Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0014733

Physical Location & Seq

Genomic Coordinates Reverse (-)

11751800 .. 11752999

Gene Structure 1200 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g07230.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGTTTTCTTCGGAAAGTAATCGCTCTGTTGACGATGACAGCGGAGGTCCCGATAGCGCAGACTTGGAAATCAGGCCGGGGGGAATGCTGGTGCAAAAGCGAACCGATGAGACAAATCCTAGTGCTGTTTCAATCCCCACAATCAAAGTTAGAGTCAAGCATGGCTCTTCGTGCCACGAAATTCAAATCAACTCCCAAGCAAGCTTTGGGGAATTGAAGAAAATGTTGGCAGAGCGAACGAAGTTGCACCATCTGGATCAGAAGCTGATATACAAAAAGAAAGAGAGGGACTCCAAAGAGTATCTTGATGTGGCAAGAGTTAAACAAGGATCAAAGATCGTGCTGGTGGAGGACATTTTAGGCAGAGAAAAAAGGTGCCTAGAGTTGCTCAGAAATTCAAATGCAGAGAAATCTTCGAAATCCTTAGCCGAAATCAACTTGGAAGTGGACAAGCTTGCAGGCCAGGTCACAGCGTTGGAAACAACAGCTTCTACAGGTGGGAAAGTTTCCGAGACGGATGTGGAGAATTTGACTGAGCTTCTGATGATGAAGTTGATTACACTGGATGGAATTGTTGCCGCCGGCCATCTAAAATTGCAGAGAAGAGTGCAGGTGACAAGAGTTCAGAAGTACATACAAATTCTGGACATGTTGAAGCATCAGAGCTCCAAATCAAGCGGCAATGGGGCAAAAATCAAATTGCAGCAACAAGAAAATCCAACTGGCCACATGCCTAAGGACTCAAAACCGACGCAGAAACAGCGCGTGCATTGGAAGCTAGAAAATTCAGTACGAAAAAATCCAGTGATGCAGCAGCAACAGCAGGAGAATTCTGAGTCTCTTGCGGTTACAACAAAATGGGAAACTTTTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0006508 GO:0006511 GO:0006515 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010498 GO:0019538 GO:0019941 GO:0030163 GO:0033554 GO:0035966 GO:0035967 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051603 GO:0051716 GO:0051788 GO:0070887 GO:0071218 GO:0071310 GO:0071629 GO:0071704 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BAG ubiquitin

Protein Analysis

292

Amino Acids

32.65

Weight (kDa)

9.21

Isoelectric Point (pI)

38.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014733)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g01500 FvH4_5g01500
malus_domestica	MD06G1072800.v1.1
prunus_persica	Prupe.5G091300_v2.0.a1
pyrus_communis	pycom04g06050 pycom06g07230
rosa_chinensis	RchiOBHm_Chr7g0199191
rosa_laevigata	RLG00000003807
rosa_multiflora	Rmu_sc0006266.1_g000068
rosa_roxburghii	Rroxscaffold_3G00256970
rosa_rugosa	Rorug07G0053200 Rorug07G0053300
rosa_samantha	Rh7AG177000 Rh7BG180500 Rh7CG186200 Rh7DG180000
rosa_wichuraiana	Rw7G015570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	601
Acc36I	ACCTGC	1 cut(s)	601
AccB1I	GGYRCC	1 cut(s)	375
AccII	CGCG	1 cut(s)	765
AciI	CCGC	4 cut(s)	42, 579, 678, 845
AclWI	GGATC	2 cut(s)	264, 337
AcoI	YGGCCR	2 cut(s)	583, 724
AcsI	RAATTY	6 cut(s)	180, 394, 526, 639, 784, 829
AfaI	GTAC	2 cut(s)	632, 792
AflIII	ACRYGT	1 cut(s)	648
AgsI	TTSAA	5 cut(s)	132, 185, 217, 399, 655
AjnI	CCWGG	1 cut(s)	462
AjuI	GAANNNNNNNTTGG	2 cut(s)	209, 241
AluBI	AGCT	7 cut(s)	204, 265, 454, 488, 538, 666, 778
AluI	AGCT	7 cut(s)	204, 265, 454, 488, 538, 666, 778
Alw21I	GWGCWC	1 cut(s)	668
Alw26I	GTCTC	3 cut(s)	104, 506, 843
AlwI	GGATC	2 cut(s)	264, 337
AlwNI	CAGNNNCTG	1 cut(s)	265
AoxI	GGCC	4 cut(s)	74, 460, 583, 724
ApeKI	GCWGC	3 cut(s)	703, 811, 814
ApoI	RAATTY	6 cut(s)	180, 394, 526, 639, 784, 829
ArsI	GACNNNNNNTTYG	2 cut(s)	138, 170
AspLEI	GCGC	2 cut(s)	59, 765
AspS9I	GGNCC	1 cut(s)	47
AsuC2I	CCSGG	1 cut(s)	78
AsuHPI	GGTGA	1 cut(s)	625
AsuII	TTCGAA	1 cut(s)	416
AvaII	GGWCC	1 cut(s)	47
AxyI	CCTNAGG	1 cut(s)	735
BalI	TGGCCA	1 cut(s)	726
BanI	GGYRCC	1 cut(s)	375
BanII	GRGCYC	1 cut(s)	668
BarI	GAAGNNNNNNTAC	2 cut(s)	254, 286
Bbv12I	GWGCWC	1 cut(s)	668
BbvI	GCAGC	3 cut(s)	715, 823, 826
BccI	CCATC	3 cut(s)	258, 560, 594
BciT130I	CCWGG	1 cut(s)	464
BcnI	CCSGG	1 cut(s)	78
BcoDI	GTCTC	3 cut(s)	104, 506, 843
BfaI	CTAG	3 cut(s)	120, 380, 779
BfmI	CTRYAG	1 cut(s)	492
BfuAI	ACCTGC	1 cut(s)	601
BisI	GCNGC	5 cut(s)	579, 679, 704, 812, 815
BlsI	GCNGC	5 cut(s)	580, 680, 705, 813, 816
Bme1390I	CCNGG	2 cut(s)	78, 464
Bme18I	GGWCC	1 cut(s)	47
BmgT120I	GGNCC	1 cut(s)	47
BmiI	GGNNCC	2 cut(s)	49, 377
BmrFI	CCNGG	2 cut(s)	78, 464
BmsI	GCATC	2 cut(s)	667, 798
BplI	GAGNNNNNCTC	2 cut(s)	275, 307
Bpu10I	CCTNAGC	1 cut(s)	424
Bpu14I	TTCGAA	1 cut(s)	416
BpuMI	CCSGG	1 cut(s)	78
BsaJI	CCNNGG	1 cut(s)	77
Bse118I	RCCGGY	1 cut(s)	581
Bse1I	ACTGG	3 cut(s)	567, 727, 803
Bse21I	CCTNAGG	1 cut(s)	735
Bse3DI	GCAATG	1 cut(s)	688
BseBI	CCWGG	1 cut(s)	464
BseDI	CCNNGG	1 cut(s)	77
BseGI	GGATG	2 cut(s)	523, 571
BseMI	GCAATG	1 cut(s)	688
BseMII	CTCAG	3 cut(s)	403, 525, 825
BseNI	ACTGG	3 cut(s)	567, 727, 803
BseXI	GCAGC	3 cut(s)	715, 823, 826
BsgI	GTGCAG	1 cut(s)	629
Bsh1236I	CGCG	1 cut(s)	765
BshFI	GGCC	4 cut(s)	76, 462, 585, 726
BshNI	GGYRCC	1 cut(s)	375
BsiHKAI	GWGCWC	1 cut(s)	668
BsiSI	CCGG	2 cut(s)	77, 582
BslFI	GGGAC	2 cut(s)	33, 302
BsmAI	GTCTC	3 cut(s)	104, 506, 843
BsmBI	CGTCTC	1 cut(s)	506
BsmFI	GGGAC	2 cut(s)	33, 302
BsmI	GAATGC	1 cut(s)	90
BsnI	GGCC	4 cut(s)	76, 462, 585, 726
Bsp119I	TTCGAA	1 cut(s)	416
Bsp1286I	GDGCHC	1 cut(s)	668
Bsp143I	GATC	3 cut(s)	256, 329, 336
BspACI	CCGC	4 cut(s)	42, 579, 678, 845
BspANI	GGCC	4 cut(s)	76, 462, 585, 726
BspCNI	CTCAG	3 cut(s)	402, 526, 826
BspFNI	CGCG	1 cut(s)	765
BspLI	GGNNCC	2 cut(s)	49, 377
BspMI	ACCTGC	1 cut(s)	601
BspPI	GGATC	2 cut(s)	264, 337
BspQI	GCTCTTC	1 cut(s)	172
BspT104I	TTCGAA	1 cut(s)	416
BspT107I	GGYRCC	1 cut(s)	375
BsrDI	GCAATG	1 cut(s)	688
BsrFI	RCCGGY	1 cut(s)	581
BsrI	ACTGG	3 cut(s)	567, 727, 803
BssAI	RCCGGY	1 cut(s)	581
BssECI	CCNNGG	1 cut(s)	77
BssMI	GATC	3 cut(s)	256, 329, 336
Bst2UI	CCWGG	1 cut(s)	464
Bst6I	CTCTTC	2 cut(s)	172, 598
BstBI	TTCGAA	1 cut(s)	416
BstC8I	GCNNGC	5 cut(s)	202, 456, 460, 583, 767
BstDEI	CTNAG	5 cut(s)	389, 424, 534, 735, 834
BstF5I	GGATG	2 cut(s)	523, 571
BstFNI	CGCG	1 cut(s)	765
BstHHI	GCGC	2 cut(s)	59, 765
BstKTI	GATC	3 cut(s)	259, 332, 339
BstMAI	GTCTC	3 cut(s)	104, 506, 843
BstMBI	GATC	3 cut(s)	256, 329, 336
BstMWI	GCNNNNNNNGC	4 cut(s)	171, 760, 775, 820
BstNI	CCWGG	1 cut(s)	464
BstNSI	RCATGY	2 cut(s)	652, 733
BstSCI	CCNGG	2 cut(s)	76, 462
BstSFI	CTRYAG	1 cut(s)	492
BstUI	CGCG	1 cut(s)	765
BstV1I	GCAGC	3 cut(s)	715, 823, 826
Bsu36I	CCTNAGG	1 cut(s)	735
BsuRI	GGCC	4 cut(s)	76, 462, 585, 726
BtsCI	GGATG	2 cut(s)	523, 571
BtsIMutI	CAGTG	2 cut(s)	560, 810
BveI	ACCTGC	1 cut(s)	601
Cac8I	GCNNGC	5 cut(s)	202, 456, 460, 583, 767
CaiI	CAGNNNCTG	1 cut(s)	265
CfoI	GCGC	2 cut(s)	59, 765
Cfr10I	RCCGGY	1 cut(s)	581
Cfr13I	GGNCC	1 cut(s)	47
CseI	GACGC	1 cut(s)	760
Csp6I	GTAC	2 cut(s)	631, 791
CviAII	CATG	3 cut(s)	161, 649, 730
CviQI	GTAC	2 cut(s)	631, 791
DdeI	CTNAG	5 cut(s)	389, 424, 534, 735, 834
DpnI	GATC	3 cut(s)	258, 331, 338
DpnII	GATC	3 cut(s)	256, 329, 336
EaeI	YGGCCR	2 cut(s)	583, 724
Eam1104I	CTCTTC	2 cut(s)	172, 598
EarI	CTCTTC	2 cut(s)	172, 598
Ecl136II	GAGCTC	1 cut(s)	666
Eco24I	GRGCYC	1 cut(s)	668
Eco47I	GGWCC	1 cut(s)	47
Eco53kI	GAGCTC	1 cut(s)	666
Eco81I	CCTNAGG	1 cut(s)	735
EcoICRI	GAGCTC	1 cut(s)	666
EcoO109I	RGGNCCY	1 cut(s)	47
EcoRI	GAATTC	1 cut(s)	829
EcoRII	CCWGG	1 cut(s)	462
EcoT38I	GRGCYC	1 cut(s)	668
Esp3I	CGTCTC	1 cut(s)	506
FaeI	CATG	3 cut(s)	164, 652, 733
FaiI	YATR	5 cut(s)	162, 271, 635, 650, 731
FalI	AAGNNNNNCTT	2 cut(s)	288, 320
FaqI	GGGAC	2 cut(s)	33, 302
FatI	CATG	3 cut(s)	160, 648, 729
Fnu4HI	GCNGC	5 cut(s)	579, 679, 704, 812, 815
FokI	GGATG	2 cut(s)	530, 578
FriOI	GRGCYC	1 cut(s)	668
Fsp4HI	GCNGC	5 cut(s)	579, 679, 704, 812, 815
FspBI	CTAG	3 cut(s)	120, 380, 779
GlaI	GCGC	2 cut(s)	58, 764
GluI	GCNGC	5 cut(s)	579, 679, 704, 812, 815
HaeIII	GGCC	4 cut(s)	76, 462, 585, 726
HapII	CCGG	2 cut(s)	77, 582
HgaI	GACGC	1 cut(s)	760
HhaI	GCGC	2 cut(s)	59, 765
Hin1II	CATG	3 cut(s)	164, 652, 733
Hin6I	GCGC	2 cut(s)	57, 763
HinP1I	GCGC	2 cut(s)	57, 763
HincII	GTYRAC	1 cut(s)	31
HindII	GTYRAC	1 cut(s)	31
HindIII	AAGCTT	2 cut(s)	202, 452
HinfI	GANTC	4 cut(s)	153, 290, 740, 836
HpaII	CCGG	2 cut(s)	77, 582
HphI	GGTGA	1 cut(s)	625
Hpy166II	GTNNAC	2 cut(s)	31, 448
Hpy188I	TCNGA	8 cut(s)	13, 261, 392, 511, 543, 627, 663, 835
Hpy188III	TCNNGA	4 cut(s)	50, 254, 305, 644
Hpy8I	GTNNAC	2 cut(s)	31, 448
Hpy99I	CGWCG	1 cut(s)	754
HpyCH4V	TGCA	9 cut(s)	94, 247, 404, 458, 598, 610, 703, 769, 811
HpyF10VI	GCNNNNNNNGC	4 cut(s)	171, 760, 775, 820
HpyF3I	CTNAG	5 cut(s)	389, 424, 534, 735, 834
Hsp92II	CATG	3 cut(s)	164, 652, 733
HspAI	GCGC	2 cut(s)	57, 763
KroI	GCCGGC	1 cut(s)	581
KroNI	GCCGGC	1 cut(s)	583
Kzo9I	GATC	3 cut(s)	256, 329, 336
LguI	GCTCTTC	1 cut(s)	172
LmnI	GCTCC	1 cut(s)	671
Lsp1109I	GCAGC	3 cut(s)	715, 823, 826
LweI	GCATC	2 cut(s)	667, 798
MaeI	CTAG	3 cut(s)	120, 380, 779
MaeIII	GTNAC	3 cut(s)	466, 613, 847
MalI	GATC	3 cut(s)	258, 331, 338
MboI	GATC	3 cut(s)	256, 329, 336
MboII	GAAGA	4 cut(s)	159, 229, 405, 615
MhlI	GDGCHC	1 cut(s)	668
MlsI	TGGCCA	1 cut(s)	726
MluNI	TGGCCA	1 cut(s)	726
MlyI	GAGTC	4 cut(s)	162, 284, 734, 845
MmeI	TCCRAC	2 cut(s)	456, 743
MnlI	CCTC	3 cut(s)	38, 279, 343
Mox20I	TGGCCA	1 cut(s)	726
MroNI	GCCGGC	1 cut(s)	581
MscI	TGGCCA	1 cut(s)	726
MseI	TTAA	2 cut(s)	321, 874
Msp20I	TGGCCA	1 cut(s)	726
MspA1I	CMGCKG	1 cut(s)	42
MspI	CCGG	2 cut(s)	77, 582
MspR9I	CCNGG	2 cut(s)	78, 464
Mva1269I	GAATGC	1 cut(s)	90
MvaI	CCWGG	1 cut(s)	464
MvnI	CGCG	1 cut(s)	765
MwoI	GCNNNNNNNGC	4 cut(s)	171, 760, 775, 820
NaeI	GCCGGC	1 cut(s)	583
NciI	CCSGG	1 cut(s)	78
NdeII	GATC	3 cut(s)	256, 329, 336
NgoMIV	GCCGGC	1 cut(s)	581
NlaIII	CATG	3 cut(s)	164, 652, 733
NlaIV	GGNNCC	2 cut(s)	49, 377
NmuCI	GTSAC	2 cut(s)	466, 613
NspI	RCATGY	2 cut(s)	652, 733
NspV	TTCGAA	1 cut(s)	416
PaqCI	CACCTGC	1 cut(s)	601
PciI	ACATGT	1 cut(s)	648
PciSI	GCTCTTC	1 cut(s)	172
PctI	GAATGC	1 cut(s)	90
PdiI	GCCGGC	1 cut(s)	583
PkrI	GCNGC	5 cut(s)	580, 680, 705, 813, 816
PleI	GAGTC	4 cut(s)	161, 284, 734, 844
PpsI	GAGTC	4 cut(s)	161, 284, 734, 844
PpuMI	RGGWCCY	1 cut(s)	47
PscI	ACATGT	1 cut(s)	648
Psp124BI	GAGCTC	1 cut(s)	668
Psp5II	RGGWCCY	1 cut(s)	47
Psp6I	CCWGG	1 cut(s)	462
PspGI	CCWGG	1 cut(s)	462
PspN4I	GGNNCC	2 cut(s)	49, 377
PspPI	GGNCC	1 cut(s)	47
PspPPI	RGGWCCY	1 cut(s)	47
PstNI	CAGNNNCTG	1 cut(s)	265
RsaI	GTAC	2 cut(s)	632, 792
RsaNI	GTAC	2 cut(s)	631, 791
SacI	GAGCTC	1 cut(s)	668
SapI	GCTCTTC	1 cut(s)	172
SaqAI	TTAA	2 cut(s)	321, 874
SatI	GCNGC	5 cut(s)	579, 679, 704, 812, 815
Sau3AI	GATC	3 cut(s)	256, 329, 336
Sau96I	GGNCC	1 cut(s)	47
SchI	GAGTC	4 cut(s)	162, 284, 734, 845
ScrFI	CCNGG	2 cut(s)	78, 464
SduI	GDGCHC	1 cut(s)	668
SfaNI	GCATC	2 cut(s)	667, 798
SfcI	CTRYAG	1 cut(s)	492
SfuI	TTCGAA	1 cut(s)	416
SinI	GGWCC	1 cut(s)	47
SsiI	CCGC	4 cut(s)	42, 579, 678, 845
SspMI	CTAG	3 cut(s)	120, 380, 779
SstI	GAGCTC	1 cut(s)	668
StyD4I	CCNGG	2 cut(s)	76, 462
TaqI	TCGA	1 cut(s)	416
TatI	WGTACW	1 cut(s)	630
TauI	GCSGC	2 cut(s)	581, 681
Tru1I	TTAA	2 cut(s)	321, 874
Tru9I	TTAA	2 cut(s)	321, 874
TscAI	CASTG	2 cut(s)	567, 810
TseFI	GTSAC	2 cut(s)	466, 613
TseI	GCWGC	3 cut(s)	703, 811, 814
Tsp45I	GTSAC	2 cut(s)	466, 613
TspDTI	ATGAA	1 cut(s)	563
TspGWI	ACGGA	1 cut(s)	530
TspRI	CASTG	2 cut(s)	567, 810
VpaK11BI	GGWCC	1 cut(s)	47
XapI	RAATTY	6 cut(s)	180, 394, 526, 639, 784, 829
XceI	RCATGY	2 cut(s)	652, 733
XcmI	CCANNNNNNNNNTGG	1 cut(s)	203
XspI	CTAG	3 cut(s)	120, 380, 779

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.