Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0014733

Physical Location & Seq

Genomic Coordinates Forward (+)

5931183 .. 5932376

Gene Structure 1194 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g06050.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGGAGCCAATGAAGTCAAAGAAGAACAAAATGCTTTCTTCGGAAAGCAAGCGCTCTGATGACGATGGCAGGGGATGCCCCGATAGTGCAGGCTTGGAAATCAGGCCGGGGGGAATGCTGGTGCAAAAGCGAACCGTTGAGATGAATCCCAGTTCTGTTTCAATCCCCACAATCAAAATTAGAGTCCGTTATGGCTCTTCGTACCACGAAATTCTAATCAGCTCCCAAGCAAGCTTTGGGGAGTTGAAGAAAATGTTGGCAGAGCCAACGAAATTGCACCATCTGGATCAGAAGCTAATATACAAAAAGAAAGAGAGGGACTCCAAAGAGTATCTTGATGTGGCAAGAGTTAAACACGGATCAAGGATTGTGCTGGTGGAGGACATTTTGGGCAGAGAAAAAAGGTGCCTAGAGTTGCTCAGAAATTCAAATGCAGAGAAATCTTCGAAATCCATAGCCGAAATCAACTTGGAAGTGGACAAGCTTGCAGGCCAGGTCACATCTTTGGAAACAACAGCTTCCGCAGGTGGGAAAGTTTCCGAGACGGATGTGGAGAAATTGACTGAGCTTCTGATGATGAAGTTGATTAAACTGGATGGAACTGTTGCCGACGGAGATCTAAAATTGCAGAGAAGAGTGCAGGTGACAAGAGTTCAGAAGTACATAGAAATTCTGGACATGTTGAAGCATCAGAACTCCAAATCTAGCAGCAATGGGAATAAAATCAAATTGCAGCAACAAGACAGTTCAACCGGCCACATGCCGAAGGACTCAAAACCGACACAAAAACAAAGCATACATTGGAAACTAGAAAATTCGGTACGAAAAAATCCAGTGATGCAGCAGCAACAAGAGAAGAATTCTGAGTCAGTTGTAGTTACAACAAAATGGGAAACTTTTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0006508 GO:0006511 GO:0006515 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010498 GO:0019538 GO:0019941 GO:0030163 GO:0033554 GO:0035966 GO:0035967 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051603 GO:0051716 GO:0051788 GO:0070887 GO:0071218 GO:0071310 GO:0071629 GO:0071704 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BAG ubiquitin

Protein Analysis

302

Amino Acids

33.99

Weight (kDa)

9.46

Isoelectric Point (pI)

45.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014733)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g01500 FvH4_5g01500
malus_domestica	MD06G1072800.v1.1
prunus_persica	Prupe.5G091300_v2.0.a1
pyrus_communis	pycom04g06050 pycom06g07230
rosa_chinensis	RchiOBHm_Chr7g0199191
rosa_laevigata	RLG00000003807
rosa_multiflora	Rmu_sc0006266.1_g000068
rosa_roxburghii	Rroxscaffold_3G00256970
rosa_rugosa	Rorug07G0053200 Rorug07G0053300
rosa_samantha	Rh7AG177000 Rh7BG180500 Rh7CG186200 Rh7DG180000
rosa_wichuraiana	Rw7G015570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	515, 631
Acc36I	ACCTGC	2 cut(s)	515, 631
AccB1I	GGYRCC	1 cut(s)	405
AciI	CCGC	1 cut(s)	522
AclWI	GGATC	2 cut(s)	294, 367
AcoI	YGGCCR	1 cut(s)	754
AcsI	RAATTY	5 cut(s)	210, 424, 669, 814, 859
AfaI	GTAC	3 cut(s)	203, 662, 822
AfeI	AGCGCT	1 cut(s)	53
AfiI	CCNNNNNNNGG	1 cut(s)	528
AflIII	ACRYGT	1 cut(s)	678
AgsI	TTSAA	5 cut(s)	162, 247, 429, 685, 750
AjnI	CCWGG	1 cut(s)	492
AjuI	GAANNNNNNNTTGG	2 cut(s)	239, 271
AluBI	AGCT	6 cut(s)	222, 234, 295, 484, 518, 568
AluI	AGCT	6 cut(s)	222, 234, 295, 484, 518, 568
Alw26I	GTCTC	1 cut(s)	536
AlwI	GGATC	2 cut(s)	294, 367
Aor51HI	AGCGCT	1 cut(s)	53
AoxI	GGCC	3 cut(s)	104, 490, 754
ApeKI	GCWGC	4 cut(s)	708, 733, 841, 844
ApoI	RAATTY	5 cut(s)	210, 424, 669, 814, 859
ArsI	GACNNNNNNTTYG	2 cut(s)	168, 200
AspLEI	GCGC	1 cut(s)	54
AsuC2I	CCSGG	1 cut(s)	108
AsuHPI	GGTGA	1 cut(s)	655
AsuII	TTCGAA	1 cut(s)	446
BanI	GGYRCC	1 cut(s)	405
BarI	GAAGNNNNNNTAC	2 cut(s)	284, 316
BbvI	GCAGC	4 cut(s)	720, 745, 853, 856
BccI	CCATC	3 cut(s)	59, 288, 590
BciT130I	CCWGG	1 cut(s)	494
BcnI	CCSGG	1 cut(s)	108
BcoDI	GTCTC	1 cut(s)	536
BfaI	CTAG	3 cut(s)	410, 705, 809
BfoI	RGCGCY	1 cut(s)	55
BfuAI	ACCTGC	2 cut(s)	515, 631
BglII	AGATCT	1 cut(s)	616
BisI	GCNGC	4 cut(s)	709, 734, 842, 845
BlsI	GCNGC	4 cut(s)	710, 735, 843, 846
Bme1390I	CCNGG	2 cut(s)	108, 494
BmiI	GGNNCC	2 cut(s)	6, 407
BmrFI	CCNGG	2 cut(s)	108, 494
BmrI	ACTGGG	1 cut(s)	144
BmsI	GCATC	3 cut(s)	65, 697, 828
BmuI	ACTGGG	1 cut(s)	144
BplI	GAGNNNNNCTC	2 cut(s)	305, 337
Bpu14I	TTCGAA	1 cut(s)	446
BpuMI	CCSGG	1 cut(s)	108
BsaJI	CCNNGG	1 cut(s)	107
Bsc4I	CCNNNNNNNGG	1 cut(s)	528
Bse118I	RCCGGY	1 cut(s)	752
Bse1I	ACTGG	3 cut(s)	150, 597, 833
Bse3DI	GCAATG	1 cut(s)	718
BseBI	CCWGG	1 cut(s)	494
BseDI	CCNNGG	1 cut(s)	107
BseGI	GGATG	3 cut(s)	80, 553, 601
BseLI	CCNNNNNNNGG	1 cut(s)	528
BseMI	GCAATG	1 cut(s)	718
BseMII	CTCAG	3 cut(s)	433, 555, 855
BseNI	ACTGG	3 cut(s)	150, 597, 833
BseXI	GCAGC	4 cut(s)	720, 745, 853, 856
BsgI	GTGCAG	2 cut(s)	108, 659
BshFI	GGCC	3 cut(s)	106, 492, 756
BshNI	GGYRCC	1 cut(s)	405
BsiSI	CCGG	2 cut(s)	107, 753
BslFI	GGGAC	1 cut(s)	332
BslI	CCNNNNNNNGG	1 cut(s)	528
BsmAI	GTCTC	1 cut(s)	536
BsmBI	CGTCTC	1 cut(s)	536
BsmFI	GGGAC	1 cut(s)	332
BsmI	GAATGC	1 cut(s)	120
BsnI	GGCC	3 cut(s)	106, 492, 756
Bsp119I	TTCGAA	1 cut(s)	446
Bsp143I	GATC	3 cut(s)	286, 359, 616
BspACI	CCGC	1 cut(s)	522
BspANI	GGCC	3 cut(s)	106, 492, 756
BspCNI	CTCAG	3 cut(s)	432, 556, 856
BspLI	GGNNCC	2 cut(s)	6, 407
BspMI	ACCTGC	2 cut(s)	515, 631
BspPI	GGATC	2 cut(s)	294, 367
BspQI	GCTCTTC	1 cut(s)	202
BspT104I	TTCGAA	1 cut(s)	446
BspT107I	GGYRCC	1 cut(s)	405
BsrDI	GCAATG	1 cut(s)	718
BsrFI	RCCGGY	1 cut(s)	752
BsrI	ACTGG	3 cut(s)	150, 597, 833
BssAI	RCCGGY	1 cut(s)	752
BssECI	CCNNGG	1 cut(s)	107
BssMI	GATC	3 cut(s)	286, 359, 616
Bst2UI	CCWGG	1 cut(s)	494
Bst4CI	ACNGT	3 cut(s)	136, 604, 746
Bst6I	CTCTTC	2 cut(s)	202, 628
BstAPI	GCANNNNNTGC	1 cut(s)	75
BstBI	TTCGAA	1 cut(s)	446
BstC8I	GCNNGC	5 cut(s)	50, 91, 232, 486, 490
BstDEI	CTNAG	3 cut(s)	419, 564, 864
BstF5I	GGATG	3 cut(s)	80, 553, 601
BstH2I	RGCGCY	1 cut(s)	55
BstHHI	GCGC	1 cut(s)	54
BstKTI	GATC	3 cut(s)	289, 362, 619
BstMAI	GTCTC	1 cut(s)	536
BstMBI	GATC	3 cut(s)	286, 359, 616
BstMWI	GCNNNNNNNGC	1 cut(s)	75
BstNI	CCWGG	1 cut(s)	494
BstNSI	RCATGY	2 cut(s)	682, 763
BstSCI	CCNGG	2 cut(s)	106, 492
BstV1I	GCAGC	4 cut(s)	720, 745, 853, 856
BstX2I	RGATCY	1 cut(s)	616
BstYI	RGATCY	1 cut(s)	616
BsuRI	GGCC	3 cut(s)	106, 492, 756
BtsCI	GGATG	3 cut(s)	80, 553, 601
BtsIMutI	CAGTG	1 cut(s)	840
BveI	ACCTGC	2 cut(s)	515, 631
Cac8I	GCNNGC	5 cut(s)	50, 91, 232, 486, 490
CfoI	GCGC	1 cut(s)	54
Cfr10I	RCCGGY	1 cut(s)	752
Csp6I	GTAC	3 cut(s)	202, 661, 821
CviAII	CATG	2 cut(s)	679, 760
CviQI	GTAC	3 cut(s)	202, 661, 821
DdeI	CTNAG	3 cut(s)	419, 564, 864
DpnI	GATC	3 cut(s)	288, 361, 618
DpnII	GATC	3 cut(s)	286, 359, 616
EaeI	YGGCCR	1 cut(s)	754
Eam1104I	CTCTTC	2 cut(s)	202, 628
EarI	CTCTTC	2 cut(s)	202, 628
Eco47III	AGCGCT	1 cut(s)	53
EcoRI	GAATTC	1 cut(s)	859
EcoRII	CCWGG	1 cut(s)	492
Esp3I	CGTCTC	1 cut(s)	536
FaeI	CATG	2 cut(s)	682, 763
FaiI	YATR	7 cut(s)	192, 301, 455, 665, 680, 761, 797
FalI	AAGNNNNNCTT	2 cut(s)	318, 350
FaqI	GGGAC	1 cut(s)	332
FatI	CATG	2 cut(s)	678, 759
Fnu4HI	GCNGC	4 cut(s)	709, 734, 842, 845
FokI	GGATG	3 cut(s)	87, 560, 608
Fsp4HI	GCNGC	4 cut(s)	709, 734, 842, 845
FspBI	CTAG	3 cut(s)	410, 705, 809
GlaI	GCGC	1 cut(s)	53
GluI	GCNGC	4 cut(s)	709, 734, 842, 845
HaeII	RGCGCY	1 cut(s)	55
HaeIII	GGCC	3 cut(s)	106, 492, 756
HapII	CCGG	2 cut(s)	107, 753
HhaI	GCGC	1 cut(s)	54
Hin1II	CATG	2 cut(s)	682, 763
Hin6I	GCGC	1 cut(s)	52
HinP1I	GCGC	1 cut(s)	52
HindIII	AAGCTT	2 cut(s)	232, 482
HinfI	GANTC	5 cut(s)	145, 183, 320, 770, 866
HpaII	CCGG	2 cut(s)	107, 753
HphI	GGTGA	1 cut(s)	655
Hpy166II	GTNNAC	1 cut(s)	478
Hpy188I	TCNGA	9 cut(s)	43, 58, 291, 422, 541, 573, 657, 693, 865
Hpy188III	TCNNGA	3 cut(s)	284, 335, 674
Hpy8I	GTNNAC	1 cut(s)	478
Hpy99I	CGWCG	1 cut(s)	614
HpyAV	CCTTC	1 cut(s)	760
HpyCH4III	ACNGT	3 cut(s)	136, 604, 746
HpyCH4V	TGCA	9 cut(s)	89, 124, 277, 434, 488, 628, 640, 733, 841
HpyF10VI	GCNNNNNNNGC	1 cut(s)	75
HpyF3I	CTNAG	3 cut(s)	419, 564, 864
Hsp92II	CATG	2 cut(s)	682, 763
HspAI	GCGC	1 cut(s)	52
Kzo9I	GATC	3 cut(s)	286, 359, 616
LguI	GCTCTTC	1 cut(s)	202
LmnI	GCTCC	2 cut(s)	4, 227
Lsp1109I	GCAGC	4 cut(s)	720, 745, 853, 856
LweI	GCATC	3 cut(s)	65, 697, 828
MaeI	CTAG	3 cut(s)	410, 705, 809
MaeIII	GTNAC	3 cut(s)	496, 643, 877
MalI	GATC	3 cut(s)	288, 361, 618
MboI	GATC	3 cut(s)	286, 359, 616
MboII	GAAGA	7 cut(s)	30, 34, 189, 259, 435, 645, 868
MflI	RGATCY	1 cut(s)	616
MlyI	GAGTC	4 cut(s)	192, 314, 764, 875
MnlI	CCTC	2 cut(s)	309, 373
MseI	TTAA	3 cut(s)	351, 588, 904
MspI	CCGG	2 cut(s)	107, 753
MspR9I	CCNGG	2 cut(s)	108, 494
Mva1269I	GAATGC	1 cut(s)	120
MvaI	CCWGG	1 cut(s)	494
MwoI	GCNNNNNNNGC	1 cut(s)	75
NciI	CCSGG	1 cut(s)	108
NdeII	GATC	3 cut(s)	286, 359, 616
NlaIII	CATG	2 cut(s)	682, 763
NlaIV	GGNNCC	2 cut(s)	6, 407
NmuCI	GTSAC	2 cut(s)	496, 643
NspI	RCATGY	2 cut(s)	682, 763
NspV	TTCGAA	1 cut(s)	446
PaqCI	CACCTGC	2 cut(s)	515, 631
PciI	ACATGT	1 cut(s)	678
PciSI	GCTCTTC	1 cut(s)	202
PctI	GAATGC	1 cut(s)	120
PfeI	GAWTC	1 cut(s)	145
PkrI	GCNGC	4 cut(s)	710, 735, 843, 846
PleI	GAGTC	4 cut(s)	191, 314, 764, 874
PpsI	GAGTC	4 cut(s)	191, 314, 764, 874
PscI	ACATGT	1 cut(s)	678
Psp6I	CCWGG	1 cut(s)	492
PspGI	CCWGG	1 cut(s)	492
PspN4I	GGNNCC	2 cut(s)	6, 407
PsuI	RGATCY	1 cut(s)	616
RsaI	GTAC	3 cut(s)	203, 662, 822
RsaNI	GTAC	3 cut(s)	202, 661, 821
SapI	GCTCTTC	1 cut(s)	202
SaqAI	TTAA	3 cut(s)	351, 588, 904
SatI	GCNGC	4 cut(s)	709, 734, 842, 845
Sau3AI	GATC	3 cut(s)	286, 359, 616
SchI	GAGTC	4 cut(s)	192, 314, 764, 875
ScrFI	CCNGG	2 cut(s)	108, 494
SfaNI	GCATC	3 cut(s)	65, 697, 828
SfuI	TTCGAA	1 cut(s)	446
SsiI	CCGC	1 cut(s)	522
SspMI	CTAG	3 cut(s)	410, 705, 809
StyD4I	CCNGG	2 cut(s)	106, 492
TaaI	ACNGT	3 cut(s)	136, 604, 746
TaqI	TCGA	1 cut(s)	446
TatI	WGTACW	1 cut(s)	660
TfiI	GAWTC	1 cut(s)	145
Tru1I	TTAA	3 cut(s)	351, 588, 904
Tru9I	TTAA	3 cut(s)	351, 588, 904
TscAI	CASTG	1 cut(s)	840
TseFI	GTSAC	2 cut(s)	496, 643
TseI	GCWGC	4 cut(s)	708, 733, 841, 844
Tsp45I	GTSAC	2 cut(s)	496, 643
TspDTI	ATGAA	3 cut(s)	26, 158, 593
TspGWI	ACGGA	4 cut(s)	176, 372, 560, 627
TspRI	CASTG	1 cut(s)	840
XapI	RAATTY	5 cut(s)	210, 424, 669, 814, 859
XceI	RCATGY	2 cut(s)	682, 763
XcmI	CCANNNNNNNNNTGG	1 cut(s)	233
XspI	CTAG	3 cut(s)	410, 705, 809

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.