Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0014733

Physical Location & Seq

Genomic Coordinates Reverse (-)

18123733 .. 18125109

Gene Structure 1377 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1072800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGGAGCCAATGAATTCAAAGAAGAACAAAATGCTTTCTTCGGAAAGTAAGCGCTCTGTTGACGATGGCAGTGGAGGTCCCGATAGCGTAGACTTGGAAATCAAGCCAGGGGGAATGCTGGTGCAAAAGAGAACCGATGAGATGAATCCTAGTTCTATTTCAATCCATACAATCAAATTTAGAGTCAAGTATGGCTCTTCGTACCACGAAATTCAAATCAGCTTCCAAGCAAGCTTTAGGGAATTGAAGAAAATGTTGGCAGAGCGAATGAAGTTGCACCATCTGGATCAGAAGCTGATATACAAAAAGAAAGAGAGGGACTCCAAAAAGTATCTTGATGTGGCAAGAGTTAAACAAGGATCAAAGATCTTGCTGGTGGAGAACATTTTAGGTAGAGAAAAAAGGTGTCTAGAGTTGCTCAAAAATTCAAGTGTAGAGAAATCTTCGAAATCCTTAGCTGAAATCAACTTGGAAGTCACAGCTTTGGAAACAACAGATTCTACAGGTGGGAAAGTTTCCACGATGGATGTGGAGAATTTGACTGAGCTTCTGATGATGAAGTTAATTAAATTGGATGGAATTGTTGGCACCGGCCATCTAAAATTGCAGAGAAGAGTGACAAGAGTTCAGAAGTACATAAAAATTCTGGACATGTTGAAGCATCAGAACTCCAAATCAAGTAGAAATGGAGCAAAAATCAAATTGCAGCAACAAGAAATAAAGAAAATCCAACTGGCCACTAAAGGACTCAAAACCGATGCAGAAACAACGCGTGCATTGGAAGCCAGAAAATTCGATACGCAAAAATCCAGTGATGCAGCAGCAACAACAATAGAATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0006508 GO:0006511 GO:0006515 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010498 GO:0019538 GO:0019941 GO:0030163 GO:0033554 GO:0035966 GO:0035967 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051603 GO:0051716 GO:0051788 GO:0070887 GO:0071218 GO:0071310 GO:0071629 GO:0071704 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BAG ubiquitin

Protein Analysis

281

Amino Acids

31.67

Weight (kDa)

9.76

Isoelectric Point (pI)

34.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BAG	PF02179	153 - 218	1.8e-08	BAG domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0014733)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g01500 FvH4_5g01500
malus_domestica	MD06G1072800.v1.1
prunus_persica	Prupe.5G091300_v2.0.a1
pyrus_communis	pycom04g06050 pycom06g07230
rosa_chinensis	RchiOBHm_Chr7g0199191
rosa_laevigata	RLG00000003807
rosa_multiflora	Rmu_sc0006266.1_g000068
rosa_roxburghii	Rroxscaffold_3G00256970
rosa_rugosa	Rorug07G0053200 Rorug07G0053300
rosa_samantha	Rh7AG177000 Rh7BG180500 Rh7CG186200 Rh7DG180000
rosa_wichuraiana	Rw7G015570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	587
AccI	GTMKAC	1 cut(s)	90
AccII	CGCG	1 cut(s)	772
AclWI	GGATC	2 cut(s)	294, 367
AcoI	YGGCCR	2 cut(s)	592, 735
AcsI	RAATTY	8 cut(s)	13, 176, 210, 424, 535, 642, 791, 836
AfaI	GTAC	2 cut(s)	203, 635
AfeI	AGCGCT	1 cut(s)	53
AflIII	ACRYGT	2 cut(s)	651, 770
AgsI	TTSAA	6 cut(s)	18, 162, 215, 247, 429, 658
AjnI	CCWGG	1 cut(s)	106
AjuI	GAANNNNNNNTTGG	2 cut(s)	239, 271
AluBI	AGCT	6 cut(s)	222, 234, 295, 458, 482, 547
AluI	AGCT	6 cut(s)	222, 234, 295, 458, 482, 547
AlwI	GGATC	2 cut(s)	294, 367
AlwNI	CAGNNNCTG	1 cut(s)	295
Aor51HI	AGCGCT	1 cut(s)	53
AoxI	GGCC	2 cut(s)	592, 735
ApeKI	GCWGC	3 cut(s)	706, 818, 821
ApoI	RAATTY	8 cut(s)	13, 176, 210, 424, 535, 642, 791, 836
ArsI	GACNNNNNNTTYG	2 cut(s)	168, 200
AspLEI	GCGC	1 cut(s)	54
AspS9I	GGNCC	1 cut(s)	77
AsuII	TTCGAA	1 cut(s)	446
AvaII	GGWCC	1 cut(s)	77
BalI	TGGCCA	1 cut(s)	737
BanI	GGYRCC	1 cut(s)	587
BarI	GAAGNNNNNNTAC	2 cut(s)	284, 316
BbvI	GCAGC	3 cut(s)	718, 830, 833
BccI	CCATC	5 cut(s)	59, 288, 517, 569, 603
BciT130I	CCWGG	1 cut(s)	108
BfaI	CTAG	2 cut(s)	150, 410
BfmI	CTRYAG	1 cut(s)	501
BfoI	RGCGCY	1 cut(s)	55
BglII	AGATCT	1 cut(s)	366
BisI	GCNGC	3 cut(s)	707, 819, 822
BlsI	GCNGC	3 cut(s)	708, 820, 823
Bme1390I	CCNGG	1 cut(s)	108
Bme18I	GGWCC	1 cut(s)	77
BmgT120I	GGNCC	1 cut(s)	77
BmiI	GGNNCC	3 cut(s)	6, 79, 589
BmrFI	CCNGG	1 cut(s)	108
BmsI	GCATC	3 cut(s)	670, 748, 805
BplI	GAGNNNNNCTC	2 cut(s)	305, 337
Bpu10I	CCTNAGC	1 cut(s)	454
Bpu14I	TTCGAA	1 cut(s)	446
BsaJI	CCNNGG	1 cut(s)	107
Bse118I	RCCGGY	1 cut(s)	590
Bse1I	ACTGG	2 cut(s)	738, 810
BseBI	CCWGG	1 cut(s)	108
BseDI	CCNNGG	1 cut(s)	107
BseGI	GGATG	2 cut(s)	532, 580
BseMII	CTCAG	1 cut(s)	534
BseNI	ACTGG	2 cut(s)	738, 810
BseXI	GCAGC	3 cut(s)	718, 830, 833
Bsh1236I	CGCG	1 cut(s)	772
BshFI	GGCC	2 cut(s)	594, 737
BshNI	GGYRCC	1 cut(s)	587
BsiSI	CCGG	1 cut(s)	591
BslFI	GGGAC	2 cut(s)	63, 332
BsmFI	GGGAC	2 cut(s)	63, 332
BsmI	GAATGC	1 cut(s)	120
BsnI	GGCC	2 cut(s)	594, 737
Bsp119I	TTCGAA	1 cut(s)	446
Bsp143I	GATC	3 cut(s)	286, 359, 366
BspANI	GGCC	2 cut(s)	594, 737
BspCNI	CTCAG	1 cut(s)	535
BspFNI	CGCG	1 cut(s)	772
BspLI	GGNNCC	3 cut(s)	6, 79, 589
BspPI	GGATC	2 cut(s)	294, 367
BspQI	GCTCTTC	1 cut(s)	202
BspT104I	TTCGAA	1 cut(s)	446
BspT107I	GGYRCC	1 cut(s)	587
BsrFI	RCCGGY	1 cut(s)	590
BsrI	ACTGG	2 cut(s)	738, 810
BssAI	RCCGGY	1 cut(s)	590
BssECI	CCNNGG	1 cut(s)	107
BssMI	GATC	3 cut(s)	286, 359, 366
Bst2UI	CCWGG	1 cut(s)	108
Bst6I	CTCTTC	2 cut(s)	202, 607
BstBI	TTCGAA	1 cut(s)	446
BstC8I	GCNNGC	2 cut(s)	232, 774
BstDEI	CTNAG	2 cut(s)	454, 543
BstF5I	GGATG	2 cut(s)	532, 580
BstFNI	CGCG	1 cut(s)	772
BstH2I	RGCGCY	1 cut(s)	55
BstHHI	GCGC	1 cut(s)	54
BstKTI	GATC	3 cut(s)	289, 362, 369
BstMBI	GATC	3 cut(s)	286, 359, 366
BstMWI	GCNNNNNNNGC	1 cut(s)	782
BstNI	CCWGG	1 cut(s)	108
BstNSI	RCATGY	1 cut(s)	655
BstSCI	CCNGG	1 cut(s)	106
BstSFI	CTRYAG	1 cut(s)	501
BstUI	CGCG	1 cut(s)	772
BstV1I	GCAGC	3 cut(s)	718, 830, 833
BstX2I	RGATCY	1 cut(s)	366
BstYI	RGATCY	1 cut(s)	366
BsuRI	GGCC	2 cut(s)	594, 737
BtsCI	GGATG	2 cut(s)	532, 580
BtsI	GCAGTG	1 cut(s)	76
BtsIMutI	CAGTG	2 cut(s)	76, 817
Cac8I	GCNNGC	2 cut(s)	232, 774
CaiI	CAGNNNCTG	1 cut(s)	295
CfoI	GCGC	1 cut(s)	54
Cfr10I	RCCGGY	1 cut(s)	590
Cfr13I	GGNCC	1 cut(s)	77
Csp6I	GTAC	2 cut(s)	202, 634
CviAII	CATG	1 cut(s)	652
CviQI	GTAC	2 cut(s)	202, 634
DdeI	CTNAG	2 cut(s)	454, 543
DpnI	GATC	3 cut(s)	288, 361, 368
DpnII	GATC	3 cut(s)	286, 359, 366
EaeI	YGGCCR	2 cut(s)	592, 735
Eam1104I	CTCTTC	2 cut(s)	202, 607
EarI	CTCTTC	2 cut(s)	202, 607
Eco47I	GGWCC	1 cut(s)	77
Eco47III	AGCGCT	1 cut(s)	53
EcoO109I	RGGNCCY	1 cut(s)	77
EcoRI	GAATTC	2 cut(s)	13, 836
EcoRII	CCWGG	1 cut(s)	106
FaeI	CATG	1 cut(s)	655
FaiI	YATR	5 cut(s)	168, 192, 301, 638, 653
FaqI	GGGAC	2 cut(s)	63, 332
FatI	CATG	1 cut(s)	651
FblI	GTMKAC	1 cut(s)	90
Fnu4HI	GCNGC	3 cut(s)	707, 819, 822
FokI	GGATG	2 cut(s)	539, 587
Fsp4HI	GCNGC	3 cut(s)	707, 819, 822
FspBI	CTAG	2 cut(s)	150, 410
GlaI	GCGC	1 cut(s)	53
GluI	GCNGC	3 cut(s)	707, 819, 822
HaeII	RGCGCY	1 cut(s)	55
HaeIII	GGCC	2 cut(s)	594, 737
HapII	CCGG	1 cut(s)	591
HhaI	GCGC	1 cut(s)	54
Hin1II	CATG	1 cut(s)	655
Hin6I	GCGC	1 cut(s)	52
HinP1I	GCGC	1 cut(s)	52
HincII	GTYRAC	1 cut(s)	61
HindII	GTYRAC	1 cut(s)	61
HindIII	AAGCTT	1 cut(s)	232
HinfI	GANTC	5 cut(s)	145, 183, 320, 497, 747
HpaII	CCGG	1 cut(s)	591
Hpy166II	GTNNAC	2 cut(s)	61, 91
Hpy188I	TCNGA	6 cut(s)	43, 291, 552, 630, 666, 842
Hpy188III	TCNNGA	5 cut(s)	80, 284, 335, 410, 647
Hpy8I	GTNNAC	2 cut(s)	61, 91
HpyCH4V	TGCA	7 cut(s)	124, 277, 607, 706, 761, 776, 818
HpyF10VI	GCNNNNNNNGC	1 cut(s)	782
HpyF3I	CTNAG	2 cut(s)	454, 543
Hsp92II	CATG	1 cut(s)	655
HspAI	GCGC	1 cut(s)	52
Kzo9I	GATC	3 cut(s)	286, 359, 366
LguI	GCTCTTC	1 cut(s)	202
LmnI	GCTCC	2 cut(s)	4, 689
Lsp1109I	GCAGC	3 cut(s)	718, 830, 833
LweI	GCATC	3 cut(s)	670, 748, 805
MaeI	CTAG	2 cut(s)	150, 410
MaeIII	GTNAC	2 cut(s)	475, 616
MalI	GATC	3 cut(s)	288, 361, 368
MboI	GATC	3 cut(s)	286, 359, 366
MboII	GAAGA	6 cut(s)	30, 34, 189, 259, 435, 624
MflI	RGATCY	1 cut(s)	366
MlsI	TGGCCA	1 cut(s)	737
MluI	ACGCGT	1 cut(s)	770
MluNI	TGGCCA	1 cut(s)	737
MlyI	GAGTC	3 cut(s)	192, 314, 741
MmeI	TCCRAC	1 cut(s)	754
MnlI	CCTC	2 cut(s)	68, 309
Mox20I	TGGCCA	1 cut(s)	737
MscI	TGGCCA	1 cut(s)	737
MseI	TTAA	3 cut(s)	351, 563, 567
Msp20I	TGGCCA	1 cut(s)	737
MspI	CCGG	1 cut(s)	591
MspR9I	CCNGG	1 cut(s)	108
Mva1269I	GAATGC	1 cut(s)	120
MvaI	CCWGG	1 cut(s)	108
MvnI	CGCG	1 cut(s)	772
MwoI	GCNNNNNNNGC	1 cut(s)	782
NdeII	GATC	3 cut(s)	286, 359, 366
NlaIII	CATG	1 cut(s)	655
NlaIV	GGNNCC	3 cut(s)	6, 79, 589
NmuCI	GTSAC	2 cut(s)	475, 616
NspI	RCATGY	1 cut(s)	655
NspV	TTCGAA	1 cut(s)	446
PacI	TTAATTAA	1 cut(s)	567
PciI	ACATGT	1 cut(s)	651
PciSI	GCTCTTC	1 cut(s)	202
PctI	GAATGC	1 cut(s)	120
PfeI	GAWTC	2 cut(s)	145, 497
PkrI	GCNGC	3 cut(s)	708, 820, 823
PleI	GAGTC	3 cut(s)	191, 314, 741
PpsI	GAGTC	3 cut(s)	191, 314, 741
PpuMI	RGGWCCY	1 cut(s)	77
PscI	ACATGT	1 cut(s)	651
Psp5II	RGGWCCY	1 cut(s)	77
Psp6I	CCWGG	1 cut(s)	106
PspGI	CCWGG	1 cut(s)	106
PspN4I	GGNNCC	3 cut(s)	6, 79, 589
PspPI	GGNCC	1 cut(s)	77
PspPPI	RGGWCCY	1 cut(s)	77
PstNI	CAGNNNCTG	1 cut(s)	295
PsuI	RGATCY	1 cut(s)	366
RsaI	GTAC	2 cut(s)	203, 635
RsaNI	GTAC	2 cut(s)	202, 634
SapI	GCTCTTC	1 cut(s)	202
SaqAI	TTAA	3 cut(s)	351, 563, 567
SatI	GCNGC	3 cut(s)	707, 819, 822
Sau3AI	GATC	3 cut(s)	286, 359, 366
Sau96I	GGNCC	1 cut(s)	77
SchI	GAGTC	3 cut(s)	192, 314, 741
ScrFI	CCNGG	1 cut(s)	108
SfaNI	GCATC	3 cut(s)	670, 748, 805
SfcI	CTRYAG	1 cut(s)	501
SfuI	TTCGAA	1 cut(s)	446
SinI	GGWCC	1 cut(s)	77
SspMI	CTAG	2 cut(s)	150, 410
StyD4I	CCNGG	1 cut(s)	106
TaqI	TCGA	2 cut(s)	446, 795
TatI	WGTACW	1 cut(s)	633
TfiI	GAWTC	2 cut(s)	145, 497
Tru1I	TTAA	3 cut(s)	351, 563, 567
Tru9I	TTAA	3 cut(s)	351, 563, 567
TscAI	CASTG	2 cut(s)	76, 817
TseFI	GTSAC	2 cut(s)	475, 616
TseI	GCWGC	3 cut(s)	706, 818, 821
Tsp45I	GTSAC	2 cut(s)	475, 616
TspDTI	ATGAA	4 cut(s)	26, 158, 284, 572
TspRI	CASTG	2 cut(s)	76, 817
VpaK11BI	GGWCC	1 cut(s)	77
XapI	RAATTY	8 cut(s)	13, 176, 210, 424, 535, 642, 791, 836
XbaI	TCTAGA	1 cut(s)	409
XceI	RCATGY	1 cut(s)	655
XcmI	CCANNNNNNNNNTGG	1 cut(s)	526
XmiI	GTMKAC	1 cut(s)	90
XspI	CTAG	2 cut(s)	150, 410

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.