Rh1DG369100

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0017394
Physical Location & Seq
Forward (+)
59405148 .. 59408891
3744 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG369100.1

Sequence Viewer

Length: 2367 bp
ATGCGCCATCACTACTCTCCTTGCTTGAAAGCTACTGACCTTCAGGCCATGAGTCTTACCGTCAAACTGTGCTTTCCTCAACCAGCTCTGCTTCTGCCTACTTCAACTTCCATAAACAAACCAATTAGAACTTTGACTATAAATCCATCATCCCCAACAACCCAGAAACTTAAAGGAAGCAACTTTCTCAGTTCAGCTCCTGTTGCTGAAACCCAGCAGAAGTCTGAAATCAAACCCCTAATTGATATTCTACGTGGTTGTGAGGACATTGGGTCTTTGAAACAAGTAAAATCTGTTCATGGGTTTGCGTCAAAATCCAATCTTTCGGGCCAAGACTTGCTCGTATTGTTGAACCATGTAGTCCATGCCTATTCGAAATGCTCGGATTTTGGCACAGCTCGTAAGGTGTTTGATGAAATGTCTGAGAGAAACATATTCTCTTGGACGGTCATGATTGTTGGGTGTACTGAGAATGGTTTGTTTTTTGATGGGTTTGAGTTGTTTAGGGAGATGGTGAACAATGGAGTTTTGTCTGACAAATTTGTATATACCGCAATTATCCAGACATGTATTGGTCTAGATTGTGTTGAATTGGGCAAAATGGTGCATGCCCAGATTGTTGTGAGAGGCTTTGAAAACGATGGATTTGTTAGCACATCTCTGCTTAACATGTATGCGAAGTTTGGAGAGATTGAGGATTCATGTAGGATGTTTAATACCATGACAGAACATACACAAGTCTCCTGGAATGCAATGATTTCGGGGTTAACATCGAATGGTTTTCATATGGAAGCATTTGATCAGTTTCTCAGTATGAAGAGAAAAGGAATTAGACTGAATAAGTATACTCTCGTCAGTGTATCAAAAGCTGTTGGGCAACTAGGTGATGGTAACAAGTGCAAAATTATTCACAGTTGTGCATCTGAATTGGGTGTTGAGTCTAGTGTTCTTGTGGGAACGGCTCTCATTGATATGTACTCCAAGTGCAAGTCTTTGTCGGATGCAAGATCAGTTTTTGACATGAATTTCATTAGCTGTGAAGTCAATATGCCATGGAATGCGATGATTTGTGGATATTCACTGTGTGGTTACAGCGAACAAGCGTTGGAACTTTTTGTGAGAATGTGCAGAAACAATGTACAACCAGACCTTTACACTTATTGCAGTGTGTTCAATGCAATAGCTGCATTAAAATTCTTGCATTTGGGTAAGGAAATTCATGCTATGGTTTTAAAGTCTGGGGCAGAAATGAAGGGAACAAGTGTTTCCAATGCAATTGCTGATGCATATGCCAAATGTGGCTTACTTGAAGATGTACAGAAGGTTTTTGACAGAACAGAAGAGAGAGATATAGTGTCGTGGACGACTTTGGTGACTGCTTATTCTCAATGTTCTGAGTGGGAGGATGCGCTGACAATCTTCTCAAAGATGAGGGATGAAGGATTTACACCAAATCAGTTCACTCTCTCTAGTGTACTTGTTGCATGTGCCAGCCTTTGTTCACTTGAGTATGGTCAGCAAGTCCATGGCCTCCTGTGCAAGGCTGGCTTGGACACAGGCAAGTGCACTGAAAGCGCTCTTGTTGATATGTACGCCAAATGTGGTAATATAACTGAGGCGCAGGAGGTCTTTGAGAGGATTACTGACCCCGATACAATTTCATGGACTGCCATTATATCAGCCTATGCTCAACATGGTCTTGTGGAGGATGCCCTTGAACTCTATGGTAGAATGGAGCAGTCGGGTGTGAAGGTCAATGATGTTACCTTATTGTGTGTTCTCTTTGCGTGCAGCCACAGAGGTATGGTAGAAGAAGGTCTCCATCATTTCAGTTTGATGGAACAATCTTGTGATCTGGTGCCGAAGATGGAACATTACGCTTGTATTGTTGATCTCTTAGGCCGCGTGGGCCGTCTTAATGATGCAATGGACTTCATCAAAAGGATGCCAATTGAGCCCAACGAAATGGTTTGGCAGGCTTTGTTGGCAGCATGTAGGGTCCATGAAAATGCGGAGTTGGGGGAGATTGCAGCTGAGAAGATCCTTTCCATTAGGCCAGAACACTCAGCTACCTATGTTCTTCTATCCAACACATATATCAGGACAGGGAGTTATGAAGATGGACTTAGTTTGAGAGATGCGATGAAAGACCGCGGTGTCAAGAAGGAACCAGGATGTAGTTGGATTTCTGTGAAAGGTAGAGTCCACAAATTTTATGCAGGAGATCAACAACATTCAGAAAAACATGACATATATGCAATCTTAGAAGAGCTAAGAGTGAAGATTAAGTCCTTGGGTTACATCCCGGACTTGAATTATGTATTGCAAGATCCACATCTAGCATTAAATACAGTAATGCCGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2

Protein Analysis

788

Amino Acids

87.62

Weight (kDa)

5.74

Isoelectric Point (pI)

36.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 143 - 190 3.1e-07 PPR repeat family
PPR PF01535 146 - 176 1e-05 PPR repeat
PPR_2 PF13041 246 - 284 2.3e-07 PPR repeat family
PPR PF01535 247 - 277 2e-06 PPR repeat
PPR_2 PF13041 352 - 394 4.4e-10 PPR repeat family
PPR_2 PF13041 449 - 497 4e-10 PPR repeat family
PPR PF01535 452 - 482 3.8e-06 PPR repeat
PPR_2 PF13041 550 - 597 6.1e-10 PPR repeat family
PPR PF01535 553 - 583 2.1e-08 PPR repeat
E_motif PF20431 668 - 729 2.6e-16 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017394)

Species Orthologous Gene IDs
malus_domestica MD07G1229500.v1.1
prunus_persica Prupe.2G259700_v2.0.a1
pyrus_communis pycom07g20760
rosa_laevigata RLG00000026956
rosa_multiflora Rmu_sc0000809.1_g000018
rosa_roxburghii Rroxscaffold_4G00285630
rosa_rugosa Rorug01G0364300 Rorug01G0364400
rosa_samantha Rh1AG374700 Rh1BG338100 Rh1CG351400 Rh1DG369100
rosa_wichuraiana Rw1G032960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 2156
AccB1I GGYRCC 1 cut(s) 1858
AccI GTMKAC 1 cut(s) 845
AccII CGCG 2 cut(s) 1905, 2154
AciI CCGC 5 cut(s) 552, 1903, 2012, 2152, 2154
AclWI GGATC 2 cut(s) 2035, 2324
AcsI RAATTY 5 cut(s) 539, 1024, 1193, 1215, 2210
AcuI CTGAAG 1 cut(s) 26
AdeI CACNNNGTG 1 cut(s) 1085
AfaI GTAC 6 cut(s) 466, 977, 1140, 1317, 1476, 1592
AfeI AGCGCT 1 cut(s) 1576
AfiI CCNNNNNNNGG 1 cut(s) 1540
AflIII ACRYGT 2 cut(s) 566, 669
AhdI GACNNNNNGTC 1 cut(s) 271
AjnI CCWGG 2 cut(s) 743, 2170
AleI CACNNNNGTG 1 cut(s) 915
Alw21I GWGCWC 1 cut(s) 1568
Alw26I GTCTC 2 cut(s) 745, 1823
Alw44I GTGCAC 1 cut(s) 1564
AlwI GGATC 2 cut(s) 2035, 2324
AlwNI CAGNNNCTG 1 cut(s) 200
Aor51HI AGCGCT 1 cut(s) 1576
AoxI GGCC 6 cut(s) 45, 328, 1528, 1900, 1909, 2054
ApaLI GTGCAC 1 cut(s) 1564
ApeKI GCWGC 4 cut(s) 1184, 1791, 1988, 2030
ApoI RAATTY 5 cut(s) 539, 1024, 1193, 1215, 2210
AspLEI GCGC 4 cut(s) 6, 1411, 1577, 1621
AspS9I GGNCC 3 cut(s) 328, 1909, 1999
AsuC2I CCSGG 1 cut(s) 2306
AsuHPI GGTGA 3 cut(s) 526, 896, 1384
AsuII TTCGAA 1 cut(s) 374
AvaII GGWCC 1 cut(s) 1999
BaeGI GKGCMC 1 cut(s) 1568
BanI GGYRCC 1 cut(s) 1858
BanII GRGCYC 1 cut(s) 1959
Bbv12I GWGCWC 1 cut(s) 1568
BbvI GCAGC 4 cut(s) 1171, 1803, 2000, 2042
BceAI ACGGC 2 cut(s) 975, 1896
BcgI CGANNNNNNTGC 2 cut(s) 741, 775
BciT130I CCWGG 2 cut(s) 745, 2172
BclI TGATCA 1 cut(s) 799
BcnI CCSGG 1 cut(s) 2306
BcoDI GTCTC 2 cut(s) 745, 1823
BfaI CTAG 5 cut(s) 578, 881, 942, 1470, 2339
BfoI RGCGCY 1 cut(s) 1578
BglI GCCNNNNNGGC 1 cut(s) 1908
BisI GCNGC 5 cut(s) 1185, 1792, 1903, 1989, 2031
BlsI GCNGC 5 cut(s) 1186, 1793, 1904, 1990, 2032
Bme1390I CCNGG 3 cut(s) 745, 2172, 2306
Bme18I GGWCC 1 cut(s) 1999
BmeRI GACNNNNNGTC 1 cut(s) 271
BmgT120I GGNCC 3 cut(s) 328, 1909, 1999
BmiI GGNNCC 3 cut(s) 1860, 2000, 2169
BmrFI CCNGG 3 cut(s) 745, 2172, 2306
BmsI GCATC 8 cut(s) 929, 991, 1273, 1396, 1699, 1912, 1935, 2128
Bpu14I TTCGAA 1 cut(s) 374
BpuEI CTTGAG 1 cut(s) 1526
BpuMI CCSGG 1 cut(s) 2306
BsaAI YACGTR 1 cut(s) 254
BsaBI GATNNNNATC 1 cut(s) 2334
BsaI GGTCTC 1 cut(s) 1823
BsaJI CCNNGG 4 cut(s) 1052, 1525, 2152, 2292
Bsc4I CCNNNNNNNGG 1 cut(s) 1540
Bse3DI GCAATG 2 cut(s) 759, 1932
Bse8I GATNNNNATC 1 cut(s) 2334
BseBI CCWGG 2 cut(s) 745, 2172
BseDI CCNNGG 4 cut(s) 1052, 1525, 2152, 2292
BseGI GGATG 9 cut(s) 149, 714, 1006, 1411, 1441, 1714, 1950, 2180, 2301
BseJI GATNNNNATC 1 cut(s) 2334
BseLI CCNNNNNNNGG 1 cut(s) 1540
BseMI GCAATG 2 cut(s) 759, 1932
BseMII CTCAG 8 cut(s) 202, 414, 459, 823, 1386, 1605, 2025, 2079
BseSI GKGCMC 1 cut(s) 1568
BseXI GCAGC 4 cut(s) 1171, 1803, 2000, 2042
BseYI CCCAGC 1 cut(s) 213
BsgI GTGCAG 2 cut(s) 1147, 1810
Bsh1236I CGCG 2 cut(s) 1905, 2154
BshFI GGCC 6 cut(s) 47, 330, 1530, 1902, 1911, 2056
BshNI GGYRCC 1 cut(s) 1858
BsiHKAI GWGCWC 1 cut(s) 1568
BsiSI CCGG 2 cut(s) 2306, 2360
BslI CCNNNNNNNGG 1 cut(s) 1540
BsmAI GTCTC 2 cut(s) 745, 1823
BsmI GAATGC 2 cut(s) 754, 1063
BsnI GGCC 6 cut(s) 47, 330, 1530, 1902, 1911, 2056
Bso31I GGTCTC 1 cut(s) 1823
Bsp119I TTCGAA 1 cut(s) 374
Bsp1286I GDGCHC 2 cut(s) 1568, 1959
Bsp1407I TGTACA 2 cut(s) 1138, 1315
Bsp143I GATC 7 cut(s) 799, 1007, 1852, 1891, 2040, 2224, 2329
Bsp19I CCATGG 2 cut(s) 1052, 1525
BspACI CCGC 5 cut(s) 552, 1903, 2012, 2152, 2154
BspANI GGCC 6 cut(s) 47, 330, 1530, 1902, 1911, 2056
BspCNI CTCAG 8 cut(s) 201, 415, 460, 822, 1387, 1606, 2026, 2078
BspFNI CGCG 2 cut(s) 1905, 2154
BspHI TCATGA 1 cut(s) 450
BspLI GGNNCC 3 cut(s) 1860, 2000, 2169
BspPI GGATC 2 cut(s) 2035, 2324
BspQI GCTCTTC 1 cut(s) 2262
BspT104I TTCGAA 1 cut(s) 374
BspT107I GGYRCC 1 cut(s) 1858
BspTNI GGTCTC 1 cut(s) 1823
BsrDI GCAATG 2 cut(s) 759, 1932
BsrGI TGTACA 2 cut(s) 1138, 1315
BssECI CCNNGG 4 cut(s) 1052, 1525, 2152, 2292
BssMI GATC 7 cut(s) 799, 1007, 1852, 1891, 2040, 2224, 2329
BssNAI GTATAC 1 cut(s) 846
BssT1I CCWWGG 3 cut(s) 1052, 1525, 2292
Bst1107I GTATAC 1 cut(s) 846
Bst2UI CCWGG 2 cut(s) 745, 2172
Bst4CI ACNGT 6 cut(s) 61, 69, 448, 914, 1083, 2353
Bst6I CTCTTC 3 cut(s) 812, 1335, 2262
BstAPI GCANNNNNTGC 1 cut(s) 1184
BstAUI TGTACA 2 cut(s) 1138, 1315
BstBAI YACGTR 1 cut(s) 254
BstBI TTCGAA 1 cut(s) 374
BstC8I GCNNGC 5 cut(s) 609, 1492, 1546, 1789, 1977
BstDSI CCRYGG 3 cut(s) 1052, 1525, 2152
BstENI CCTNNNNNAGG 1 cut(s) 1538
BstF5I GGATG 9 cut(s) 149, 714, 1006, 1411, 1441, 1714, 1950, 2180, 2301
BstFNI CGCG 2 cut(s) 1905, 2154
BstH2I RGCGCY 1 cut(s) 1578
BstHHI GCGC 4 cut(s) 6, 1411, 1577, 1621
BstKTI GATC 7 cut(s) 802, 1010, 1855, 1894, 2043, 2227, 2332
BstMAI GTCTC 2 cut(s) 745, 1823
BstMBI GATC 7 cut(s) 799, 1007, 1852, 1891, 2040, 2224, 2329
BstMWI GCNNNNNNNGC 8 cut(s) 203, 1184, 1536, 1545, 1572, 1908, 1954, 1985
BstNI CCWGG 2 cut(s) 745, 2172
BstNSI RCATGY 5 cut(s) 570, 611, 673, 1488, 1995
BstSCI CCNGG 3 cut(s) 743, 2170, 2304
BstSLI GKGCMC 1 cut(s) 1568
BstUI CGCG 2 cut(s) 1905, 2154
BstV1I GCAGC 4 cut(s) 1171, 1803, 2000, 2042
BstX2I RGATCY 2 cut(s) 2040, 2329
BstXI CCANNNNNNTGG 1 cut(s) 1966
BstYI RGATCY 2 cut(s) 2040, 2329
BstZ17I GTATAC 1 cut(s) 846
BsuRI GGCC 6 cut(s) 47, 330, 1530, 1902, 1911, 2056
BtgI CCRYGG 3 cut(s) 1052, 1525, 2152
BtgZI GCGATG 2 cut(s) 1076, 2156
BtsCI GGATG 9 cut(s) 149, 714, 1006, 1411, 1441, 1714, 1950, 2180, 2301
BtsI GCAGTG 1 cut(s) 1171
BtsIMutI CAGTG 4 cut(s) 862, 1079, 1171, 1566
Cac8I GCNNGC 5 cut(s) 609, 1492, 1546, 1789, 1977
CaiI CAGNNNCTG 1 cut(s) 200
CciI TCATGA 1 cut(s) 450
CfoI GCGC 4 cut(s) 6, 1411, 1577, 1621
Cfr13I GGNCC 3 cut(s) 328, 1909, 1999
Cfr42I CCGCGG 1 cut(s) 2155
CseI GACGC 1 cut(s) 297
Csp6I GTAC 6 cut(s) 465, 976, 1139, 1316, 1475, 1591
CviQI GTAC 6 cut(s) 465, 976, 1139, 1316, 1475, 1591
DpnI GATC 7 cut(s) 801, 1009, 1854, 1893, 2042, 2226, 2331
DpnII GATC 7 cut(s) 799, 1007, 1852, 1891, 2040, 2224, 2329
DraI TTTAAA 1 cut(s) 1233
DraIII CACNNNGTG 1 cut(s) 1085
DrdI GACNNNNNNGTC 1 cut(s) 2156
DriI GACNNNNNGTC 1 cut(s) 271
DseDI GACNNNNNNGTC 1 cut(s) 2156
Eam1104I CTCTTC 3 cut(s) 812, 1335, 2262
Eam1105I GACNNNNNGTC 1 cut(s) 271
EarI CTCTTC 3 cut(s) 812, 1335, 2262
Eco130I CCWWGG 3 cut(s) 1052, 1525, 2292
Eco24I GRGCYC 1 cut(s) 1959
Eco31I GGTCTC 1 cut(s) 1823
Eco47I GGWCC 1 cut(s) 1999
Eco47III AGCGCT 1 cut(s) 1576
Eco57I CTGAAG 1 cut(s) 26
EcoNI CCTNNNNNAGG 1 cut(s) 1538
EcoRII CCWGG 2 cut(s) 743, 2170
EcoT14I CCWWGG 3 cut(s) 1052, 1525, 2292
EcoT22I ATGCAT 1 cut(s) 1288
EcoT38I GRGCYC 1 cut(s) 1959
ErhI CCWWGG 3 cut(s) 1052, 1525, 2292
FalI AAGNNNNNCTT 4 cut(s) 1532, 1564, 2109, 2141
FauNDI CATATG 2 cut(s) 786, 1288
FbaI TGATCA 1 cut(s) 799
FblI GTMKAC 1 cut(s) 845
Fnu4HI GCNGC 5 cut(s) 1185, 1792, 1903, 1989, 2031
FokI GGATG 9 cut(s) 136, 721, 1013, 1418, 1448, 1721, 1957, 2187, 2288
FriOI GRGCYC 1 cut(s) 1959
Fsp4HI GCNGC 5 cut(s) 1185, 1792, 1903, 1989, 2031
FspBI CTAG 5 cut(s) 578, 881, 942, 1470, 2339
GlaI GCGC 4 cut(s) 5, 1410, 1576, 1620
GluI GCNGC 5 cut(s) 1185, 1792, 1903, 1989, 2031
GsaI CCCAGC 1 cut(s) 217
HaeII RGCGCY 1 cut(s) 1578
HaeIII GGCC 6 cut(s) 47, 330, 1530, 1902, 1911, 2056
HapII CCGG 2 cut(s) 2306, 2360
HgaI GACGC 1 cut(s) 297
HhaI GCGC 4 cut(s) 6, 1411, 1577, 1621
Hin6I GCGC 4 cut(s) 4, 1409, 1575, 1619
HinP1I GCGC 4 cut(s) 4, 1409, 1575, 1619
HincII GTYRAC 1 cut(s) 768
HindII GTYRAC 1 cut(s) 768
HinfI GANTC 4 cut(s) 52, 698, 938, 2202
HpaI GTTAAC 1 cut(s) 768
HpaII CCGG 2 cut(s) 2306, 2360
HphI GGTGA 3 cut(s) 526, 896, 1384
Hpy188I TCNGA 8 cut(s) 226, 385, 424, 535, 925, 1000, 1396, 2239
Hpy188III TCNNGA 5 cut(s) 451, 562, 578, 2101, 2161
HpyAV CCTTC 7 cut(s) 50, 1246, 1315, 1433, 1744, 1808, 2158
HpyCH4III ACNGT 6 cut(s) 61, 69, 448, 914, 1083, 2353
HpyCH4IV ACGT 1 cut(s) 253
HpyF10VI GCNNNNNNNGC 8 cut(s) 203, 1184, 1536, 1545, 1572, 1908, 1954, 1985
HpySE526I ACGT 1 cut(s) 253
HspAI GCGC 4 cut(s) 4, 1409, 1575, 1619
Ksp22I TGATCA 1 cut(s) 799
KspAI GTTAAC 1 cut(s) 768
KspI CCGCGG 1 cut(s) 2155
Kzo9I GATC 7 cut(s) 799, 1007, 1852, 1891, 2040, 2224, 2329
LguI GCTCTTC 1 cut(s) 2262
LmnI GCTCC 2 cut(s) 202, 1735
Lsp1109I GCAGC 4 cut(s) 1171, 1803, 2000, 2042
LweI GCATC 8 cut(s) 929, 991, 1273, 1396, 1699, 1912, 1935, 2128
MaeI CTAG 5 cut(s) 578, 881, 942, 1470, 2339
MaeII ACGT 1 cut(s) 253
MaeIII GTNAC 5 cut(s) 890, 1088, 1372, 1762, 2297
MalI GATC 7 cut(s) 801, 1009, 1854, 1893, 2042, 2226, 2331
MboI GATC 7 cut(s) 799, 1007, 1852, 1891, 2040, 2224, 2329
MfeI CAATTG 2 cut(s) 1275, 1950
MflI RGATCY 2 cut(s) 2040, 2329
MhlI GDGCHC 2 cut(s) 1568, 1959
MlyI GAGTC 3 cut(s) 61, 947, 2211
MmeI TCCRAC 4 cut(s) 978, 1086, 2112, 2162
Mph1103I ATGCAT 1 cut(s) 1288
MseI TTAA 9 cut(s) 171, 666, 714, 767, 1190, 1232, 1917, 2286, 2345
MslI CAYNNNNRTG 3 cut(s) 915, 971, 2007
MspA1I CMGCKG 2 cut(s) 2033, 2154
MspI CCGG 2 cut(s) 2306, 2360
MspR9I CCNGG 3 cut(s) 745, 2172, 2306
MunI CAATTG 2 cut(s) 1275, 1950
Mva1269I GAATGC 2 cut(s) 754, 1063
MvaI CCWGG 2 cut(s) 745, 2172
MvnI CGCG 2 cut(s) 1905, 2154
MwoI GCNNNNNNNGC 8 cut(s) 203, 1184, 1536, 1545, 1572, 1908, 1954, 1985
NciI CCSGG 1 cut(s) 2306
NcoI CCATGG 2 cut(s) 1052, 1525
NdeI CATATG 2 cut(s) 786, 1288
NdeII GATC 7 cut(s) 799, 1007, 1852, 1891, 2040, 2224, 2329
NlaIV GGNNCC 3 cut(s) 1860, 2000, 2169
NmuCI GTSAC 1 cut(s) 1372
NsiI ATGCAT 1 cut(s) 1288
NspI RCATGY 5 cut(s) 570, 611, 673, 1488, 1995
NspV TTCGAA 1 cut(s) 374
OliI CACNNNNGTG 1 cut(s) 915
PaeI GCATGC 1 cut(s) 611
PagI TCATGA 1 cut(s) 450
PciI ACATGT 2 cut(s) 566, 669
PciSI GCTCTTC 1 cut(s) 2262
PctI GAATGC 2 cut(s) 754, 1063
PfeI GAWTC 1 cut(s) 698
PfoI TCCNGGA 2 cut(s) 743, 2304
PkrI GCNGC 5 cut(s) 1186, 1793, 1904, 1990, 2032
PleI GAGTC 3 cut(s) 60, 946, 2210
PpsI GAGTC 3 cut(s) 60, 946, 2210
Ppu21I YACGTR 1 cut(s) 254
PscI ACATGT 2 cut(s) 566, 669
Psp6I CCWGG 2 cut(s) 743, 2170
PspFI CCCAGC 1 cut(s) 213
PspGI CCWGG 2 cut(s) 743, 2170
PspN4I GGNNCC 3 cut(s) 1860, 2000, 2169
PspPI GGNCC 3 cut(s) 328, 1909, 1999
PsrI GAACNNNNNNTAC 2 cut(s) 279, 311
PstNI CAGNNNCTG 1 cut(s) 200
PsuI RGATCY 2 cut(s) 2040, 2329
PvuII CAGCTG 1 cut(s) 2033
RsaI GTAC 6 cut(s) 466, 977, 1140, 1317, 1476, 1592
RsaNI GTAC 6 cut(s) 465, 976, 1139, 1316, 1475, 1591
RseI CAYNNNNRTG 3 cut(s) 915, 971, 2007
SacII CCGCGG 1 cut(s) 2155
SapI GCTCTTC 1 cut(s) 2262
SaqAI TTAA 9 cut(s) 171, 666, 714, 767, 1190, 1232, 1917, 2286, 2345
SatI GCNGC 5 cut(s) 1185, 1792, 1903, 1989, 2031
Sau3AI GATC 7 cut(s) 799, 1007, 1852, 1891, 2040, 2224, 2329
Sau96I GGNCC 3 cut(s) 328, 1909, 1999
SchI GAGTC 3 cut(s) 61, 947, 2211
ScrFI CCNGG 3 cut(s) 745, 2172, 2306
SduI GDGCHC 2 cut(s) 1568, 1959
SfaNI GCATC 8 cut(s) 929, 991, 1273, 1396, 1699, 1912, 1935, 2128
SfiI GGCCNNNNNGGCC 1 cut(s) 1908
Sfr303I CCGCGG 1 cut(s) 2155
SfuI TTCGAA 1 cut(s) 374
SgrBI CCGCGG 1 cut(s) 2155
SinI GGWCC 1 cut(s) 1999
SmiMI CAYNNNNRTG 3 cut(s) 915, 971, 2007
SmlI CTYRAG 1 cut(s) 1505
SmoI CTYRAG 1 cut(s) 1505
SphI GCATGC 1 cut(s) 611
SsiI CCGC 5 cut(s) 552, 1903, 2012, 2152, 2154
SspMI CTAG 5 cut(s) 578, 881, 942, 1470, 2339
StyD4I CCNGG 3 cut(s) 743, 2170, 2304
StyI CCWWGG 3 cut(s) 1052, 1525, 2292
TaaI ACNGT 6 cut(s) 61, 69, 448, 914, 1083, 2353
TaiI ACGT 1 cut(s) 256
TaqI TCGA 2 cut(s) 374, 773
TatI WGTACW 5 cut(s) 464, 975, 1138, 1315, 1474
TauI GCSGC 1 cut(s) 1905
TfiI GAWTC 1 cut(s) 698
Tru1I TTAA 9 cut(s) 171, 666, 714, 767, 1190, 1232, 1917, 2286, 2345
Tru9I TTAA 9 cut(s) 171, 666, 714, 767, 1190, 1232, 1917, 2286, 2345
TscAI CASTG 4 cut(s) 862, 1086, 1171, 1573
TseFI GTSAC 1 cut(s) 1372
TseI GCWGC 4 cut(s) 1184, 1791, 1988, 2030
Tsp45I GTSAC 1 cut(s) 1372
TspRI CASTG 4 cut(s) 862, 1086, 1171, 1573
VneI GTGCAC 1 cut(s) 1564
VpaK11BI GGWCC 1 cut(s) 1999
XagI CCTNNNNNAGG 1 cut(s) 1538
XapI RAATTY 5 cut(s) 539, 1024, 1193, 1215, 2210
XbaI TCTAGA 1 cut(s) 577
XceI RCATGY 5 cut(s) 570, 611, 673, 1488, 1995
XcmI CCANNNNNNNNNTGG 2 cut(s) 569, 2178
XmiI GTMKAC 1 cut(s) 845
XspI CTAG 5 cut(s) 578, 881, 942, 1470, 2339
Zsp2I ATGCAT 1 cut(s) 1288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.