102
Fsp4HI	GCNGC	3 cut(s)	365, 380, 402
FspBI	CTAG	2 cut(s)	54, 409
GluI	GCNGC	3 cut(s)	365, 380, 402
HapII	CCGG	1 cut(s)	253
Hin1II	CATG	1 cut(s)	67
HinfI	GANTC	1 cut(s)	285
HpaII	CCGG	1 cut(s)	253
Hpy166II	GTNNAC	1 cut(s)	113
Hpy8I	GTNNAC	1 cut(s)	113
HpyCH4IV	ACGT	2 cut(s)	263, 393
HpyCH4V	TGCA	6 cut(s)	4, 182, 327, 364, 379, 404
HpyF10VI	GCNNNNNNNGC	1 cut(s)	10
HpySE526I	ACGT	2 cut(s)	263, 393
Hsp92II	CATG	1 cut(s)	67
Kzo9I	GATC	2 cut(s)	148, 172
LmnI	GCTCC	1 cut(s)	307
LpnPI	CCDG	2 cut(s)	111, 266
Lsp1109I	GCAGC	3 cut(s)	376, 388, 391
MaeI	CTAG	2 cut(s)	54, 409
MaeII	ACGT	2 cut(s)	263, 393
MaeIII	GTNAC	1 cut(s)	264
MalI	GATC	2 cut(s)	150, 174
MboI	GATC	2 cut(s)	148, 172
MboII	GAAGA	2 cut(s)	221, 280
MfeI	CAATTG	1 cut(s)	144
MluCI	AATT	1 cut(s)	144
MmeI	TCCRAC	1 cut(s)	212
MnlI	CCTC	6 cut(s)	19, 61, 157, 217, 232, 325
MseI	TTAA	2 cut(s)	95, 216
MspI	CCGG	1 cut(s)	253
MspR9I	CCNGG	1 cut(s)	254
MunI	CAATTG	1 cut(s)	144
MwoI	GCNNNNNNNGC	1 cut(s)	10
NciI	CCSGG	1 cut(s)	254
NdeI	CATATG	1 cut(s)	81
NdeII	GATC	2 cut(s)	148, 172
NlaIII	CATG	1 cut(s)	67
NlaIV	GGNNCC	2 cut(s)	102, 309
NmuCI	GTSAC	1 cut(s)	264
PfeI	GAWTC	1 cut(s)	285
PkrI	GCNGC	3 cut(s)	366, 381, 403
PspN4I	GGNNCC	2 cut(s)	102, 309
PstI	CTGCAG	2 cut(s)	184, 366
PstNI	CAGNNNCTG	1 cut(s)	242
RsaI	GTAC	1 cut(s)	114
RsaNI	GTAC	1 cut(s)	113
SaqAI	TTAA	2 cut(s)	95, 216
SatI	GCNGC	3 cut(s)	365, 380, 402
Sau3AI	GATC	2 cut(s)	148, 172
ScrFI	CCNGG	1 cut(s)	254
SetI	ASST	5 cut(s)	50, 72, 130, 266, 396
SfcI	CTRYAG	2 cut(s)	180, 362
Sse9I	AATT	1 cut(s)	144
SspMI	CTAG	2 cut(s)	54, 409
StyD4I	CCNGG	1 cut(s)	252
TaiI	ACGT	2 cut(s)	266, 396
TaqI	TCGA	1 cut(s)	371
TasI	AATT	1 cut(s)	144
TatI	WGTACW	1 cut(s)	112
TfiI	GAWTC	1 cut(s)	285
Tru1I	TTAA	2 cut(s)	95, 216
Tru9I	TTAA	2 cut(s)	95, 216
TseFI	GTSAC	1 cut(s)	264
TseI	GCWGC	3 cut(s)	364, 379, 401
Tsp45I	GTSAC	1 cut(s)	264
TspDTI	ATGAA	1 cut(s)	98
XspI	CTAG	2 cut(s)	54, 409

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.