Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0014733

Physical Location & Seq

Genomic Coordinates Forward (+)

15540269 .. 15543081

Gene Structure 2813 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG177000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGGAGCCAATGAAGTCAAAGATCAACAAAATGTTTTCACCAGCAAGTAAAGGCTCTGCGGATGGCAGGGGAGTAACGGATTTGGCAGACTTGGAAATCAGGCCTTGTGGAATGTTGGTTCAAAAGCGCAATGGGGAGACGAATCCAACTTCTGTTTCGATTCCCATAGTCAGAGTTAGAGTCAAGTATGGTTCTTTGTATCACGAAATTAGTATCAGCTCCCATGCTAGCTTTGGAGAGTTGAAGAAAATGTTGGCAGGACCAACTAAACTGCATCATGAAGATCAGAAGCTGATATACAAAAACAAAGAGAGAGATTCCAAAGAGTATCTTGATGTGGCAAGAGTTAAAAATGGATCCAAAATTGTGTTGGTGGAAGACATTGTGAGTAGAGAAAAAAGGTGCCTAGAGTTACTCAGAAATGCAAATTCTCACAAGTCTTCGAAAGCCTTGTCTGAAATCAACTTGGAAGTTGACAAGCTTGCAGGCCAGGTCACAGCTTTGGAAGCAACAGCTTCAAATGGTGGGAAAGTAGTGGAGAAAGATGTGGACAATTTGACGGAGCTCTTGATGATGAGGTTGATTAAACTTGATGGAATTGTTGCAGATGGAGATTTAAAATTGCAGAGAAGAGTGCTGGTGAGAAGAGTTCAGAAGTACATTGAGATTCTTGATATGTTGAAGTACCAGAATTCCAAATCTAGCAGCAATGGGGCTAAAATCCAATTGCAGAAACAAGATAACCCAATTGGCCAAATTTCGAGAGACTTGAGGCCAATGCAGAAACAGCAACCGCCGACAAAAATGGGAAATTCTGTAAGGACAATACCAAAGATGCAGCAACAACAGCAAAGGCATTCTGAGTCAGTAGTTGTTACAACTAAATGGGAAACTTTCGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0006508 GO:0006511 GO:0006515 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010498 GO:0019538 GO:0019941 GO:0030163 GO:0033554 GO:0035966 GO:0035967 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051603 GO:0051716 GO:0051788 GO:0070887 GO:0071218 GO:0071310 GO:0071629 GO:0071704 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BAG ubiquitin

Protein Analysis

300

Amino Acids

33.79

Weight (kDa)

9.68

Isoelectric Point (pI)

38.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BAG	PF02179	152 - 226	2.7e-16	BAG domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0014733)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g01500 FvH4_5g01500
malus_domestica	MD06G1072800.v1.1
prunus_persica	Prupe.5G091300_v2.0.a1
pyrus_communis	pycom04g06050 pycom06g07230
rosa_chinensis	RchiOBHm_Chr7g0199191
rosa_laevigata	RLG00000003807
rosa_multiflora	Rmu_sc0006266.1_g000068
rosa_roxburghii	Rroxscaffold_3G00256970
rosa_rugosa	Rorug07G0053200 Rorug07G0053300
rosa_samantha	Rh7AG177000 Rh7BG180500 Rh7CG186200 Rh7DG180000
rosa_wichuraiana	Rw7G015570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	402
AciI	CCGC	2 cut(s)	59, 794
AclWI	GGATC	2 cut(s)	351, 364
AcoI	YGGCCR	1 cut(s)	751
AcsI	RAATTY	4 cut(s)	427, 691, 756, 811
AfaI	GTAC	2 cut(s)	659, 686
AgsI	TTSAA	4 cut(s)	122, 244, 519, 682
AjnI	CCWGG	1 cut(s)	489
AjuI	GAANNNNNNNTTGG	4 cut(s)	139, 171, 236, 268
AloI	GAACNNNNNNTCC	2 cut(s)	102, 134
AluBI	AGCT	7 cut(s)	219, 231, 292, 481, 500, 515, 565
AluI	AGCT	7 cut(s)	219, 231, 292, 481, 500, 515, 565
Alw21I	GWGCWC	1 cut(s)	567
Alw26I	GTCTC	2 cut(s)	131, 759
AlwI	GGATC	2 cut(s)	351, 364
AlwNI	CAGNNNCTG	1 cut(s)	292
AoxI	GGCC	4 cut(s)	101, 487, 751, 773
ApeKI	GCWGC	2 cut(s)	705, 838
ApoI	RAATTY	4 cut(s)	427, 691, 756, 811
ArsI	GACNNNNNNTTYG	2 cut(s)	437, 469
AspLEI	GCGC	1 cut(s)	129
AspS9I	GGNCC	1 cut(s)	260
AsuHPI	GGTGA	2 cut(s)	30, 652
AsuII	TTCGAA	1 cut(s)	443
AsuNHI	GCTAGC	1 cut(s)	227
AvaII	GGWCC	1 cut(s)	260
BalI	TGGCCA	1 cut(s)	753
BamHI	GGATCC	1 cut(s)	356
BanI	GGYRCC	1 cut(s)	402
BanII	GRGCYC	1 cut(s)	567
BarI	GAAGNNNNNNTAC	2 cut(s)	281, 313
BbsI	GAAGAC	2 cut(s)	384, 432
Bbv12I	GWGCWC	1 cut(s)	567
BbvI	GCAGC	2 cut(s)	717, 850
BccI	CCATC	3 cut(s)	56, 587, 602
BciT130I	CCWGG	1 cut(s)	491
BcoDI	GTCTC	2 cut(s)	131, 759
BfaI	CTAG	3 cut(s)	228, 407, 702
BisI	GCNGC	2 cut(s)	706, 839
BlsI	GCNGC	2 cut(s)	707, 840
Bme1390I	CCNGG	1 cut(s)	491
Bme18I	GGWCC	1 cut(s)	260
BmgT120I	GGNCC	1 cut(s)	260
BmiI	GGNNCC	3 cut(s)	6, 358, 404
BmrFI	CCNGG	1 cut(s)	491
BmsI	GCATC	2 cut(s)	283, 825
BmtI	GCTAGC	1 cut(s)	231
BpiI	GAAGAC	2 cut(s)	384, 432
Bpu14I	TTCGAA	1 cut(s)	443
BpuEI	CTTGAG	1 cut(s)	790
Bse3DI	GCAATG	2 cut(s)	136, 715
BseBI	CCWGG	1 cut(s)	491
BseGI	GGATG	1 cut(s)	67
BseMI	GCAATG	2 cut(s)	136, 715
BseMII	CTCAG	2 cut(s)	430, 852
BseXI	GCAGC	2 cut(s)	717, 850
BshFI	GGCC	4 cut(s)	103, 489, 753, 775
BshNI	GGYRCC	1 cut(s)	402
BsiHKAI	GWGCWC	1 cut(s)	567
BsmAI	GTCTC	2 cut(s)	131, 759
BsmBI	CGTCTC	1 cut(s)	131
BsmI	GAATGC	1 cut(s)	856
BsnI	GGCC	4 cut(s)	103, 489, 753, 775
Bsp119I	TTCGAA	1 cut(s)	443
Bsp1286I	GDGCHC	1 cut(s)	567
Bsp143I	GATC	3 cut(s)	21, 283, 356
BspACI	CCGC	2 cut(s)	59, 794
BspANI	GGCC	4 cut(s)	103, 489, 753, 775
BspCNI	CTCAG	2 cut(s)	429, 853
BspHI	TCATGA	1 cut(s)	277
BspLI	GGNNCC	3 cut(s)	6, 358, 404
BspOI	GCTAGC	1 cut(s)	231
BspPI	GGATC	2 cut(s)	351, 364
BspT104I	TTCGAA	1 cut(s)	443
BspT107I	GGYRCC	1 cut(s)	402
BsrDI	GCAATG	2 cut(s)	136, 715
BssMI	GATC	3 cut(s)	21, 283, 356
Bst2UI	CCWGG	1 cut(s)	491
Bst6I	CTCTTC	2 cut(s)	625, 640
BstBI	TTCGAA	1 cut(s)	443
BstC8I	GCNNGC	3 cut(s)	229, 483, 487
BstDEI	CTNAG	2 cut(s)	416, 861
BstF5I	GGATG	1 cut(s)	67
BstHHI	GCGC	1 cut(s)	129
BstKTI	GATC	3 cut(s)	24, 286, 359
BstMAI	GTCTC	2 cut(s)	131, 759
BstMBI	GATC	3 cut(s)	21, 283, 356
BstMWI	GCNNNNNNNGC	3 cut(s)	506, 787, 847
BstNI	CCWGG	1 cut(s)	491
BstSCI	CCNGG	1 cut(s)	489
BstV1I	GCAGC	2 cut(s)	717, 850
BstV2I	GAAGAC	2 cut(s)	384, 432
BstX2I	RGATCY	1 cut(s)	356
BstYI	RGATCY	1 cut(s)	356
BsuRI	GGCC	4 cut(s)	103, 489, 753, 775
BtsCI	GGATG	1 cut(s)	67
Cac8I	GCNNGC	3 cut(s)	229, 483, 487
CaiI	CAGNNNCTG	1 cut(s)	292
CciI	TCATGA	1 cut(s)	277
CfoI	GCGC	1 cut(s)	129
Cfr13I	GGNCC	1 cut(s)	260
Csp6I	GTAC	2 cut(s)	658, 685
CviAII	CATG	2 cut(s)	224, 278
CviQI	GTAC	2 cut(s)	658, 685
DdeI	CTNAG	2 cut(s)	416, 861
DpnI	GATC	3 cut(s)	23, 285, 358
DpnII	GATC	3 cut(s)	21, 283, 356
DraI	TTTAAA	1 cut(s)	618
EaeI	YGGCCR	1 cut(s)	751
Eam1104I	CTCTTC	2 cut(s)	625, 640
EarI	CTCTTC	2 cut(s)	625, 640
Ecl136II	GAGCTC	1 cut(s)	565
Eco147I	AGGCCT	1 cut(s)	103
Eco24I	GRGCYC	1 cut(s)	567
Eco47I	GGWCC	1 cut(s)	260
Eco53kI	GAGCTC	1 cut(s)	565
EcoICRI	GAGCTC	1 cut(s)	565
EcoRI	GAATTC	1 cut(s)	691
EcoRII	CCWGG	1 cut(s)	489
EcoT38I	GRGCYC	1 cut(s)	567
Esp3I	CGTCTC	1 cut(s)	131
FaeI	CATG	2 cut(s)	227, 281
FaiI	YATR	6 cut(s)	167, 189, 225, 279, 298, 677
FalI	AAGNNNNNCTT	2 cut(s)	315, 347
FatI	CATG	2 cut(s)	223, 277
Fnu4HI	GCNGC	2 cut(s)	706, 839
FokI	GGATG	1 cut(s)	74
FriOI	GRGCYC	1 cut(s)	567
Fsp4HI	GCNGC	2 cut(s)	706, 839
FspBI	CTAG	3 cut(s)	228, 407, 702
GlaI	GCGC	1 cut(s)	128
GluI	GCNGC	2 cut(s)	706, 839
HaeIII	GGCC	4 cut(s)	103, 489, 753, 775
HhaI	GCGC	1 cut(s)	129
Hin1II	CATG	2 cut(s)	227, 281
Hin6I	GCGC	1 cut(s)	127
HinP1I	GCGC	1 cut(s)	127
HincII	GTYRAC	1 cut(s)	475
HindII	GTYRAC	1 cut(s)	475
HindIII	AAGCTT	1 cut(s)	479
HinfI	GANTC	6 cut(s)	142, 160, 180, 317, 667, 863
HphI	GGTGA	2 cut(s)	30, 652
Hpy166II	GTNNAC	2 cut(s)	475, 550
Hpy188I	TCNGA	6 cut(s)	173, 288, 419, 457, 654, 862
Hpy188III	TCNNGA	6 cut(s)	203, 278, 332, 568, 671, 762
Hpy8I	GTNNAC	2 cut(s)	475, 550
HpyCH4V	TGCA	8 cut(s)	274, 425, 485, 605, 625, 730, 781, 838
HpyF10VI	GCNNNNNNNGC	3 cut(s)	506, 787, 847
HpyF3I	CTNAG	2 cut(s)	416, 861
Hsp92II	CATG	2 cut(s)	227, 281
HspAI	GCGC	1 cut(s)	127
Kzo9I	GATC	3 cut(s)	21, 283, 356
LmnI	GCTCC	3 cut(s)	4, 224, 562
LpnPI	CCDG	9 cut(s)	52, 54, 85, 243, 471, 476, 503, 623, 701
Lsp1109I	GCAGC	2 cut(s)	717, 850
LweI	GCATC	2 cut(s)	283, 825
MaeI	CTAG	3 cut(s)	228, 407, 702
MaeIII	GTNAC	4 cut(s)	73, 411, 493, 874
MalI	GATC	3 cut(s)	23, 285, 358
MboI	GATC	3 cut(s)	21, 283, 356
MboII	GAAGA	6 cut(s)	256, 293, 389, 432, 642, 657
MfeI	CAATTG	2 cut(s)	725, 747
MflI	RGATCY	1 cut(s)	356
MhlI	GDGCHC	1 cut(s)	567
MlsI	TGGCCA	1 cut(s)	753
MluNI	TGGCCA	1 cut(s)	753
MlyI	GAGTC	2 cut(s)	189, 872
MmeI	TCCRAC	1 cut(s)	170
MnlI	CCTC	2 cut(s)	570, 765
Mox20I	TGGCCA	1 cut(s)	753
MscI	TGGCCA	1 cut(s)	753
MseI	TTAA	3 cut(s)	348, 585, 617
Msp20I	TGGCCA	1 cut(s)	753
MspR9I	CCNGG	1 cut(s)	491
MunI	CAATTG	2 cut(s)	725, 747
Mva1269I	GAATGC	1 cut(s)	856
MvaI	CCWGG	1 cut(s)	491
MwoI	GCNNNNNNNGC	3 cut(s)	506, 787, 847
NdeII	GATC	3 cut(s)	21, 283, 356
NheI	GCTAGC	1 cut(s)	227
NlaIII	CATG	2 cut(s)	227, 281
NlaIV	GGNNCC	3 cut(s)	6, 358, 404
NmuCI	GTSAC	1 cut(s)	493
NspV	TTCGAA	1 cut(s)	443
PagI	TCATGA	1 cut(s)	277
PceI	AGGCCT	1 cut(s)	103
PctI	GAATGC	1 cut(s)	856
PfeI	GAWTC	4 cut(s)	142, 160, 317, 667
PkrI	GCNGC	2 cut(s)	707, 840
PleI	GAGTC	2 cut(s)	188, 871
PpsI	GAGTC	2 cut(s)	188, 871
Psp124BI	GAGCTC	1 cut(s)	567
Psp6I	CCWGG	1 cut(s)	489
PspGI	CCWGG	1 cut(s)	489
PspN4I	GGNNCC	3 cut(s)	6, 358, 404
PspPI	GGNCC	1 cut(s)	260
PstNI	CAGNNNCTG	1 cut(s)	292
PsuI	RGATCY	1 cut(s)	356
RsaI	GTAC	2 cut(s)	659, 686
RsaNI	GTAC	2 cut(s)	658, 685
SacI	GAGCTC	1 cut(s)	567
SaqAI	TTAA	3 cut(s)	348, 585, 617
SatI	GCNGC	2 cut(s)	706, 839
Sau3AI	GATC	3 cut(s)	21, 283, 356
Sau96I	GGNCC	1 cut(s)	260
SchI	GAGTC	2 cut(s)	189, 872
ScrFI	CCNGG	1 cut(s)	491
SduI	GDGCHC	1 cut(s)	567
SfaNI	GCATC	2 cut(s)	283, 825
SfuI	TTCGAA	1 cut(s)	443
SinI	GGWCC	1 cut(s)	260
SmlI	CTYRAG	1 cut(s)	769
SmoI	CTYRAG	1 cut(s)	769
SseBI	AGGCCT	1 cut(s)	103
SsiI	CCGC	2 cut(s)	59, 794
SspMI	CTAG	3 cut(s)	228, 407, 702
SstI	GAGCTC	1 cut(s)	567
StuI	AGGCCT	1 cut(s)	103
StyD4I	CCNGG	1 cut(s)	489
TaqI	TCGA	4 cut(s)	158, 443, 761, 897
TatI	WGTACW	1 cut(s)	657
TfiI	GAWTC	4 cut(s)	142, 160, 317, 667
Tru1I	TTAA	3 cut(s)	348, 585, 617
Tru9I	TTAA	3 cut(s)	348, 585, 617
TseFI	GTSAC	1 cut(s)	493
TseI	GCWGC	2 cut(s)	705, 838
Tsp45I	GTSAC	1 cut(s)	493
TspDTI	ATGAA	2 cut(s)	26, 294
TspGWI	ACGGA	2 cut(s)	92, 575
VpaK11BI	GGWCC	1 cut(s)	260
XapI	RAATTY	4 cut(s)	427, 691, 756, 811
XcmI	CCANNNNNNNNNTGG	2 cut(s)	230, 367
XspI	CTAG	3 cut(s)	228, 407, 702

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.