MD07G1229500.v1.1

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0017394
Physical Location & Seq
Forward (+)
30441092 .. 30444477
3386 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1229500.v1.1.491

Sequence Viewer

Length: 2322 bp
ATGGGTCTAGCTGTTAAATTGGGCTTTCCTCAACCTGCTTATCCTCTGGTTCTTCCCGCCTCAACTTCCAAAGACAAAAGTAAAAATTCAACATTAATTCAATCATCTCCAACAACCCAGAAACCCAATGGAAGCAAATTTCCGAGCTTAGTTTTTGTTGATGAAACTCGGAAAAGGTTTCAAATTCAACCCTTAATTGATATCCTTTATGGTTGTGAGGACATGGGTTCTGTAGGAAAAGTTAAATCTGTTCATGGGTTGGTATTAAAATCCGAGCTTTCGGACAGGGACTTGCTGGTGGTGTTGAACCATGTTGCCAATGCCTATTCGAAATGCTTGGATTTTGACACAGCTCGTCGAGTGTTTGATGAAATGCCGCTGAGGAACATATTCTCTTGGACAGTCATGATTGTTGGGTCGACAGAGAGTGGGTTGTTTCTTGATGGGTTTAAGTTCTTTTGTGATATGGTGGTTAGTGGAATTTTACCAGACAAGTTTGCGTATTCAGCGGTTGTGCAGACATGCATTGGGTTAGATTGTATCGAATTGGGCGAAATGGTGCATGCCCAGGTTGTTGTAAGAGGCTTTGCGTCTGATACTTTTGTAAGTACAACTCTTCTTAACATGTATGCAAAGTTCGGAATGGTTGAGAATTCGTGTAGGATGTTTAATACCATGACTGAACATAATAAAGTCTCCTGGAATGCAATGATTTCAGGGTTAACATCAAATGGCCTTCATTCTGAAGCATTTGATCAATTTGTAAGAATGCAGAAAGAAGGAATTAAACCAAATTTGTATACACTCATCAGTGTCTCGAAAGCAGTCGGGAAGTTAGGTAATGTTGACAAGAGCAAAATTGTTCACAGTTATGCATCTGGATTGAGCATGGAGCCTAGTGTTCTTGTGGGAACTGCTCTTATCGATATGTACTCTAAATGCAAGTCTGTGTCTGATGCAAGATCTGTTTTTGACTTGAATTTCACCAGTTGTAAAACCAATCCACCATGGAATGCAATGATATCTGGTTATTCACAGTCAGGTCACAGCCAAGAAGCATTGGAGCTCTTTGTGAGAATGTGCGTAAACAATATACAACCAGACAAATACACTTACTGCAGTGTCTTCAATGCAATAGCTGCTTTGAAATGTTTGCGTTTGGGAAAGGAAATTCATGGGATGGTTTTGAAGTCTGGGGTGGAAATGAAGGTTACAAGCATCTCCAATGCAATTGCCAATGCATATGCCAAATGTGGGTTGCTCAAAGACGTACAGAAGGTCTTTGACAGGATAGAAGAGAGAGATTTAGTGTCTTGGACAACACTGGTGACTGCTTGTTCACAATGTTTTGAATGGGAGGATGCACTGATAGTCTTCTCAAAGTTGAGAGAAGAAGGCTTTACACCGAACGAGTTTACCATTTCTAGTGTGCTTGTTGCATGTGCCAGCCTTTGTTTCCTGGAGTATGGTCAGCAAGTCCATGGCCTCCTTTGCAAGGCTGGCTTGGACTCGGAAAAGTGTATAGAAAGTGCTCTAATTGATATGTATGCCAAGTGCGGTAATATAGACGAGGCGCAAGAGGTCTTTGAGAGGATTTCTGAACCAGATACAGTGTCGTGGACTGCTATTATATCAGGCTATGCTCAACATGGGCTTGTGGAGGATGCTCTTGAACTCTTTAAGAGAATGGAGCAGATGGGTGTGAAGGCCAATGATGTGACGCTATTGTGTGTTCTGTTTGCATGCAGCCACCGTGGTATGGTAGATGAAGGCCACTATCTTTTTCATCAAATGGAAAAATCATATGGGGTGGTGCCAAAGATGGAACATTATGCTTGTATTGTTGATCTCTTAGGTCGTGTAGGCCGTCTTAATGATGCAATGGAGTTCATAGAAAGAATGCCAATTGAGCCCGACGAAATGGTTTGGCAGACTTTGTTGGGAGCATGTAGGGTACATGAAAATGTTGAGTTGGGGGAGATTGCAGCTGAGAAGATTCTTTCGGTTACACCAGAATCCTCAGCTACCTATGTTCTTCTGTACAACACCTATATCAGGACAGGGAGTTATGAAGATGGACTTAGTCTGAGAGATGTGATGAAAGACCGAGGCGTGAAAAAGGAACCAGGTTGTAGTTGGATTTCTGTGAATGGTAGAATCCACAAATTTTATGCAGGGGATCAACGACATCCAGAAAAGCATGATATTTATGCAAATTTAGAAGAGCTGAGAGCGAAGCTTAAATCCATGGGTTACATTCCAGATTTGCGTAATGTATTGCAAGATGTGAATTTGGTAGAAAAAAGGGGGATGCATGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2

Protein Analysis

774

Amino Acids

86.09

Weight (kDa)

5.88

Isoelectric Point (pI)

36.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 128 - 175 7.4e-06 PPR repeat family
PPR_2 PF13041 230 - 269 2.9e-09 PPR repeat family
PPR PF01535 232 - 262 8.3e-07 PPR repeat
PPR_2 PF13041 337 - 379 1.4e-11 PPR repeat family
PPR PF01535 337 - 364 6.5e-07 PPR repeat
PPR_2 PF13041 435 - 482 2.8e-07 PPR repeat family
PPR_1 PF12854 534 - 564 3.3e-08 PPR repeat
PPR_2 PF13041 535 - 582 2.1e-11 PPR repeat family
PPR PF01535 538 - 568 7e-10 PPR repeat
PPR_long PF17177 553 - 650 5.1e-06 Pentacotripeptide-repeat region of PRORP
E_motif PF20431 653 - 714 4.8e-15 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017394)

Species Orthologous Gene IDs
malus_domestica MD07G1229500.v1.1
prunus_persica Prupe.2G259700_v2.0.a1
pyrus_communis pycom07g20760
rosa_laevigata RLG00000026956
rosa_multiflora Rmu_sc0000809.1_g000018
rosa_roxburghii Rroxscaffold_4G00285630
rosa_rugosa Rorug01G0364300 Rorug01G0364400
rosa_samantha Rh1AG374700 Rh1BG338100 Rh1CG351400 Rh1DG369100
rosa_wichuraiana Rw1G032960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 43
AccB1I GGYRCC 1 cut(s) 1813
AccI GTMKAC 2 cut(s) 419, 800
AciI CCGC 4 cut(s) 57, 377, 509, 1557
AclWI GGATC 1 cut(s) 2187
AcuI CTGAAG 1 cut(s) 765
AfaI GTAC 5 cut(s) 610, 932, 1272, 1956, 2042
AfiI CCNNNNNNNGG 4 cut(s) 1254, 1495, 1759, 2055
AflIII ACRYGT 1 cut(s) 624
AjnI CCWGG 4 cut(s) 567, 698, 1458, 2125
Alw21I GWGCWC 2 cut(s) 1068, 1534
Alw26I GTCTC 2 cut(s) 700, 820
AlwI GGATC 1 cut(s) 2187
AoxI GGCC 5 cut(s) 733, 1483, 1707, 1771, 1864
ApeKI GCWGC 3 cut(s) 1139, 1746, 1985
AseI ATTAAT 1 cut(s) 95
Asp700I GAANNNNTTC 1 cut(s) 389
AspLEI GCGC 1 cut(s) 1576
AsuHPI GGTGA 2 cut(s) 976, 1339
AsuII TTCGAA 1 cut(s) 329
BaeI ACNNNNGTAYC 2 cut(s) 588, 621
BanI GGYRCC 1 cut(s) 1813
BanII GRGCYC 2 cut(s) 1068, 1914
BbsI GAAGAC 2 cut(s) 1117, 1366
Bbv12I GWGCWC 2 cut(s) 1068, 1534
BbvCI CCTCAGC 2 cut(s) 380, 2020
BbvI GCAGC 3 cut(s) 1126, 1758, 1997
BccI CCATC 5 cut(s) 437, 1174, 1690, 1816, 2069
BceAI ACGGC 1 cut(s) 1851
BciT130I CCWGG 4 cut(s) 569, 700, 1460, 2127
BclI TGATCA 1 cut(s) 754
BcoDI GTCTC 2 cut(s) 700, 820
BfaI CTAG 3 cut(s) 8, 897, 1425
BfmI CTRYAG 2 cut(s) 231, 1117
BfuAI ACCTGC 1 cut(s) 43
BglII AGATCT 1 cut(s) 962
BisI GCNGC 4 cut(s) 377, 1140, 1747, 1986
BlsI GCNGC 4 cut(s) 378, 1141, 1748, 1987
Bme1390I CCNGG 4 cut(s) 569, 700, 1460, 2127
BmiI GGNNCC 3 cut(s) 894, 1815, 2124
BmrFI CCNGG 4 cut(s) 569, 700, 1460, 2127
BmsI GCATC 7 cut(s) 884, 946, 1227, 1351, 1654, 1867, 2301
BpiI GAAGAC 2 cut(s) 1117, 1366
BpmI CTGGAG 1 cut(s) 1481
Bpu10I CCTNAGC 2 cut(s) 380, 2020
Bpu14I TTCGAA 1 cut(s) 329
Bsa29I ATCGAT 1 cut(s) 924
BsaJI CCNNGG 6 cut(s) 567, 1007, 1480, 1753, 2107, 2247
Bsc4I CCNNNNNNNGG 4 cut(s) 1254, 1495, 1759, 2055
Bse1I ACTGG 2 cut(s) 987, 1329
Bse3DI GCAATG 3 cut(s) 714, 1023, 1887
BseBI CCWGG 4 cut(s) 569, 700, 1460, 2127
BseCI ATCGAT 1 cut(s) 924
BseDI CCNNGG 6 cut(s) 567, 1007, 1480, 1753, 2107, 2247
BseGI GGATG 6 cut(s) 669, 1185, 1366, 1669, 2188, 2316
BseLI CCNNNNNNNGG 4 cut(s) 1254, 1495, 1759, 2055
BseMI GCAATG 3 cut(s) 714, 1023, 1887
BseMII CTCAG 5 cut(s) 371, 1980, 2034, 2078, 2219
BseNI ACTGG 2 cut(s) 987, 1329
BseXI GCAGC 3 cut(s) 1126, 1758, 1997
BsgI GTGCAG 1 cut(s) 536
BshFI GGCC 5 cut(s) 735, 1485, 1709, 1773, 1866
BshNI GGYRCC 1 cut(s) 1813
BshVI ATCGAT 1 cut(s) 924
BsiHKAI GWGCWC 2 cut(s) 1068, 1534
BslFI GGGAC 1 cut(s) 302
BslI CCNNNNNNNGG 4 cut(s) 1254, 1495, 1759, 2055
BsmAI GTCTC 2 cut(s) 700, 820
BsmFI GGGAC 1 cut(s) 302
BsmI GAATGC 4 cut(s) 709, 774, 1018, 1905
BsnI GGCC 5 cut(s) 735, 1485, 1709, 1773, 1866
Bsp119I TTCGAA 1 cut(s) 329
Bsp1286I GDGCHC 3 cut(s) 1068, 1534, 1914
Bsp1407I TGTACA 1 cut(s) 2040
Bsp143I GATC 4 cut(s) 754, 962, 1846, 2179
Bsp19I CCATGG 3 cut(s) 1007, 1480, 2247
BspACI CCGC 4 cut(s) 57, 377, 509, 1557
BspANI GGCC 5 cut(s) 735, 1485, 1709, 1773, 1866
BspCNI CTCAG 5 cut(s) 372, 1981, 2033, 2079, 2220
BspDI ATCGAT 1 cut(s) 924
BspHI TCATGA 1 cut(s) 405
BspLI GGNNCC 3 cut(s) 894, 1815, 2124
BspMAI CTGCAG 1 cut(s) 1121
BspMI ACCTGC 1 cut(s) 43
BspPI GGATC 1 cut(s) 2187
BspQI GCTCTTC 1 cut(s) 2217
BspT104I TTCGAA 1 cut(s) 329
BspT107I GGYRCC 1 cut(s) 1813
BsrDI GCAATG 3 cut(s) 714, 1023, 1887
BsrGI TGTACA 1 cut(s) 2040
BsrI ACTGG 2 cut(s) 987, 1329
BssECI CCNNGG 6 cut(s) 567, 1007, 1480, 1753, 2107, 2247
BssMI GATC 4 cut(s) 754, 962, 1846, 2179
BssNAI GTATAC 1 cut(s) 801
BssT1I CCWWGG 3 cut(s) 1007, 1480, 2247
Bst1107I GTATAC 1 cut(s) 801
Bst2UI CCWGG 4 cut(s) 569, 700, 1460, 2127
Bst4CI ACNGT 5 cut(s) 403, 869, 1038, 1612, 1754
Bst6I CTCTTC 3 cut(s) 621, 1290, 2217
BstAPI GCANNNNNTGC 1 cut(s) 1139
BstAUI TGTACA 1 cut(s) 2040
BstBI TTCGAA 1 cut(s) 329
BstC8I GCNNGC 4 cut(s) 564, 1447, 1501, 1744
BstDEI CTNAG 8 cut(s) 148, 380, 1852, 1989, 2020, 2081, 2087, 2228
BstDSI CCRYGG 4 cut(s) 1007, 1480, 1753, 2247
BstENI CCTNNNNNAGG 2 cut(s) 1493, 2053
BstF5I GGATG 6 cut(s) 669, 1185, 1366, 1669, 2188, 2316
BstHHI GCGC 1 cut(s) 1576
BstKTI GATC 4 cut(s) 757, 965, 1849, 2182
BstMAI GTCTC 2 cut(s) 700, 820
BstMBI GATC 4 cut(s) 754, 962, 1846, 2179
BstMWI GCNNNNNNNGC 5 cut(s) 506, 1139, 1491, 1500, 1909
BstNI CCWGG 4 cut(s) 569, 700, 1460, 2127
BstNSI RCATGY 6 cut(s) 525, 566, 628, 1443, 1746, 1950
BstSCI CCNGG 4 cut(s) 567, 698, 1458, 2125
BstSFI CTRYAG 2 cut(s) 231, 1117
BstV1I GCAGC 3 cut(s) 1126, 1758, 1997
BstV2I GAAGAC 2 cut(s) 1117, 1366
BstX2I RGATCY 1 cut(s) 962
BstYI RGATCY 1 cut(s) 962
BstZ17I GTATAC 1 cut(s) 801
Bsu15I ATCGAT 1 cut(s) 924
BsuRI GGCC 5 cut(s) 735, 1485, 1709, 1773, 1866
BsuTUI ATCGAT 1 cut(s) 924
BtgI CCRYGG 4 cut(s) 1007, 1480, 1753, 2247
BtsCI GGATG 6 cut(s) 669, 1185, 1366, 1669, 2188, 2316
BtsI GCAGTG 1 cut(s) 1126
BtsIMutI CAGTG 5 cut(s) 817, 1126, 1322, 1364, 1617
BveI ACCTGC 1 cut(s) 43
Cac8I GCNNGC 4 cut(s) 564, 1447, 1501, 1744
CciI TCATGA 1 cut(s) 405
CfoI GCGC 1 cut(s) 1576
ClaI ATCGAT 1 cut(s) 924
CseI GACGC 2 cut(s) 579, 1729
CsiI ACCWGGT 1 cut(s) 2125
Csp6I GTAC 5 cut(s) 609, 931, 1271, 1955, 2041
CviQI GTAC 5 cut(s) 609, 931, 1271, 1955, 2041
DdeI CTNAG 8 cut(s) 148, 380, 1852, 1989, 2020, 2081, 2087, 2228
DpnI GATC 4 cut(s) 756, 964, 1848, 2181
DpnII GATC 4 cut(s) 754, 962, 1846, 2179
Eam1104I CTCTTC 3 cut(s) 621, 1290, 2217
EarI CTCTTC 3 cut(s) 621, 1290, 2217
Ecl136II GAGCTC 1 cut(s) 1066
Eco130I CCWWGG 3 cut(s) 1007, 1480, 2247
Eco24I GRGCYC 2 cut(s) 1068, 1914
Eco32I GATATC 2 cut(s) 202, 1023
Eco53kI GAGCTC 1 cut(s) 1066
Eco57I CTGAAG 1 cut(s) 765
EcoICRI GAGCTC 1 cut(s) 1066
EcoNI CCTNNNNNAGG 2 cut(s) 1493, 2053
EcoRI GAATTC 1 cut(s) 652
EcoRII CCWGG 4 cut(s) 567, 698, 1458, 2125
EcoRV GATATC 2 cut(s) 202, 1023
EcoT14I CCWWGG 3 cut(s) 1007, 1480, 2247
EcoT22I ATGCAT 4 cut(s) 527, 877, 1243, 2316
EcoT38I GRGCYC 2 cut(s) 1068, 1914
ErhI CCWWGG 3 cut(s) 1007, 1480, 2247
FalI AAGNNNNNCTT 4 cut(s) 1487, 1519, 2064, 2096
FaqI GGGAC 1 cut(s) 302
FauI CCCGC 1 cut(s) 64
FauNDI CATATG 2 cut(s) 1243, 1804
FbaI TGATCA 1 cut(s) 754
FblI GTMKAC 2 cut(s) 419, 800
Fnu4HI GCNGC 4 cut(s) 377, 1140, 1747, 1986
FokI GGATG 5 cut(s) 676, 1192, 1373, 1676, 2175
FriOI GRGCYC 2 cut(s) 1068, 1914
Fsp4HI GCNGC 4 cut(s) 377, 1140, 1747, 1986
FspBI CTAG 3 cut(s) 8, 897, 1425
GlaI GCGC 1 cut(s) 1575
GluI GCNGC 4 cut(s) 377, 1140, 1747, 1986
GsuI CTGGAG 1 cut(s) 1481
HaeIII GGCC 5 cut(s) 735, 1485, 1709, 1773, 1866
HgaI GACGC 2 cut(s) 579, 1729
HhaI GCGC 1 cut(s) 1576
Hin6I GCGC 1 cut(s) 1574
HinP1I GCGC 1 cut(s) 1574
HincII GTYRAC 3 cut(s) 420, 723, 847
HindII GTYRAC 3 cut(s) 420, 723, 847
HindIII AAGCTT 1 cut(s) 2237
HinfI GANTC 4 cut(s) 1508, 1996, 2015, 2157
HpaI GTTAAC 1 cut(s) 723
HphI GGTGA 2 cut(s) 976, 1339
Hpy166II GTNNAC 9 cut(s) 420, 723, 801, 847, 865, 1087, 1340, 1416, 1620
Hpy188III TCNNGA 9 cut(s) 406, 440, 817, 829, 879, 1670, 2056, 2192, 2261
Hpy8I GTNNAC 9 cut(s) 420, 723, 801, 847, 865, 1087, 1340, 1416, 1620
Hpy99I CGWCG 2 cut(s) 360, 1919
HpyAV CCTTC 7 cut(s) 746, 773, 1201, 1270, 1388, 1699, 1763
HpyCH4III ACNGT 5 cut(s) 403, 869, 1038, 1612, 1754
HpyCH4IV ACGT 1 cut(s) 1269
HpyF10VI GCNNNNNNNGC 5 cut(s) 506, 1139, 1491, 1500, 1909
HpyF3I CTNAG 8 cut(s) 148, 380, 1852, 1989, 2020, 2081, 2087, 2228
HpySE526I ACGT 1 cut(s) 1269
HspAI GCGC 1 cut(s) 1574
Ksp22I TGATCA 1 cut(s) 754
KspAI GTTAAC 1 cut(s) 723
Kzo9I GATC 4 cut(s) 754, 962, 1846, 2179
LguI GCTCTTC 1 cut(s) 2217
LmnI GCTCC 4 cut(s) 892, 1063, 1690, 1943
Lsp1109I GCAGC 3 cut(s) 1126, 1758, 1997
LweI GCATC 7 cut(s) 884, 946, 1227, 1351, 1654, 1867, 2301
MabI ACCWGGT 1 cut(s) 2125
MaeI CTAG 3 cut(s) 8, 897, 1425
MaeII ACGT 1 cut(s) 1269
MaeIII GTNAC 6 cut(s) 1043, 1210, 1327, 1717, 2005, 2252
MalI GATC 4 cut(s) 756, 964, 1848, 2181
MboI GATC 4 cut(s) 754, 962, 1846, 2179
MfeI CAATTG 2 cut(s) 1230, 1905
MflI RGATCY 1 cut(s) 962
MhlI GDGCHC 3 cut(s) 1068, 1534, 1914
MlyI GAGTC 1 cut(s) 1502
MmeI TCCRAC 2 cut(s) 134, 2117
Mph1103I ATGCAT 4 cut(s) 527, 877, 1243, 2316
MroXI GAANNNNTTC 1 cut(s) 389
MslI CAYNNNNRTG 2 cut(s) 870, 1962
MspA1I CMGCKG 3 cut(s) 379, 509, 1988
MspR9I CCNGG 4 cut(s) 569, 700, 1460, 2127
MunI CAATTG 2 cut(s) 1230, 1905
Mva1269I GAATGC 4 cut(s) 709, 774, 1018, 1905
MvaI CCWGG 4 cut(s) 569, 700, 1460, 2127
MwoI GCNNNNNNNGC 5 cut(s) 506, 1139, 1491, 1500, 1909
NcoI CCATGG 3 cut(s) 1007, 1480, 2247
NdeI CATATG 2 cut(s) 1243, 1804
NdeII GATC 4 cut(s) 754, 962, 1846, 2179
NlaIV GGNNCC 3 cut(s) 894, 1815, 2124
NmuCI GTSAC 3 cut(s) 1043, 1327, 1717
NsiI ATGCAT 4 cut(s) 527, 877, 1243, 2316
NspI RCATGY 6 cut(s) 525, 566, 628, 1443, 1746, 1950
NspV TTCGAA 1 cut(s) 329
PaeI GCATGC 2 cut(s) 566, 1746
PagI TCATGA 1 cut(s) 405
PciI ACATGT 1 cut(s) 624
PciSI GCTCTTC 1 cut(s) 2217
PcsI WCGNNNNNNNCGW 2 cut(s) 549, 1864
PctI GAATGC 4 cut(s) 709, 774, 1018, 1905
PdmI GAANNNNTTC 1 cut(s) 389
PfeI GAWTC 3 cut(s) 1996, 2015, 2157
PflFI GACNNNGTC 1 cut(s) 2082
PfoI TCCNGGA 2 cut(s) 698, 1458
PkrI GCNGC 4 cut(s) 378, 1141, 1748, 1987
PleI GAGTC 1 cut(s) 1502
PpsI GAGTC 1 cut(s) 1502
PscI ACATGT 1 cut(s) 624
PshBI ATTAAT 1 cut(s) 95
Psp124BI GAGCTC 1 cut(s) 1068
Psp6I CCWGG 4 cut(s) 567, 698, 1458, 2125
PspGI CCWGG 4 cut(s) 567, 698, 1458, 2125
PspN4I GGNNCC 3 cut(s) 894, 1815, 2124
PsrI GAACNNNNNNTAC 2 cut(s) 620, 652
PstI CTGCAG 1 cut(s) 1121
PsuI RGATCY 1 cut(s) 962
PsyI GACNNNGTC 1 cut(s) 2082
PvuII CAGCTG 1 cut(s) 1988
RsaI GTAC 5 cut(s) 610, 932, 1272, 1956, 2042
RsaNI GTAC 5 cut(s) 609, 931, 1271, 1955, 2041
RseI CAYNNNNRTG 2 cut(s) 870, 1962
SacI GAGCTC 1 cut(s) 1068
SalI GTCGAC 1 cut(s) 418
SapI GCTCTTC 1 cut(s) 2217
SatI GCNGC 4 cut(s) 377, 1140, 1747, 1986
Sau3AI GATC 4 cut(s) 754, 962, 1846, 2179
SchI GAGTC 1 cut(s) 1502
ScrFI CCNGG 4 cut(s) 569, 700, 1460, 2127
SduI GDGCHC 3 cut(s) 1068, 1534, 1914
SexAI ACCWGGT 1 cut(s) 2125
SfaNI GCATC 7 cut(s) 884, 946, 1227, 1351, 1654, 1867, 2301
SfcI CTRYAG 2 cut(s) 231, 1117
SfuI TTCGAA 1 cut(s) 329
SmiMI CAYNNNNRTG 2 cut(s) 870, 1962
SphI GCATGC 2 cut(s) 566, 1746
SsiI CCGC 4 cut(s) 57, 377, 509, 1557
SspMI CTAG 3 cut(s) 8, 897, 1425
SstI GAGCTC 1 cut(s) 1068
StyD4I CCNGG 4 cut(s) 567, 698, 1458, 2125
StyI CCWWGG 3 cut(s) 1007, 1480, 2247
TaaI ACNGT 5 cut(s) 403, 869, 1038, 1612, 1754
TaiI ACGT 1 cut(s) 1272
TaqI TCGA 6 cut(s) 329, 358, 419, 543, 818, 924
TaqII GACCGA 1 cut(s) 2121
TatI WGTACW 3 cut(s) 608, 930, 2040
TauI GCSGC 1 cut(s) 379
TfiI GAWTC 3 cut(s) 1996, 2015, 2157
TscAI CASTG 5 cut(s) 817, 1126, 1329, 1371, 1617
TseFI GTSAC 3 cut(s) 1043, 1327, 1717
TseI GCWGC 3 cut(s) 1139, 1746, 1985
Tsp45I GTSAC 3 cut(s) 1043, 1327, 1717
TspRI CASTG 5 cut(s) 817, 1126, 1329, 1371, 1617
Tth111I GACNNNGTC 1 cut(s) 2082
VspI ATTAAT 1 cut(s) 95
XagI CCTNNNNNAGG 2 cut(s) 1493, 2053
XceI RCATGY 6 cut(s) 525, 566, 628, 1443, 1746, 1950
XcmI CCANNNNNNNNNTGG 2 cut(s) 125, 2133
XmiI GTMKAC 2 cut(s) 419, 800
XmnI GAANNNNTTC 1 cut(s) 389
XspI CTAG 3 cut(s) 8, 897, 1425
Zsp2I ATGCAT 4 cut(s) 527, 877, 1243, 2316
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.