Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0017377

Physical Location & Seq

Genomic Coordinates Forward (+)

74887646 .. 74888851

Gene Structure 1206 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036015

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGTCTCTGGTTTCAGTTCTAACCTTTCTTATGTTTCAGCCTGCAAAGAGGCATTCCTATGCTCAAAATGGTTTCTACGCTGAGGAGAGGGAACTGATTTTTGATATAATGACATTGGTTTCAATCACATTCTCTCGGAATATAGTGGCCGACGTGGTGTTCATTGTTGGGCTCACAAATGAACTGAGAGCAGCTATTGCTGACTATTTTCGTGTCTACAAGGGCAACGAAAACAGTCATAAAAAGGTTTCTTTGATGGGCCCTGCTCTTCATCCATTCCTTGTGAGATTATATACTGAAGTTCTTAAGGATTTCCTTGAGAGGACATTGCTTTCCGGTCAAAAGATATTTTCTACTGCAGGGAGACGTGAAAAGATCTTAGATATGATTCCTGATGAATCTGTCACTGCTGAGCTCCGGGGAAAGTGGCAAGATAATAGACGAACCTCCAATGCAAAAGAAGACATTAATATTGCTCGTTGGGAGCAGCTGAAACATTTGCTGCAATCTGGAAAACAGAAGGTACAATATAGCAGATGCTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000428 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003824 GO:0003896 GO:0003899 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005658 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006269 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0030894 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0032993 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0043601 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0055029 GO:0061695 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:0097747 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03030 map00230 map00240 map01100 map03030

Pfam Domains

Protein Families

DNA_primase_S

Protein Analysis

182

Amino Acids

20.93

Weight (kDa)

9.48

Isoelectric Point (pI)

49.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017377)

Species	Orthologous Gene IDs
malus_domestica	MD06G1072700.v1.1 MD14G1127600.v1.1
pyrus_communis	pycom16g19580
rosa_chinensis	RchiOBHm_Chr6g0245391
rosa_laevigata	RLG00000008502 RLG00000036015
rosa_multiflora	Rmu_sc0009380.1_g000010 Rmu_sc0030772.1_g000001
rosa_rugosa	Rorug05G0394000
rosa_samantha	Rh6BG026300 Rh6CG025000 Rh7DG148900
rosa_wichuraiana	Rw2G021700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	216
AcoI	YGGCCR	1 cut(s)	147
AcuI	CTGAAG	1 cut(s)	318
AfaI	GTAC	1 cut(s)	525
AflII	CTTAAG	1 cut(s)	305
AgsI	TTSAA	1 cut(s)	123
AjiI	CACGTC	2 cut(s)	154, 368
AluBI	AGCT	3 cut(s)	194, 415, 490
AluI	AGCT	3 cut(s)	194, 415, 490
Alw21I	GWGCWC	1 cut(s)	417
Alw26I	GTCTC	2 cut(s)	9, 358
AoxI	GGCC	2 cut(s)	147, 259
ApaI	GGGCCC	1 cut(s)	263
ApeKI	GCWGC	3 cut(s)	191, 487, 502
AseI	ATTAAT	1 cut(s)	468
AspS9I	GGNCC	2 cut(s)	259, 260
AsuC2I	CCSGG	1 cut(s)	419
BaeGI	GKGCMC	1 cut(s)	263
BanII	GRGCYC	3 cut(s)	174, 263, 417
BbsI	GAAGAC	1 cut(s)	468
Bbv12I	GWGCWC	1 cut(s)	417
BbvCI	CCTCAGC	1 cut(s)	81
BbvI	GCAGC	3 cut(s)	203, 489, 499
BccI	CCATC	1 cut(s)	250
BcnI	CCSGG	1 cut(s)	419
BcoDI	GTCTC	2 cut(s)	9, 358
BfmI	CTRYAG	1 cut(s)	357
BfrI	CTTAAG	1 cut(s)	305
BglII	AGATCT	1 cut(s)	375
BisI	GCNGC	3 cut(s)	192, 488, 503
BlpI	GCTNAGC	1 cut(s)	411
BlsI	GCNGC	3 cut(s)	193, 489, 504
Bme1390I	CCNGG	1 cut(s)	419
BmgBI	CACGTC	2 cut(s)	154, 368
BmgT120I	GGNCC	2 cut(s)	259, 260
BmiI	GGNNCC	1 cut(s)	261
BmrFI	CCNGG	1 cut(s)	419
BmsI	GCATC	1 cut(s)	527
BpiI	GAAGAC	1 cut(s)	468
Bpu10I	CCTNAGC	1 cut(s)	81
Bpu1102I	GCTNAGC	1 cut(s)	411
BpuEI	CTTGAG	1 cut(s)	338
BpuMI	CCSGG	1 cut(s)	419
BsaJI	CCNNGG	1 cut(s)	418
BsaWI	WCCGGW	1 cut(s)	335
Bse3DI	GCAATG	1 cut(s)	326
BseDI	CCNNGG	1 cut(s)	418
BseGI	GGATG	1 cut(s)	271
BseMI	GCAATG	1 cut(s)	326
BseMII	CTCAG	3 cut(s)	72, 176, 402
BseRI	GAGGAG	1 cut(s)	98
BseSI	GKGCMC	1 cut(s)	263
BseXI	GCAGC	3 cut(s)	203, 489, 499
BshFI	GGCC	2 cut(s)	149, 261
BsiHKAI	GWGCWC	1 cut(s)	417
BsiSI	CCGG	2 cut(s)	336, 418
BsmAI	GTCTC	2 cut(s)	9, 358
BsmBI	CGTCTC	1 cut(s)	358
BsmI	GAATGC	1 cut(s)	52
BsnI	GGCC	2 cut(s)	149, 261
Bsp120I	GGGCCC	1 cut(s)	259
Bsp1286I	GDGCHC	3 cut(s)	174, 263, 417
Bsp143I	GATC	1 cut(s)	375
Bsp1720I	GCTNAGC	1 cut(s)	411
BspANI	GGCC	2 cut(s)	149, 261
BspCNI	CTCAG	3 cut(s)	73, 177, 403
BspLI	GGNNCC	1 cut(s)	261
BspMAI	CTGCAG	1 cut(s)	361
BspQI	GCTCTTC	1 cut(s)	273
BspTI	CTTAAG	1 cut(s)	305
BsrDI	GCAATG	1 cut(s)	326
BssECI	CCNNGG	1 cut(s)	418
BssMI	GATC	1 cut(s)	375
Bst4CI	ACNGT	1 cut(s)	236
Bst6I	CTCTTC	1 cut(s)	273
BstAFI	CTTAAG	1 cut(s)	305
BstAPI	GCANNNNNTGC	1 cut(s)	197
BstC8I	GCNNGC	1 cut(s)	42
BstDEI	CTNAG	4 cut(s)	81, 185, 379, 411
BstF5I	GGATG	1 cut(s)	271
BstKTI	GATC	1 cut(s)	378
BstMAI	GTCTC	2 cut(s)	9, 358
BstMBI	GATC	1 cut(s)	375
BstMWI	GCNNNNNNNGC	1 cut(s)	197
BstSCI	CCNGG	1 cut(s)	417
BstSFI	CTRYAG	1 cut(s)	357
BstSLI	GKGCMC	1 cut(s)	263
BstV1I	GCAGC	3 cut(s)	203, 489, 499
BstV2I	GAAGAC	1 cut(s)	468
BstX2I	RGATCY	1 cut(s)	375
BstYI	RGATCY	1 cut(s)	375
BsuRI	GGCC	2 cut(s)	149, 261
BtrI	CACGTC	2 cut(s)	154, 368
BtsCI	GGATG	1 cut(s)	271
BtsI	GCAGTG	1 cut(s)	405
BtsIMutI	CAGTG	1 cut(s)	405
Cac8I	GCNNGC	1 cut(s)	42
Cfr13I	GGNCC	2 cut(s)	259, 260
Csp6I	GTAC	1 cut(s)	524
CviJI	RGCY	7 cut(s)	40, 149, 172, 194, 261, 415, 490
CviKI_1	RGCY	7 cut(s)	40, 149, 172, 194, 261, 415, 490
CviQI	GTAC	1 cut(s)	524
DdeI	CTNAG	4 cut(s)	81, 185, 379, 411
DpnI	GATC	1 cut(s)	377
DpnII	GATC	1 cut(s)	375
EaeI	YGGCCR	1 cut(s)	147
Eam1104I	CTCTTC	1 cut(s)	273
EarI	CTCTTC	1 cut(s)	273
Ecl136II	GAGCTC	1 cut(s)	415
Eco24I	GRGCYC	3 cut(s)	174, 263, 417
Eco53kI	GAGCTC	1 cut(s)	415
Eco57I	CTGAAG	1 cut(s)	318
EcoICRI	GAGCTC	1 cut(s)	415
EcoO109I	RGGNCCY	1 cut(s)	260
EcoT38I	GRGCYC	3 cut(s)	174, 263, 417
Esp3I	CGTCTC	1 cut(s)	358
FaiI	YATR	9 cut(s)	32, 60, 107, 143, 240, 292, 294, 386, 531
FblI	GTMKAC	1 cut(s)	216
Fnu4HI	GCNGC	3 cut(s)	192, 488, 503
FokI	GGATG	1 cut(s)	258
FriOI	GRGCYC	3 cut(s)	174, 263, 417
Fsp4HI	GCNGC	3 cut(s)	192, 488, 503
GluI	GCNGC	3 cut(s)	192, 488, 503
HaeIII	GGCC	2 cut(s)	149, 261
HapII	CCGG	2 cut(s)	336, 418
HinfI	GANTC	2 cut(s)	388, 398
HpaII	CCGG	2 cut(s)	336, 418
Hpy166II	GTNNAC	1 cut(s)	217
Hpy188I	TCNGA	1 cut(s)	138
Hpy188III	TCNNGA	2 cut(s)	392, 510
Hpy8I	GTNNAC	1 cut(s)	217
Hpy99I	CGWCG	1 cut(s)	155
HpyAV	CCTTC	1 cut(s)	514
HpyCH4III	ACNGT	1 cut(s)	236
HpyCH4IV	ACGT	2 cut(s)	153, 367
HpyCH4V	TGCA	4 cut(s)	44, 359, 455, 505
HpyF10VI	GCNNNNNNNGC	1 cut(s)	197
HpyF3I	CTNAG	4 cut(s)	81, 185, 379, 411
HpySE526I	ACGT	2 cut(s)	153, 367
Kzo9I	GATC	1 cut(s)	375
LguI	GCTCTTC	1 cut(s)	273
LmnI	GCTCC	2 cut(s)	420, 484
LpnPI	CCDG	7 cut(s)	54, 276, 345, 349, 405, 431, 495
Lsp1109I	GCAGC	3 cut(s)	203, 489, 499
LweI	GCATC	1 cut(s)	527
MaeII	ACGT	2 cut(s)	153, 367
MaeIII	GTNAC	1 cut(s)	403
MalI	GATC	1 cut(s)	377
MboI	GATC	1 cut(s)	375
MboII	GAAGA	2 cut(s)	260, 473
MflI	RGATCY	1 cut(s)	375
MhlI	GDGCHC	3 cut(s)	174, 263, 417
MnlI	CCTC	5 cut(s)	42, 76, 81, 315, 457
MseI	TTAA	2 cut(s)	306, 468
MslI	CAYNNNNRTG	1 cut(s)	57
MspA1I	CMGCKG	1 cut(s)	490
MspCI	CTTAAG	1 cut(s)	305
MspI	CCGG	2 cut(s)	336, 418
MspR9I	CCNGG	1 cut(s)	419
Mva1269I	GAATGC	1 cut(s)	52
MwoI	GCNNNNNNNGC	1 cut(s)	197
NciI	CCSGG	1 cut(s)	419
NdeII	GATC	1 cut(s)	375
NlaIV	GGNNCC	1 cut(s)	261
NmuCI	GTSAC	1 cut(s)	403
PciSI	GCTCTTC	1 cut(s)	273
PctI	GAATGC	1 cut(s)	52
PfeI	GAWTC	2 cut(s)	388, 398
PkrI	GCNGC	3 cut(s)	193, 489, 504
PshBI	ATTAAT	1 cut(s)	468
Psp124BI	GAGCTC	1 cut(s)	417
PspN4I	GGNNCC	1 cut(s)	261
PspOMI	GGGCCC	1 cut(s)	259
PspPI	GGNCC	2 cut(s)	259, 260
PstI	CTGCAG	1 cut(s)	361
PsuI	RGATCY	1 cut(s)	375
PvuII	CAGCTG	1 cut(s)	490
RsaI	GTAC	1 cut(s)	525
RsaNI	GTAC	1 cut(s)	524
RseI	CAYNNNNRTG	1 cut(s)	57
SacI	GAGCTC	1 cut(s)	417
SapI	GCTCTTC	1 cut(s)	273
SaqAI	TTAA	2 cut(s)	306, 468
SatI	GCNGC	3 cut(s)	192, 488, 503
Sau3AI	GATC	1 cut(s)	375
Sau96I	GGNCC	2 cut(s)	259, 260
ScrFI	CCNGG	1 cut(s)	419
SduI	GDGCHC	3 cut(s)	174, 263, 417
SetI	ASST	9 cut(s)	26, 156, 196, 249, 370, 417, 449, 492, 525
SfaNI	GCATC	1 cut(s)	527
SfcI	CTRYAG	1 cut(s)	357
SmiMI	CAYNNNNRTG	1 cut(s)	57
SmlI	CTYRAG	2 cut(s)	305, 317
SmoI	CTYRAG	2 cut(s)	305, 317
SspI	AATATT	1 cut(s)	472
SstI	GAGCTC	1 cut(s)	417
StyD4I	CCNGG	1 cut(s)	417
TaaI	ACNGT	1 cut(s)	236
TaiI	ACGT	2 cut(s)	156, 370
TfiI	GAWTC	2 cut(s)	388, 398
Tru1I	TTAA	2 cut(s)	306, 468
Tru9I	TTAA	2 cut(s)	306, 468
TscAI	CASTG	1 cut(s)	412
TseFI	GTSAC	1 cut(s)	403
TseI	GCWGC	3 cut(s)	191, 487, 502
Tsp45I	GTSAC	1 cut(s)	403
TspDTI	ATGAA	4 cut(s)	151, 195, 260, 411
TspRI	CASTG	1 cut(s)	412
Vha464I	CTTAAG	1 cut(s)	305
VspI	ATTAAT	1 cut(s)	468
XmiI	GTMKAC	1 cut(s)	216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.