Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0014733

Physical Location & Seq

Genomic Coordinates Reverse (-)

10179272 .. 10181454

Gene Structure 2183 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G091300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGGAGCCAATGAAGTCAAAGATGAACAAAATGTTTTCTCCAGCAACTAAGTTCTCTGTGGATGGCAAGGGAGGTCCCAAAGTTGAAGACTTGGAAATCAGGCCAGGGGGAATGTTGGTGCAAAAGCGCAATGCAGAGATGAATCCCAGTTCTGTTTCAATCCCCCCAATCAAAGTTAGAGTGAAGTATGGCTCTTCATACCACGAAATTCGTATAAGTCCCCAAGCAAGCTTTGGGGAGTTGAAGAAAATGTTGGCAGAACCGACTAAATTGCATCATCTGGATCAGAAGCTGATATTCAAAAACAAAGAGAGAGACTCCAAAGAATATCTTGATGTGGCAAGAGTTAAAGATGGATCAAAACTTGTGTTGGAGGAGGACATTGTGAGTAGAGAAAGGAGGTGTGTGGAGTTGCTCAGAAATGCAAATGCAGAGAAGTCTTCCAAATCCTTAGCAGAGATCAACTTGGAAGTGGACAAGCTTGCTGGCCAGGTCACAGCTTTGGAAGCAACAGCTTCTACAGCTGGGAAAGTTGCAGAGACTGATGTGGACAATTTGACTGAACTTCTGATGATGAAGTTAATTAAACTGGATGGTATTGTTGCAGAGGGAGATTTAAAATTGCAGAGAAGACTGCAGGTGAAAAGAGTTCAGAAGTACATAGGAATTCTGGATATGTTGAAGTATCAAAGTTCCAAATCTAGCAGCAATGGTGCTAAAATCCAATTGCAGCAACAAGAAAACCCAATTGGCCACATGCCAAGGGACTCAAAGCCAGTTCAGAAACAACGAGCGCCATCGAAGCTAGAAAAATCTGTTCGCACAATTCCGGCGCAGCAGCAACCGCAGAAGCATTCTGAGTCAGTTGTGGTAACAACAAAATGGGAGACTTTTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0006508 GO:0006511 GO:0006515 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010498 GO:0019538 GO:0019941 GO:0030163 GO:0033554 GO:0035966 GO:0035967 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051603 GO:0051716 GO:0051788 GO:0070887 GO:0071218 GO:0071310 GO:0071629 GO:0071704 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BAG ubiquitin

Protein Analysis

300

Amino Acids

33.57

Weight (kDa)

9.57

Isoelectric Point (pI)

45.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014733)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g01500 FvH4_5g01500
malus_domestica	MD06G1072800.v1.1
prunus_persica	Prupe.5G091300_v2.0.a1
pyrus_communis	pycom04g06050 pycom06g07230
rosa_chinensis	RchiOBHm_Chr7g0199191
rosa_laevigata	RLG00000003807
rosa_multiflora	Rmu_sc0006266.1_g000068
rosa_roxburghii	Rroxscaffold_3G00256970
rosa_rugosa	Rorug07G0053200 Rorug07G0053300
rosa_samantha	Rh7AG177000 Rh7BG180500 Rh7CG186200 Rh7DG180000
rosa_wichuraiana	Rw7G015570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	628
Acc36I	ACCTGC	1 cut(s)	628
AciI	CCGC	1 cut(s)	845
AclWI	GGATC	2 cut(s)	291, 364
AcoI	YGGCCR	2 cut(s)	487, 751
AcsI	RAATTY	2 cut(s)	207, 666
AfaI	GTAC	1 cut(s)	659
AgsI	TTSAA	5 cut(s)	86, 159, 244, 301, 682
AjnI	CCWGG	2 cut(s)	103, 489
AjuI	GAANNNNNNNTTGG	4 cut(s)	236, 268, 732, 764
AluBI	AGCT	7 cut(s)	231, 292, 481, 500, 515, 524, 805
AluI	AGCT	7 cut(s)	231, 292, 481, 500, 515, 524, 805
Alw26I	GTCTC	3 cut(s)	309, 533, 881
AlwI	GGATC	2 cut(s)	291, 364
AlwNI	CAGNNNCTG	2 cut(s)	292, 542
AoxI	GGCC	3 cut(s)	101, 487, 751
ApeKI	GCWGC	4 cut(s)	705, 730, 835, 838
ApoI	RAATTY	2 cut(s)	207, 666
AspLEI	GCGC	3 cut(s)	129, 796, 835
AspS9I	GGNCC	1 cut(s)	74
AsuHPI	GGTGA	1 cut(s)	652
AvaII	GGWCC	1 cut(s)	74
BalI	TGGCCA	2 cut(s)	489, 753
BbsI	GAAGAC	3 cut(s)	93, 432, 637
BbvI	GCAGC	4 cut(s)	717, 742, 847, 850
BccI	CCATC	4 cut(s)	56, 347, 587, 805
BcgI	CGANNNNNNTGC	2 cut(s)	253, 287
BciT130I	CCWGG	2 cut(s)	105, 491
BcoDI	GTCTC	3 cut(s)	309, 533, 881
BfaI	CTAG	2 cut(s)	702, 806
BfmI	CTRYAG	2 cut(s)	519, 635
BfoI	RGCGCY	1 cut(s)	797
BfuAI	ACCTGC	1 cut(s)	628
BisI	GCNGC	4 cut(s)	706, 731, 836, 839
BlsI	GCNGC	4 cut(s)	707, 732, 837, 840
Bme1390I	CCNGG	2 cut(s)	105, 491
Bme18I	GGWCC	1 cut(s)	74
BmgT120I	GGNCC	1 cut(s)	74
BmiI	GGNNCC	2 cut(s)	6, 76
BmrFI	CCNGG	2 cut(s)	105, 491
BmrI	ACTGGG	1 cut(s)	141
BmsI	GCATC	1 cut(s)	283
BmuI	ACTGGG	1 cut(s)	141
BpiI	GAAGAC	3 cut(s)	93, 432, 637
BplI	GAGNNNNNCTC	2 cut(s)	302, 334
BpmI	CTGGAG	1 cut(s)	24
Bpu10I	CCTNAGC	1 cut(s)	451
BsaJI	CCNNGG	2 cut(s)	104, 761
Bse1I	ACTGG	3 cut(s)	147, 594, 776
Bse3DI	GCAATG	2 cut(s)	136, 715
BseBI	CCWGG	2 cut(s)	105, 491
BseDI	CCNNGG	2 cut(s)	104, 761
BseGI	GGATG	2 cut(s)	67, 598
BseMI	GCAATG	2 cut(s)	136, 715
BseMII	CTCAG	2 cut(s)	430, 849
BseNI	ACTGG	3 cut(s)	147, 594, 776
BseRI	GAGGAG	1 cut(s)	389
BseXI	GCAGC	4 cut(s)	717, 742, 847, 850
BseYI	CCCAGC	1 cut(s)	524
BshFI	GGCC	3 cut(s)	103, 489, 753
BsiSI	CCGG	1 cut(s)	830
BslFI	GGGAC	3 cut(s)	60, 204, 779
BsmAI	GTCTC	3 cut(s)	309, 533, 881
BsmFI	GGGAC	3 cut(s)	60, 204, 779
BsmI	GAATGC	1 cut(s)	853
BsnI	GGCC	3 cut(s)	103, 489, 753
Bsp143I	GATC	3 cut(s)	283, 356, 459
BspACI	CCGC	1 cut(s)	845
BspANI	GGCC	3 cut(s)	103, 489, 753
BspCNI	CTCAG	2 cut(s)	429, 850
BspLI	GGNNCC	2 cut(s)	6, 76
BspMAI	CTGCAG	1 cut(s)	639
BspMI	ACCTGC	1 cut(s)	628
BspPI	GGATC	2 cut(s)	291, 364
BspQI	GCTCTTC	1 cut(s)	199
BsrDI	GCAATG	2 cut(s)	136, 715
BsrI	ACTGG	3 cut(s)	147, 594, 776
BssECI	CCNNGG	2 cut(s)	104, 761
BssMI	GATC	3 cut(s)	283, 356, 459
BssT1I	CCWWGG	1 cut(s)	761
Bst2UI	CCWGG	2 cut(s)	105, 491
Bst6I	CTCTTC	1 cut(s)	199
BstC8I	GCNNGC	3 cut(s)	229, 483, 487
BstDEI	CTNAG	4 cut(s)	48, 416, 451, 858
BstF5I	GGATG	2 cut(s)	67, 598
BstH2I	RGCGCY	1 cut(s)	797
BstHHI	GCGC	3 cut(s)	129, 796, 835
BstKTI	GATC	3 cut(s)	286, 359, 462
BstMAI	GTCTC	3 cut(s)	309, 533, 881
BstMBI	GATC	3 cut(s)	283, 356, 459
BstMWI	GCNNNNNNNGC	4 cut(s)	506, 521, 802, 844
BstNI	CCWGG	2 cut(s)	105, 491
BstNSI	RCATGY	1 cut(s)	760
BstSCI	CCNGG	2 cut(s)	103, 489
BstSFI	CTRYAG	2 cut(s)	519, 635
BstV1I	GCAGC	4 cut(s)	717, 742, 847, 850
BstV2I	GAAGAC	3 cut(s)	93, 432, 637
BsuRI	GGCC	3 cut(s)	103, 489, 753
BtsCI	GGATG	2 cut(s)	67, 598
BveI	ACCTGC	1 cut(s)	628
Cac8I	GCNNGC	3 cut(s)	229, 483, 487
CaiI	CAGNNNCTG	2 cut(s)	292, 542
CfoI	GCGC	3 cut(s)	129, 796, 835
Cfr13I	GGNCC	1 cut(s)	74
Csp6I	GTAC	1 cut(s)	658
CviAII	CATG	1 cut(s)	757
CviQI	GTAC	1 cut(s)	658
DdeI	CTNAG	4 cut(s)	48, 416, 451, 858
DpnI	GATC	3 cut(s)	285, 358, 461
DpnII	GATC	3 cut(s)	283, 356, 459
DraI	TTTAAA	1 cut(s)	618
EaeI	YGGCCR	2 cut(s)	487, 751
Eam1104I	CTCTTC	1 cut(s)	199
EarI	CTCTTC	1 cut(s)	199
Eco130I	CCWWGG	1 cut(s)	761
Eco47I	GGWCC	1 cut(s)	74
EcoO109I	RGGNCCY	1 cut(s)	74
EcoRI	GAATTC	1 cut(s)	666
EcoRII	CCWGG	2 cut(s)	103, 489
EcoT14I	CCWWGG	1 cut(s)	761
ErhI	CCWWGG	1 cut(s)	761
FaeI	CATG	1 cut(s)	760
FaiI	YATR	6 cut(s)	189, 199, 215, 662, 677, 758
FalI	AAGNNNNNCTT	2 cut(s)	315, 347
FaqI	GGGAC	3 cut(s)	60, 204, 779
FatI	CATG	1 cut(s)	756
Fnu4HI	GCNGC	4 cut(s)	706, 731, 836, 839
FokI	GGATG	2 cut(s)	74, 605
Fsp4HI	GCNGC	4 cut(s)	706, 731, 836, 839
FspBI	CTAG	2 cut(s)	702, 806
GlaI	GCGC	3 cut(s)	128, 795, 834
GluI	GCNGC	4 cut(s)	706, 731, 836, 839
GsaI	CCCAGC	1 cut(s)	528
GsuI	CTGGAG	1 cut(s)	24
HaeII	RGCGCY	1 cut(s)	797
HaeIII	GGCC	3 cut(s)	103, 489, 753
HapII	CCGG	1 cut(s)	830
HhaI	GCGC	3 cut(s)	129, 796, 835
Hin1II	CATG	1 cut(s)	760
Hin6I	GCGC	3 cut(s)	127, 794, 833
HinP1I	GCGC	3 cut(s)	127, 794, 833
HindIII	AAGCTT	2 cut(s)	229, 479
HinfI	GANTC	4 cut(s)	142, 317, 767, 860
HpaII	CCGG	1 cut(s)	830
HphI	GGTGA	1 cut(s)	652
Hpy166II	GTNNAC	2 cut(s)	475, 550
Hpy188I	TCNGA	6 cut(s)	288, 419, 570, 654, 783, 859
Hpy188III	TCNNGA	3 cut(s)	281, 332, 671
Hpy8I	GTNNAC	2 cut(s)	475, 550
HpyF10VI	GCNNNNNNNGC	4 cut(s)	506, 521, 802, 844
HpyF3I	CTNAG	4 cut(s)	48, 416, 451, 858
Hsp92II	CATG	1 cut(s)	760
HspAI	GCGC	3 cut(s)	127, 794, 833
Kzo9I	GATC	3 cut(s)	283, 356, 459
LguI	GCTCTTC	1 cut(s)	199
LmnI	GCTCC	1 cut(s)	4
Lsp1109I	GCAGC	4 cut(s)	717, 742, 847, 850
LweI	GCATC	1 cut(s)	283
MaeI	CTAG	2 cut(s)	702, 806
MaeIII	GTNAC	2 cut(s)	493, 871
MalI	GATC	3 cut(s)	285, 358, 461
MboI	GATC	3 cut(s)	283, 356, 459
MboII	GAAGA	5 cut(s)	98, 186, 256, 432, 642
MfeI	CAATTG	2 cut(s)	725, 747
MlsI	TGGCCA	2 cut(s)	489, 753
MluCI	AATT	9 cut(s)	207, 269, 553, 582, 620, 666, 725, 747, 825
MluNI	TGGCCA	2 cut(s)	489, 753
MlyI	GAGTC	3 cut(s)	311, 761, 869
MmeI	TCCRAC	1 cut(s)	351
MnlI	CCTC	5 cut(s)	65, 367, 370, 393, 601
Mox20I	TGGCCA	2 cut(s)	489, 753
MscI	TGGCCA	2 cut(s)	489, 753
MseI	TTAA	5 cut(s)	348, 581, 585, 617, 898
Msp20I	TGGCCA	2 cut(s)	489, 753
MspA1I	CMGCKG	1 cut(s)	524
MspI	CCGG	1 cut(s)	830
MspR9I	CCNGG	2 cut(s)	105, 491
MunI	CAATTG	2 cut(s)	725, 747
Mva1269I	GAATGC	1 cut(s)	853
MvaI	CCWGG	2 cut(s)	105, 491
MwoI	GCNNNNNNNGC	4 cut(s)	506, 521, 802, 844
NdeII	GATC	3 cut(s)	283, 356, 459
NlaIII	CATG	1 cut(s)	760
NlaIV	GGNNCC	2 cut(s)	6, 76
NmuCI	GTSAC	1 cut(s)	493
NspI	RCATGY	1 cut(s)	760
PacI	TTAATTAA	1 cut(s)	585
PaqCI	CACCTGC	1 cut(s)	628
PciSI	GCTCTTC	1 cut(s)	199
PctI	GAATGC	1 cut(s)	853
PfeI	GAWTC	1 cut(s)	142
PkrI	GCNGC	4 cut(s)	707, 732, 837, 840
PleI	GAGTC	3 cut(s)	311, 761, 868
PpsI	GAGTC	3 cut(s)	311, 761, 868
PpuMI	RGGWCCY	1 cut(s)	74
Psp5II	RGGWCCY	1 cut(s)	74
Psp6I	CCWGG	2 cut(s)	103, 489
PspFI	CCCAGC	1 cut(s)	524
PspGI	CCWGG	2 cut(s)	103, 489
PspN4I	GGNNCC	2 cut(s)	6, 76
PspPI	GGNCC	1 cut(s)	74
PspPPI	RGGWCCY	1 cut(s)	74
PstI	CTGCAG	1 cut(s)	639
PstNI	CAGNNNCTG	2 cut(s)	292, 542
PvuII	CAGCTG	1 cut(s)	524
RsaI	GTAC	1 cut(s)	659
RsaNI	GTAC	1 cut(s)	658
SapI	GCTCTTC	1 cut(s)	199
SaqAI	TTAA	5 cut(s)	348, 581, 585, 617, 898
SatI	GCNGC	4 cut(s)	706, 731, 836, 839
Sau3AI	GATC	3 cut(s)	283, 356, 459
Sau96I	GGNCC	1 cut(s)	74
SchI	GAGTC	3 cut(s)	311, 761, 869
ScrFI	CCNGG	2 cut(s)	105, 491
SfaNI	GCATC	1 cut(s)	283
SfcI	CTRYAG	2 cut(s)	519, 635
SinI	GGWCC	1 cut(s)	74
Sse9I	AATT	9 cut(s)	207, 269, 553, 582, 620, 666, 725, 747, 825
SsiI	CCGC	1 cut(s)	845
SspMI	CTAG	2 cut(s)	702, 806
StyD4I	CCNGG	2 cut(s)	103, 489
StyI	CCWWGG	1 cut(s)	761
TaqI	TCGA	1 cut(s)	800
TasI	AATT	9 cut(s)	207, 269, 553, 582, 620, 666, 725, 747, 825
TatI	WGTACW	1 cut(s)	657
TfiI	GAWTC	1 cut(s)	142
Tru1I	TTAA	5 cut(s)	348, 581, 585, 617, 898
Tru9I	TTAA	5 cut(s)	348, 581, 585, 617, 898
TseFI	GTSAC	1 cut(s)	493
TseI	GCWGC	4 cut(s)	705, 730, 835, 838
Tsp45I	GTSAC	1 cut(s)	493
TspDTI	ATGAA	5 cut(s)	26, 38, 155, 186, 590
VpaK11BI	GGWCC	1 cut(s)	74
XapI	RAATTY	2 cut(s)	207, 666
XceI	RCATGY	1 cut(s)	760
XcmI	CCANNNNNNNNNTGG	1 cut(s)	230
XspI	CTAG	2 cut(s)	702, 806

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.