Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0014733

Physical Location & Seq

Genomic Coordinates Forward (+)

16564913 .. 16567291

Gene Structure 2379 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG180000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGGAGCCAATGAAGTCAAAGATCAACAAAATGTTTTCACCAGCAAGTAAAGGCTCTGCGGATGGCAGGGGAGTAACGGATTTGGCAGACTTGGAAATCAGGCCTTGTGGAATGTTGGTTCAAAAGCGCAATGGGGAGACGAATCCAACTTCTGTTTCGATTCCCATAATCAGAGTTAGAGTCAAGTATGGTTCTTCGTATCACGAAATTAGTATCAGCTCCCATGCTAGCTTTGGAGAGTTGAAGAAAATGTTGGCAGGACCAACTAAACTGCATCATGAAGATCAGAAACTGATATACAAAAACAAAGAGAGAGATTCCAAAGAGTATCTTGATGTGGCAAGAGTCAAAAATGGATCCAAAATTGTGTTGGTGGAAGACATTGTGAGTAGAGAAAAAAGGTGCCTAGAGTTACTCAGAAATGCAAATTCTCAGAAGTCTTCGAAAGCCTTGGCTGAAATCAACTTGGAAGTTGACAAGCTTGCAGGCCAGGTCACAACTTTGGAAGCAACAGCTTCAAATGGTGGGAAAGTAGTGGAGAAAGATGTGGACAATTTGACGGAGCTCTTGATGATGAGGTTGATTAAACTTGATGGAATTGTTGCAGATGGAGATTTAAAATTGCAGAGAAGAGTGCTGGTATTGTTCTTTAGTCTCTTTAAAATCTATATTTTTAGACATTATTGCTATTATATCATACATGAATTTTCGATCGATAAACTTGTAGGTGAGAAGAGTTCAGAAGTACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0006508 GO:0006511 GO:0006515 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010498 GO:0019538 GO:0019941 GO:0030163 GO:0033554 GO:0035966 GO:0035967 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051603 GO:0051716 GO:0051788 GO:0070887 GO:0071218 GO:0071310 GO:0071629 GO:0071704 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BAG ubiquitin

Protein Analysis

250

Amino Acids

28.16

Weight (kDa)

9.15

Isoelectric Point (pI)

25.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BAG	PF02179	152 - 214	4.4e-10	BAG domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014733)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g01500 FvH4_5g01500
malus_domestica	MD06G1072800.v1.1
prunus_persica	Prupe.5G091300_v2.0.a1
pyrus_communis	pycom04g06050 pycom06g07230
rosa_chinensis	RchiOBHm_Chr7g0199191
rosa_laevigata	RLG00000003807
rosa_multiflora	Rmu_sc0006266.1_g000068
rosa_roxburghii	Rroxscaffold_3G00256970
rosa_rugosa	Rorug07G0053200 Rorug07G0053300
rosa_samantha	Rh7AG177000 Rh7BG180500 Rh7CG186200 Rh7DG180000
rosa_wichuraiana	Rw7G015570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	402
AciI	CCGC	1 cut(s)	59
AclWI	GGATC	2 cut(s)	351, 364
AcsI	RAATTY	2 cut(s)	427, 704
AfaI	GTAC	1 cut(s)	747
AgsI	TTSAA	3 cut(s)	122, 244, 519
AjnI	CCWGG	1 cut(s)	489
AjuI	GAANNNNNNNTTGG	4 cut(s)	139, 171, 236, 268
AloI	GAACNNNNNNTCC	2 cut(s)	102, 134
AluBI	AGCT	5 cut(s)	219, 231, 481, 515, 565
AluI	AGCT	5 cut(s)	219, 231, 481, 515, 565
Alw21I	GWGCWC	1 cut(s)	567
Alw26I	GTCTC	2 cut(s)	131, 659
AlwI	GGATC	2 cut(s)	351, 364
AlwNI	CAGNNNCTG	1 cut(s)	292
AoxI	GGCC	2 cut(s)	101, 487
ApoI	RAATTY	2 cut(s)	427, 704
AspLEI	GCGC	1 cut(s)	129
AspS9I	GGNCC	1 cut(s)	260
AsuHPI	GGTGA	2 cut(s)	30, 740
AsuII	TTCGAA	1 cut(s)	443
AsuNHI	GCTAGC	1 cut(s)	227
AvaII	GGWCC	1 cut(s)	260
BamHI	GGATCC	1 cut(s)	356
BanI	GGYRCC	1 cut(s)	402
BanII	GRGCYC	1 cut(s)	567
BbsI	GAAGAC	2 cut(s)	384, 432
Bbv12I	GWGCWC	1 cut(s)	567
BccI	CCATC	3 cut(s)	56, 587, 602
BciT130I	CCWGG	1 cut(s)	491
BcoDI	GTCTC	2 cut(s)	131, 659
BfaI	CTAG	2 cut(s)	228, 407
Bme1390I	CCNGG	1 cut(s)	491
Bme18I	GGWCC	1 cut(s)	260
BmgT120I	GGNCC	1 cut(s)	260
BmiI	GGNNCC	3 cut(s)	6, 358, 404
BmrFI	CCNGG	1 cut(s)	491
BmsI	GCATC	1 cut(s)	283
BmtI	GCTAGC	1 cut(s)	231
BpiI	GAAGAC	2 cut(s)	384, 432
Bpu14I	TTCGAA	1 cut(s)	443
Bsa29I	ATCGAT	1 cut(s)	714
BsaJI	CCNNGG	1 cut(s)	450
Bse3DI	GCAATG	1 cut(s)	136
BseBI	CCWGG	1 cut(s)	491
BseCI	ATCGAT	1 cut(s)	714
BseDI	CCNNGG	1 cut(s)	450
BseGI	GGATG	1 cut(s)	67
BseMI	GCAATG	1 cut(s)	136
BseMII	CTCAG	2 cut(s)	430, 446
Bsh1285I	CGRYCG	1 cut(s)	714
BshFI	GGCC	2 cut(s)	103, 489
BshNI	GGYRCC	1 cut(s)	402
BshVI	ATCGAT	1 cut(s)	714
BsiEI	CGRYCG	1 cut(s)	714
BsiHKAI	GWGCWC	1 cut(s)	567
BsmAI	GTCTC	2 cut(s)	131, 659
BsmBI	CGTCTC	1 cut(s)	131
BsnI	GGCC	2 cut(s)	103, 489
Bsp119I	TTCGAA	1 cut(s)	443
Bsp1286I	GDGCHC	1 cut(s)	567
Bsp143I	GATC	4 cut(s)	21, 283, 356, 711
BspACI	CCGC	1 cut(s)	59
BspANI	GGCC	2 cut(s)	103, 489
BspCNI	CTCAG	2 cut(s)	429, 445
BspDI	ATCGAT	1 cut(s)	714
BspHI	TCATGA	1 cut(s)	277
BspLI	GGNNCC	3 cut(s)	6, 358, 404
BspOI	GCTAGC	1 cut(s)	231
BspPI	GGATC	2 cut(s)	351, 364
BspT104I	TTCGAA	1 cut(s)	443
BspT107I	GGYRCC	1 cut(s)	402
BsrDI	GCAATG	1 cut(s)	136
BssECI	CCNNGG	1 cut(s)	450
BssMI	GATC	4 cut(s)	21, 283, 356, 711
BssT1I	CCWWGG	1 cut(s)	450
Bst2UI	CCWGG	1 cut(s)	491
Bst6I	CTCTTC	2 cut(s)	625, 728
BstBI	TTCGAA	1 cut(s)	443
BstC8I	GCNNGC	3 cut(s)	229, 483, 487
BstDEI	CTNAG	2 cut(s)	416, 432
BstF5I	GGATG	1 cut(s)	67
BstHHI	GCGC	1 cut(s)	129
BstKTI	GATC	4 cut(s)	24, 286, 359, 714
BstMAI	GTCTC	2 cut(s)	131, 659
BstMBI	GATC	4 cut(s)	21, 283, 356, 711
BstMCI	CGRYCG	1 cut(s)	714
BstNI	CCWGG	1 cut(s)	491
BstSCI	CCNGG	1 cut(s)	489
BstV2I	GAAGAC	2 cut(s)	384, 432
BstX2I	RGATCY	1 cut(s)	356
BstYI	RGATCY	1 cut(s)	356
Bsu15I	ATCGAT	1 cut(s)	714
BsuRI	GGCC	2 cut(s)	103, 489
BsuTUI	ATCGAT	1 cut(s)	714
BtsCI	GGATG	1 cut(s)	67
Cac8I	GCNNGC	3 cut(s)	229, 483, 487
CaiI	CAGNNNCTG	1 cut(s)	292
CciI	TCATGA	1 cut(s)	277
CfoI	GCGC	1 cut(s)	129
Cfr13I	GGNCC	1 cut(s)	260
ClaI	ATCGAT	1 cut(s)	714
Csp6I	GTAC	1 cut(s)	746
CviAII	CATG	3 cut(s)	224, 278, 701
CviQI	GTAC	1 cut(s)	746
DdeI	CTNAG	2 cut(s)	416, 432
DpnI	GATC	4 cut(s)	23, 285, 358, 713
DpnII	GATC	4 cut(s)	21, 283, 356, 711
DraI	TTTAAA	2 cut(s)	618, 661
Eam1104I	CTCTTC	2 cut(s)	625, 728
EarI	CTCTTC	2 cut(s)	625, 728
Ecl136II	GAGCTC	1 cut(s)	565
Eco130I	CCWWGG	1 cut(s)	450
Eco147I	AGGCCT	1 cut(s)	103
Eco24I	GRGCYC	1 cut(s)	567
Eco47I	GGWCC	1 cut(s)	260
Eco53kI	GAGCTC	1 cut(s)	565
EcoICRI	GAGCTC	1 cut(s)	565
EcoRII	CCWGG	1 cut(s)	489
EcoT14I	CCWWGG	1 cut(s)	450
EcoT38I	GRGCYC	1 cut(s)	567
ErhI	CCWWGG	1 cut(s)	450
Esp3I	CGTCTC	1 cut(s)	131
FaeI	CATG	3 cut(s)	227, 281, 704
FaiI	YATR	9 cut(s)	167, 189, 225, 279, 298, 669, 693, 698, 702
FalI	AAGNNNNNCTT	2 cut(s)	315, 347
FatI	CATG	3 cut(s)	223, 277, 700
FokI	GGATG	1 cut(s)	74
FriOI	GRGCYC	1 cut(s)	567
FspBI	CTAG	2 cut(s)	228, 407
GlaI	GCGC	1 cut(s)	128
HaeIII	GGCC	2 cut(s)	103, 489
HhaI	GCGC	1 cut(s)	129
Hin1II	CATG	3 cut(s)	227, 281, 704
Hin6I	GCGC	1 cut(s)	127
HinP1I	GCGC	1 cut(s)	127
HincII	GTYRAC	1 cut(s)	475
HindII	GTYRAC	1 cut(s)	475
HindIII	AAGCTT	1 cut(s)	479
HinfI	GANTC	5 cut(s)	142, 160, 180, 317, 345
HphI	GGTGA	2 cut(s)	30, 740
Hpy166II	GTNNAC	2 cut(s)	475, 550
Hpy188I	TCNGA	5 cut(s)	173, 288, 419, 435, 742
Hpy188III	TCNNGA	4 cut(s)	203, 278, 332, 568
Hpy8I	GTNNAC	2 cut(s)	475, 550
HpyCH4V	TGCA	5 cut(s)	274, 425, 485, 605, 625
HpyF3I	CTNAG	2 cut(s)	416, 432
Hsp92II	CATG	3 cut(s)	227, 281, 704
HspAI	GCGC	1 cut(s)	127
Kzo9I	GATC	4 cut(s)	21, 283, 356, 711
LmnI	GCTCC	3 cut(s)	4, 224, 562
LpnPI	CCDG	8 cut(s)	52, 54, 85, 243, 471, 476, 503, 623
LweI	GCATC	1 cut(s)	283
MaeI	CTAG	2 cut(s)	228, 407
MaeIII	GTNAC	3 cut(s)	73, 411, 493
MalI	GATC	4 cut(s)	23, 285, 358, 713
MboI	GATC	4 cut(s)	21, 283, 356, 711
MboII	GAAGA	7 cut(s)	186, 256, 293, 389, 432, 642, 745
MflI	RGATCY	1 cut(s)	356
MhlI	GDGCHC	1 cut(s)	567
MluCI	AATT	7 cut(s)	207, 363, 427, 553, 597, 620, 704
MlyI	GAGTC	2 cut(s)	189, 354
MmeI	TCCRAC	1 cut(s)	170
MnlI	CCTC	1 cut(s)	570
MseI	TTAA	3 cut(s)	585, 617, 660
MspR9I	CCNGG	1 cut(s)	491
MvaI	CCWGG	1 cut(s)	491
NdeII	GATC	4 cut(s)	21, 283, 356, 711
NheI	GCTAGC	1 cut(s)	227
NlaIII	CATG	3 cut(s)	227, 281, 704
NlaIV	GGNNCC	3 cut(s)	6, 358, 404
NmuCI	GTSAC	1 cut(s)	493
NspV	TTCGAA	1 cut(s)	443
PagI	TCATGA	1 cut(s)	277
PceI	AGGCCT	1 cut(s)	103
PfeI	GAWTC	3 cut(s)	142, 160, 317
Ple19I	CGATCG	1 cut(s)	714
PleI	GAGTC	2 cut(s)	188, 353
PpsI	GAGTC	2 cut(s)	188, 353
Psp124BI	GAGCTC	1 cut(s)	567
Psp6I	CCWGG	1 cut(s)	489
PspGI	CCWGG	1 cut(s)	489
PspN4I	GGNNCC	3 cut(s)	6, 358, 404
PspPI	GGNCC	1 cut(s)	260
PstNI	CAGNNNCTG	1 cut(s)	292
PsuI	RGATCY	1 cut(s)	356
PvuI	CGATCG	1 cut(s)	714
RsaI	GTAC	1 cut(s)	747
RsaNI	GTAC	1 cut(s)	746
SacI	GAGCTC	1 cut(s)	567
SaqAI	TTAA	3 cut(s)	585, 617, 660
Sau3AI	GATC	4 cut(s)	21, 283, 356, 711
Sau96I	GGNCC	1 cut(s)	260
SchI	GAGTC	2 cut(s)	189, 354
ScrFI	CCNGG	1 cut(s)	491
SduI	GDGCHC	1 cut(s)	567
SetI	ASST	9 cut(s)	221, 233, 404, 483, 495, 517, 567, 581, 730
SfaNI	GCATC	1 cut(s)	283
SfuI	TTCGAA	1 cut(s)	443
SinI	GGWCC	1 cut(s)	260
Sse9I	AATT	7 cut(s)	207, 363, 427, 553, 597, 620, 704
SseBI	AGGCCT	1 cut(s)	103
SsiI	CCGC	1 cut(s)	59
SspMI	CTAG	2 cut(s)	228, 407
SstI	GAGCTC	1 cut(s)	567
StuI	AGGCCT	1 cut(s)	103
StyD4I	CCNGG	1 cut(s)	489
StyI	CCWWGG	1 cut(s)	450
TaqI	TCGA	4 cut(s)	158, 443, 710, 714
TasI	AATT	7 cut(s)	207, 363, 427, 553, 597, 620, 704
TatI	WGTACW	1 cut(s)	745
TfiI	GAWTC	3 cut(s)	142, 160, 317
Tru1I	TTAA	3 cut(s)	585, 617, 660
Tru9I	TTAA	3 cut(s)	585, 617, 660
TseFI	GTSAC	1 cut(s)	493
Tsp45I	GTSAC	1 cut(s)	493
TspDTI	ATGAA	3 cut(s)	26, 294, 717
TspGWI	ACGGA	2 cut(s)	92, 575
VpaK11BI	GGWCC	1 cut(s)	260
XapI	RAATTY	2 cut(s)	427, 704
XcmI	CCANNNNNNNNNTGG	2 cut(s)	230, 367
XspI	CTAG	2 cut(s)	228, 407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.