Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0014733

Physical Location & Seq

Genomic Coordinates Reverse (-)

3778676 .. 3780199

Gene Structure 1524 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0053300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 165 bp

ATGGCGAGCTACGCGGTCTCAGTTGACAAGGCCAAGGCTTTCTTGCGCTCTCAGTATCAGAATGAGGAAAAGTGGGCGCTCAACATGAAACTGCTCCGTGCTGTCGGTGTCTTTGCAGGATCAGTGATTCTGATGCGGACTTATGGTGATATGATGGCAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0006508 GO:0006511 GO:0006515 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010498 GO:0019538 GO:0019941 GO:0030163 GO:0033554 GO:0035966 GO:0035967 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051603 GO:0051716 GO:0051788 GO:0070887 GO:0071218 GO:0071310 GO:0071629 GO:0071704 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BAG ubiquitin

Protein Analysis

54

Amino Acids

6.08

Weight (kDa)

9.6

Isoelectric Point (pI)

32.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014733)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g01500 FvH4_5g01500
malus_domestica	MD06G1072800.v1.1
prunus_persica	Prupe.5G091300_v2.0.a1
pyrus_communis	pycom04g06050 pycom06g07230
rosa_chinensis	RchiOBHm_Chr7g0199191
rosa_laevigata	RLG00000003807
rosa_multiflora	Rmu_sc0006266.1_g000068
rosa_roxburghii	Rroxscaffold_3G00256970
rosa_rugosa	Rorug07G0053200 Rorug07G0053300
rosa_samantha	Rh7AG177000 Rh7BG180500 Rh7CG186200 Rh7DG180000
rosa_wichuraiana	Rw7G015570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	14
AciI	CCGC	2 cut(s)	14, 136
AclWI	GGATC	1 cut(s)	127
AluBI	AGCT	1 cut(s)	9
AluI	AGCT	1 cut(s)	9
Alw26I	GTCTC	1 cut(s)	22
AlwI	GGATC	1 cut(s)	127
AoxI	GGCC	1 cut(s)	30
AspLEI	GCGC	2 cut(s)	48, 79
AsuHPI	GGTGA	1 cut(s)	158
BccI	CCATC	1 cut(s)	148
BcoDI	GTCTC	1 cut(s)	22
BfoI	RGCGCY	1 cut(s)	80
BmsI	GCATC	1 cut(s)	123
BsaI	GGTCTC	1 cut(s)	22
BsaJI	CCNNGG	1 cut(s)	33
BseDI	CCNNGG	1 cut(s)	33
BseMII	CTCAG	2 cut(s)	33, 65
Bsh1236I	CGCG	1 cut(s)	14
BshFI	GGCC	1 cut(s)	32
BsmAI	GTCTC	1 cut(s)	22
BsnI	GGCC	1 cut(s)	32
Bso31I	GGTCTC	1 cut(s)	22
Bsp143I	GATC	1 cut(s)	119
BspACI	CCGC	2 cut(s)	14, 136
BspANI	GGCC	1 cut(s)	32
BspCNI	CTCAG	2 cut(s)	32, 64
BspFNI	CGCG	1 cut(s)	14
BspPI	GGATC	1 cut(s)	127
BspTNI	GGTCTC	1 cut(s)	22
BssECI	CCNNGG	1 cut(s)	33
BssMI	GATC	1 cut(s)	119
BssT1I	CCWWGG	1 cut(s)	33
BstC8I	GCNNGC	1 cut(s)	7
BstDEI	CTNAG	2 cut(s)	19, 51
BstFNI	CGCG	1 cut(s)	14
BstH2I	RGCGCY	1 cut(s)	80
BstHHI	GCGC	2 cut(s)	48, 79
BstKTI	GATC	1 cut(s)	122
BstMAI	GTCTC	1 cut(s)	22
BstMBI	GATC	1 cut(s)	119
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstUI	CGCG	1 cut(s)	14
BsuRI	GGCC	1 cut(s)	32
BtsIMutI	CAGTG	1 cut(s)	129
Cac8I	GCNNGC	1 cut(s)	7
CfoI	GCGC	2 cut(s)	48, 79
CviAII	CATG	1 cut(s)	85
CviJI	RGCY	3 cut(s)	9, 32, 38
CviKI_1	RGCY	3 cut(s)	9, 32, 38
DdeI	CTNAG	2 cut(s)	19, 51
DpnI	GATC	1 cut(s)	121
DpnII	GATC	1 cut(s)	119
Eco130I	CCWWGG	1 cut(s)	33
Eco31I	GGTCTC	1 cut(s)	22
EcoT14I	CCWWGG	1 cut(s)	33
ErhI	CCWWGG	1 cut(s)	33
FaeI	CATG	1 cut(s)	88
FaiI	YATR	3 cut(s)	86, 144, 152
FalI	AAGNNNNNCTT	2 cut(s)	26, 58
FatI	CATG	1 cut(s)	84
GlaI	GCGC	2 cut(s)	47, 78
HaeII	RGCGCY	1 cut(s)	80
HaeIII	GGCC	1 cut(s)	32
HhaI	GCGC	2 cut(s)	48, 79
Hin1II	CATG	1 cut(s)	88
Hin6I	GCGC	2 cut(s)	46, 77
HinP1I	GCGC	2 cut(s)	46, 77
HincII	GTYRAC	1 cut(s)	25
HindII	GTYRAC	1 cut(s)	25
HinfI	GANTC	1 cut(s)	127
HphI	GGTGA	1 cut(s)	158
Hpy166II	GTNNAC	1 cut(s)	25
Hpy188I	TCNGA	2 cut(s)	60, 132
Hpy8I	GTNNAC	1 cut(s)	25
HpyCH4V	TGCA	1 cut(s)	116
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	2 cut(s)	19, 51
Hsp92II	CATG	1 cut(s)	88
HspAI	GCGC	2 cut(s)	46, 77
Kzo9I	GATC	1 cut(s)	119
LmnI	GCTCC	1 cut(s)	99
LpnPI	CCDG	1 cut(s)	102
LweI	GCATC	1 cut(s)	123
MalI	GATC	1 cut(s)	121
MboI	GATC	1 cut(s)	119
MluCI	AATT	1 cut(s)	159
MnlI	CCTC	1 cut(s)	58
MvnI	CGCG	1 cut(s)	14
MwoI	GCNNNNNNNGC	1 cut(s)	11
NdeII	GATC	1 cut(s)	119
NlaIII	CATG	1 cut(s)	88
PfeI	GAWTC	1 cut(s)	127
Sau3AI	GATC	1 cut(s)	119
SetI	ASST	1 cut(s)	11
SfaNI	GCATC	1 cut(s)	123
SgeI	CNNG	8 cut(s)	18, 25, 40, 46, 55, 97, 110, 129
Sse9I	AATT	1 cut(s)	159
SsiI	CCGC	2 cut(s)	14, 136
StyI	CCWWGG	1 cut(s)	33
TasI	AATT	1 cut(s)	159
TfiI	GAWTC	1 cut(s)	127
TscAI	CASTG	1 cut(s)	129
TspDTI	ATGAA	1 cut(s)	101
TspGWI	ACGGA	1 cut(s)	86
TspRI	CASTG	1 cut(s)	129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.