Rroxscaffold_4G00285630

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0017394
Physical Location & Seq
Reverse (-)
6901679 .. 6905433
3755 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00285630.1

Sequence Viewer

Length: 2220 bp
ATGAGTCTCACCGTCAAACTGTGCTGTCCTCAACCAGCTCTGCTTCTGCCTACTTCAATTTCCATAAACAAACCAATTAGAACTTTGACTATAAATCCATCATCCCCAACAACCCAGAAACTTAAAGGAAGCAACTTTCTCAGTTCAGCTCCTGTTGCTGAAACCCAGCAGAAGTCTGAAATCAAACCCTTAATTGATATTCTACGTGGTTGTGAGGACATTGGGTCTTTGAACCAAGTAAAATCTGTTCATGGGTTTGCGTCAAAATCCAATCTTTCGGGCCAAGACTTGCTCGTATTGTTGAACCATGTAGTCCATGGCTATTCGAAATGCTCGGATTTTGGCACAGCTCGCAAGGTGTTTGATGAAATGTCTGAGAGAAACATATTCTCTTGGACGGTCATGATTGTTGGGTGTACTGAGAATGGTTTGTTTTTTGATGGGTTTGAGTTGTTTAGGGAGATGGTGAACAATGGAGTTTTGCCTGACAAATTTGTATATACCGCAATTATCCAGACATGTATTGGTCTAGATTGTGTTGAATTGGGCAAAATGGTGCATGCCCAGATTGTTGTGAGAGGCTTTGAATATGATGGATTTGTTAGCACATCTCTGCTTAACATGTATGCCAAGTTTGGAGAGATTGAGGATTCATGTAGGATGTTTAATACCATGACAGAACATACACAAGTCTCCTGGAATGCAATGATTTCGGGGTTAACGTCAAATGGTTTTCATATGGAAGCATTTGATCAGTTTCTCAGTATGAAGAGAAAAGGAATTAGACCAAATAAGTATACTCTCGTCAGTGTATCAAAAGCTGTTGGGCAACTAGGTGATGGTAACAAGTGCAAAATTATTCACAGTTGTGCATCTGAATTGGGTGTTGAGTCTAGTGTTCTTGTGGGAACGGCTCTCATTGATATGTACTCCAAGTGCAAGTCTTTGTCGGATGCAAGATCAGTTTTTGACTTGAATTTCATTAGCTGTGAAGTCAATATGCCATGGAATGCGATGATTTGTGGATATTCACTGTGTGGTTACAGCGAACAAGCATTGGAACTTTTTGTGAGAATGTGCAGAAACAATGTACAACCAGACCTTTACACTTATTGCAGCGTGTTCAATGCAATAGCTGCATTAAAATTCTTGCATTTAGGTAAGGAAATTCATGCTATGGTTTTAAAGTCTGGGGCAGAAATGAAGGGAACAAGTGTTTCCAATGCAATTGCTGATGCATATGCCAAATGTGGCTTACTTGAAGATGTACAGAAGGTTTTTGACAGAACAGGAGAGAGAGATATAGTGTCTTGGACGACTTTGGTGACTGCTTATTCGCAATTTTCTGAGTGGGAGGATGCGCTGACAATCTTCTCAAAGATGAGGGATGAAGGATTTACACCAAATCAGTTCACTCTCTCTAGTGTACTTGTTGCATGTGCCAGCCTTTGTTCACTTGAGTATGGTCAGCAAGTCCATGGCCTCCTGTGCAAGGCTGGCTTGGACACAGGCAAGTGCACTGAAAGCGCTCTTGTTGATATGTACGCCAAATGTGGTAATATAACTGAGGCGCAGGAGGTCTTTGAGAGGATTACTGACCCCGATACAATTTCATGGACTGCCATTATATCAGCCTATGCTCAACATGGTCTTGTGGAGGATGCCCTTGAACTCTATGGTAGAATGGAGCAGTCAGGTGTGAAGGTCAATGATGTTACCCTATTGTGTGTTCTCTTTGCGTGCAGCCACAGAGGTATGGTAGAAGAAGGTCTCCATCATTTCAGTTTGATGGAACAATCTTGTGATCTGGTGCCAAAGATGGAACATTACGCTTGTATTGTTGATCTCTTAGGCCGTGTTGGCCGTCTTAATGATGCAATGGACTTCATCAAAAGGATGCCAATTGAGCCCAACGAAATGGTTTGGCAGGCTTTGTTGGCAGCATGTAGGGTCCATGAAAATGTGGAGTTGGGGGAGATTGCAGCTGAGAAGATCCTTTCCATTAGGCCAGAACACTCAGCTACCTATGTTCTTCTATCCAACACATATATCAGGACAGGGAGTTATGAAGATGGACTTAGTTTGAGAGATGCGATGAAAGACCGCGGTGTCAAGAAGGAACCAGGATGTAGTTGGATTTCTGTGAAAGGTAGAGTCCACAAATTTTATGCAGGGGATCAACAACATTCAGAAAAACATGACATATATGCAATCTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2

Protein Analysis

739

Amino Acids

81.97

Weight (kDa)

5.67

Isoelectric Point (pI)

34.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 127 - 174 1.1e-08 PPR repeat family
PPR PF01535 130 - 160 9.4e-06 PPR repeat
PPR_2 PF13041 230 - 268 8.4e-09 PPR repeat family
PPR PF01535 231 - 261 1.9e-06 PPR repeat
PPR_2 PF13041 336 - 378 4e-10 PPR repeat family
PPR_2 PF13041 433 - 481 1.8e-09 PPR repeat family
PPR PF01535 436 - 466 1e-05 PPR repeat
PPR_2 PF13041 534 - 581 5.7e-10 PPR repeat family
PPR PF01535 537 - 567 2e-08 PPR repeat
E_motif PF20431 652 - 713 5.9e-17 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017394)

Species Orthologous Gene IDs
malus_domestica MD07G1229500.v1.1
prunus_persica Prupe.2G259700_v2.0.a1
pyrus_communis pycom07g20760
rosa_laevigata RLG00000026956
rosa_multiflora Rmu_sc0000809.1_g000018
rosa_roxburghii Rroxscaffold_4G00285630
rosa_rugosa Rorug01G0364300 Rorug01G0364400
rosa_samantha Rh1AG374700 Rh1BG338100 Rh1CG351400 Rh1DG369100
rosa_wichuraiana Rw1G032960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 2108
AccB1I GGYRCC 1 cut(s) 1810
AccI GTMKAC 1 cut(s) 797
AccII CGCG 1 cut(s) 2106
AciI CCGC 3 cut(s) 504, 2104, 2106
AclWI GGATC 2 cut(s) 1987, 2184
AcoI YGGCCR 1 cut(s) 1861
AcsI RAATTY 5 cut(s) 491, 976, 1145, 1167, 2162
AdeI CACNNNGTG 1 cut(s) 1037
AfaI GTAC 6 cut(s) 418, 929, 1092, 1269, 1428, 1544
AfeI AGCGCT 1 cut(s) 1528
AfiI CCNNNNNNNGG 1 cut(s) 1492
AflIII ACRYGT 2 cut(s) 518, 621
AgsI TTSAA 9 cut(s) 57, 232, 304, 542, 587, 976, 1126, 1262, 1670
AhdI GACNNNNNGTC 1 cut(s) 223
AjnI CCWGG 2 cut(s) 695, 2122
AleI CACNNNNGTG 1 cut(s) 867
AluBI AGCT 8 cut(s) 38, 149, 350, 821, 987, 1136, 1985, 2021
AluI AGCT 8 cut(s) 38, 149, 350, 821, 987, 1136, 1985, 2021
Alw21I GWGCWC 1 cut(s) 1520
Alw26I GTCTC 3 cut(s) 11, 697, 1775
Alw44I GTGCAC 1 cut(s) 1516
AlwI GGATC 2 cut(s) 1987, 2184
AlwNI CAGNNNCTG 1 cut(s) 152
Aor51HI AGCGCT 1 cut(s) 1528
AoxI GGCC 5 cut(s) 280, 1480, 1852, 1861, 2006
ApaLI GTGCAC 1 cut(s) 1516
ApeKI GCWGC 5 cut(s) 1116, 1136, 1743, 1940, 1982
ApoI RAATTY 5 cut(s) 491, 976, 1145, 1167, 2162
ArsI GACNNNNNNTTYG 2 cut(s) 1318, 1350
AspLEI GCGC 3 cut(s) 1363, 1529, 1573
AspS9I GGNCC 2 cut(s) 280, 1951
AsuHPI GGTGA 3 cut(s) 478, 848, 1336
AsuII TTCGAA 1 cut(s) 326
AvaII GGWCC 1 cut(s) 1951
BaeGI GKGCMC 1 cut(s) 1520
BanI GGYRCC 1 cut(s) 1810
BanII GRGCYC 1 cut(s) 1911
Bbv12I GWGCWC 1 cut(s) 1520
BbvI GCAGC 5 cut(s) 1123, 1128, 1755, 1952, 1994
BccI CCATC 9 cut(s) 106, 434, 457, 587, 833, 1782, 1783, 1813, 2066
BceAI ACGGC 3 cut(s) 927, 1839, 1848
BcgI CGANNNNNNTGC 2 cut(s) 693, 727
BciT130I CCWGG 2 cut(s) 697, 2124
BclI TGATCA 1 cut(s) 751
BcoDI GTCTC 3 cut(s) 11, 697, 1775
BfaI CTAG 4 cut(s) 530, 833, 894, 1422
BfoI RGCGCY 1 cut(s) 1530
BglI GCCNNNNNGGC 1 cut(s) 1860
BisI GCNGC 5 cut(s) 1117, 1137, 1744, 1941, 1983
BlsI GCNGC 5 cut(s) 1118, 1138, 1745, 1942, 1984
Bme1390I CCNGG 2 cut(s) 697, 2124
Bme18I GGWCC 1 cut(s) 1951
BmeRI GACNNNNNGTC 1 cut(s) 223
BmgT120I GGNCC 2 cut(s) 280, 1951
BmiI GGNNCC 3 cut(s) 1812, 1952, 2121
BmrFI CCNGG 2 cut(s) 697, 2124
BmsI GCATC 8 cut(s) 881, 943, 1225, 1348, 1651, 1864, 1887, 2080
Bpu14I TTCGAA 1 cut(s) 326
BpuEI CTTGAG 1 cut(s) 1478
BsaAI YACGTR 1 cut(s) 206
BsaI GGTCTC 1 cut(s) 1775
BsaJI CCNNGG 4 cut(s) 316, 1004, 1477, 2104
Bsc4I CCNNNNNNNGG 1 cut(s) 1492
Bse3DI GCAATG 2 cut(s) 711, 1884
BseBI CCWGG 2 cut(s) 697, 2124
BseDI CCNNGG 4 cut(s) 316, 1004, 1477, 2104
BseGI GGATG 8 cut(s) 101, 666, 958, 1363, 1393, 1666, 1902, 2132
BseLI CCNNNNNNNGG 1 cut(s) 1492
BseMI GCAATG 2 cut(s) 711, 1884
BseMII CTCAG 8 cut(s) 154, 366, 411, 775, 1338, 1557, 1977, 2031
BseSI GKGCMC 1 cut(s) 1520
BseXI GCAGC 5 cut(s) 1123, 1128, 1755, 1952, 1994
BseYI CCCAGC 1 cut(s) 165
BsgI GTGCAG 2 cut(s) 1099, 1762
Bsh1236I CGCG 1 cut(s) 2106
BshFI GGCC 5 cut(s) 282, 1482, 1854, 1863, 2008
BshNI GGYRCC 1 cut(s) 1810
BsiHKAI GWGCWC 1 cut(s) 1520
BslI CCNNNNNNNGG 1 cut(s) 1492
BsmAI GTCTC 3 cut(s) 11, 697, 1775
BsmI GAATGC 2 cut(s) 706, 1015
BsnI GGCC 5 cut(s) 282, 1482, 1854, 1863, 2008
Bso31I GGTCTC 1 cut(s) 1775
Bsp119I TTCGAA 1 cut(s) 326
Bsp1286I GDGCHC 2 cut(s) 1520, 1911
Bsp1407I TGTACA 2 cut(s) 1090, 1267
Bsp143I GATC 6 cut(s) 751, 959, 1804, 1843, 1992, 2176
Bsp19I CCATGG 3 cut(s) 316, 1004, 1477
BspACI CCGC 3 cut(s) 504, 2104, 2106
BspANI GGCC 5 cut(s) 282, 1482, 1854, 1863, 2008
BspCNI CTCAG 8 cut(s) 153, 367, 412, 774, 1339, 1558, 1978, 2030
BspFNI CGCG 1 cut(s) 2106
BspHI TCATGA 1 cut(s) 402
BspLI GGNNCC 3 cut(s) 1812, 1952, 2121
BspPI GGATC 2 cut(s) 1987, 2184
BspT104I TTCGAA 1 cut(s) 326
BspT107I GGYRCC 1 cut(s) 1810
BspTNI GGTCTC 1 cut(s) 1775
BsrDI GCAATG 2 cut(s) 711, 1884
BsrGI TGTACA 2 cut(s) 1090, 1267
BssECI CCNNGG 4 cut(s) 316, 1004, 1477, 2104
BssMI GATC 6 cut(s) 751, 959, 1804, 1843, 1992, 2176
BssNAI GTATAC 1 cut(s) 798
BssT1I CCWWGG 3 cut(s) 316, 1004, 1477
Bst1107I GTATAC 1 cut(s) 798
Bst2UI CCWGG 2 cut(s) 697, 2124
Bst4CI ACNGT 5 cut(s) 13, 21, 400, 866, 1035
Bst6I CTCTTC 1 cut(s) 764
BstAPI GCANNNNNTGC 1 cut(s) 1136
BstAUI TGTACA 2 cut(s) 1090, 1267
BstBAI YACGTR 1 cut(s) 206
BstBI TTCGAA 1 cut(s) 326
BstC8I GCNNGC 6 cut(s) 352, 561, 1444, 1498, 1741, 1929
BstDSI CCRYGG 4 cut(s) 316, 1004, 1477, 2104
BstENI CCTNNNNNAGG 1 cut(s) 1490
BstF5I GGATG 8 cut(s) 101, 666, 958, 1363, 1393, 1666, 1902, 2132
BstFNI CGCG 1 cut(s) 2106
BstH2I RGCGCY 1 cut(s) 1530
BstHHI GCGC 3 cut(s) 1363, 1529, 1573
BstKTI GATC 6 cut(s) 754, 962, 1807, 1846, 1995, 2179
BstMAI GTCTC 3 cut(s) 11, 697, 1775
BstMBI GATC 6 cut(s) 751, 959, 1804, 1843, 1992, 2176
BstMWI GCNNNNNNNGC 9 cut(s) 155, 351, 1136, 1488, 1497, 1524, 1860, 1906, 1937
BstNI CCWGG 2 cut(s) 697, 2124
BstNSI RCATGY 5 cut(s) 522, 563, 625, 1440, 1947
BstSCI CCNGG 2 cut(s) 695, 2122
BstSLI GKGCMC 1 cut(s) 1520
BstUI CGCG 1 cut(s) 2106
BstV1I GCAGC 5 cut(s) 1123, 1128, 1755, 1952, 1994
BstX2I RGATCY 1 cut(s) 1992
BstXI CCANNNNNNTGG 1 cut(s) 1918
BstYI RGATCY 1 cut(s) 1992
BstZ17I GTATAC 1 cut(s) 798
BsuRI GGCC 5 cut(s) 282, 1482, 1854, 1863, 2008
BtgI CCRYGG 4 cut(s) 316, 1004, 1477, 2104
BtgZI GCGATG 2 cut(s) 1028, 2108
BtsCI GGATG 8 cut(s) 101, 666, 958, 1363, 1393, 1666, 1902, 2132
BtsIMutI CAGTG 3 cut(s) 814, 1031, 1518
Cac8I GCNNGC 6 cut(s) 352, 561, 1444, 1498, 1741, 1929
CaiI CAGNNNCTG 1 cut(s) 152
CciI TCATGA 1 cut(s) 402
CfoI GCGC 3 cut(s) 1363, 1529, 1573
Cfr13I GGNCC 2 cut(s) 280, 1951
Cfr42I CCGCGG 1 cut(s) 2107
CseI GACGC 1 cut(s) 249
Csp6I GTAC 6 cut(s) 417, 928, 1091, 1268, 1427, 1543
CviQI GTAC 6 cut(s) 417, 928, 1091, 1268, 1427, 1543
DpnI GATC 6 cut(s) 753, 961, 1806, 1845, 1994, 2178
DpnII GATC 6 cut(s) 751, 959, 1804, 1843, 1992, 2176
DraI TTTAAA 1 cut(s) 1185
DraIII CACNNNGTG 1 cut(s) 1037
DrdI GACNNNNNNGTC 1 cut(s) 2108
DriI GACNNNNNGTC 1 cut(s) 223
DseDI GACNNNNNNGTC 1 cut(s) 2108
EaeI YGGCCR 1 cut(s) 1861
Eam1104I CTCTTC 1 cut(s) 764
Eam1105I GACNNNNNGTC 1 cut(s) 223
EarI CTCTTC 1 cut(s) 764
Eco130I CCWWGG 3 cut(s) 316, 1004, 1477
Eco24I GRGCYC 1 cut(s) 1911
Eco31I GGTCTC 1 cut(s) 1775
Eco47I GGWCC 1 cut(s) 1951
Eco47III AGCGCT 1 cut(s) 1528
EcoNI CCTNNNNNAGG 1 cut(s) 1490
EcoRII CCWGG 2 cut(s) 695, 2122
EcoT14I CCWWGG 3 cut(s) 316, 1004, 1477
EcoT22I ATGCAT 1 cut(s) 1240
EcoT38I GRGCYC 1 cut(s) 1911
ErhI CCWWGG 3 cut(s) 316, 1004, 1477
FalI AAGNNNNNCTT 4 cut(s) 1484, 1516, 2061, 2093
FauNDI CATATG 2 cut(s) 738, 1240
FbaI TGATCA 1 cut(s) 751
FblI GTMKAC 1 cut(s) 797
Fnu4HI GCNGC 5 cut(s) 1117, 1137, 1744, 1941, 1983
FokI GGATG 8 cut(s) 88, 673, 965, 1370, 1400, 1673, 1909, 2139
FriOI GRGCYC 1 cut(s) 1911
Fsp4HI GCNGC 5 cut(s) 1117, 1137, 1744, 1941, 1983
FspBI CTAG 4 cut(s) 530, 833, 894, 1422
GlaI GCGC 3 cut(s) 1362, 1528, 1572
GluI GCNGC 5 cut(s) 1117, 1137, 1744, 1941, 1983
GsaI CCCAGC 1 cut(s) 169
HaeII RGCGCY 1 cut(s) 1530
HaeIII GGCC 5 cut(s) 282, 1482, 1854, 1863, 2008
HgaI GACGC 1 cut(s) 249
HhaI GCGC 3 cut(s) 1363, 1529, 1573
Hin6I GCGC 3 cut(s) 1361, 1527, 1571
HinP1I GCGC 3 cut(s) 1361, 1527, 1571
HincII GTYRAC 1 cut(s) 720
HindII GTYRAC 1 cut(s) 720
HinfI GANTC 4 cut(s) 4, 650, 890, 2154
HpaI GTTAAC 1 cut(s) 720
HphI GGTGA 3 cut(s) 478, 848, 1336
Hpy166II GTNNAC 9 cut(s) 417, 469, 720, 798, 1413, 1427, 1454, 1518, 2158
Hpy188I TCNGA 7 cut(s) 178, 337, 376, 877, 952, 1348, 2191
Hpy188III TCNNGA 5 cut(s) 403, 514, 530, 2053, 2113
Hpy8I GTNNAC 9 cut(s) 417, 469, 720, 798, 1413, 1427, 1454, 1518, 2158
HpyAV CCTTC 6 cut(s) 1198, 1267, 1385, 1696, 1760, 2110
HpyCH4III ACNGT 5 cut(s) 13, 21, 400, 866, 1035
HpyCH4IV ACGT 2 cut(s) 205, 722
HpyF10VI GCNNNNNNNGC 9 cut(s) 155, 351, 1136, 1488, 1497, 1524, 1860, 1906, 1937
HpySE526I ACGT 2 cut(s) 205, 722
HspAI GCGC 3 cut(s) 1361, 1527, 1571
Ksp22I TGATCA 1 cut(s) 751
KspAI GTTAAC 1 cut(s) 720
KspI CCGCGG 1 cut(s) 2107
Kzo9I GATC 6 cut(s) 751, 959, 1804, 1843, 1992, 2176
LmnI GCTCC 2 cut(s) 154, 1687
Lsp1109I GCAGC 5 cut(s) 1123, 1128, 1755, 1952, 1994
LweI GCATC 8 cut(s) 881, 943, 1225, 1348, 1651, 1864, 1887, 2080
MaeI CTAG 4 cut(s) 530, 833, 894, 1422
MaeII ACGT 2 cut(s) 205, 722
MaeIII GTNAC 4 cut(s) 842, 1040, 1324, 1714
MalI GATC 6 cut(s) 753, 961, 1806, 1845, 1994, 2178
MboI GATC 6 cut(s) 751, 959, 1804, 1843, 1992, 2176
MboII GAAGA 8 cut(s) 781, 1274, 1363, 1775, 2002, 2024, 2081, 2206
MfeI CAATTG 2 cut(s) 1227, 1902
MflI RGATCY 1 cut(s) 1992
MhlI GDGCHC 2 cut(s) 1520, 1911
MlyI GAGTC 3 cut(s) 13, 899, 2163
MmeI TCCRAC 3 cut(s) 930, 2064, 2114
Mph1103I ATGCAT 1 cut(s) 1240
MseI TTAA 8 cut(s) 123, 191, 618, 666, 719, 1142, 1184, 1869
MslI CAYNNNNRTG 3 cut(s) 867, 923, 1959
MspA1I CMGCKG 2 cut(s) 1985, 2106
MspR9I CCNGG 2 cut(s) 697, 2124
MunI CAATTG 2 cut(s) 1227, 1902
Mva1269I GAATGC 2 cut(s) 706, 1015
MvaI CCWGG 2 cut(s) 697, 2124
MvnI CGCG 1 cut(s) 2106
MwoI GCNNNNNNNGC 9 cut(s) 155, 351, 1136, 1488, 1497, 1524, 1860, 1906, 1937
NcoI CCATGG 3 cut(s) 316, 1004, 1477
NdeI CATATG 2 cut(s) 738, 1240
NdeII GATC 6 cut(s) 751, 959, 1804, 1843, 1992, 2176
NlaIV GGNNCC 3 cut(s) 1812, 1952, 2121
NmuCI GTSAC 1 cut(s) 1324
NsiI ATGCAT 1 cut(s) 1240
NspI RCATGY 5 cut(s) 522, 563, 625, 1440, 1947
NspV TTCGAA 1 cut(s) 326
OliI CACNNNNGTG 1 cut(s) 867
PaeI GCATGC 1 cut(s) 563
PagI TCATGA 1 cut(s) 402
PciI ACATGT 2 cut(s) 518, 621
PcsI WCGNNNNNNNCGW 1 cut(s) 719
PctI GAATGC 2 cut(s) 706, 1015
PfeI GAWTC 1 cut(s) 650
PfoI TCCNGGA 1 cut(s) 695
PkrI GCNGC 5 cut(s) 1118, 1138, 1745, 1942, 1984
PleI GAGTC 3 cut(s) 12, 898, 2162
PpsI GAGTC 3 cut(s) 12, 898, 2162
Ppu21I YACGTR 1 cut(s) 206
PscI ACATGT 2 cut(s) 518, 621
Psp6I CCWGG 2 cut(s) 695, 2122
PspFI CCCAGC 1 cut(s) 165
PspGI CCWGG 2 cut(s) 695, 2122
PspN4I GGNNCC 3 cut(s) 1812, 1952, 2121
PspPI GGNCC 2 cut(s) 280, 1951
PsrI GAACNNNNNNTAC 2 cut(s) 231, 263
PstNI CAGNNNCTG 1 cut(s) 152
PsuI RGATCY 1 cut(s) 1992
PvuII CAGCTG 1 cut(s) 1985
RsaI GTAC 6 cut(s) 418, 929, 1092, 1269, 1428, 1544
RsaNI GTAC 6 cut(s) 417, 928, 1091, 1268, 1427, 1543
RseI CAYNNNNRTG 3 cut(s) 867, 923, 1959
SacII CCGCGG 1 cut(s) 2107
SaqAI TTAA 8 cut(s) 123, 191, 618, 666, 719, 1142, 1184, 1869
SatI GCNGC 5 cut(s) 1117, 1137, 1744, 1941, 1983
Sau3AI GATC 6 cut(s) 751, 959, 1804, 1843, 1992, 2176
Sau96I GGNCC 2 cut(s) 280, 1951
SchI GAGTC 3 cut(s) 13, 899, 2163
ScrFI CCNGG 2 cut(s) 697, 2124
SduI GDGCHC 2 cut(s) 1520, 1911
SfaNI GCATC 8 cut(s) 881, 943, 1225, 1348, 1651, 1864, 1887, 2080
SfiI GGCCNNNNNGGCC 1 cut(s) 1860
Sfr303I CCGCGG 1 cut(s) 2107
SfuI TTCGAA 1 cut(s) 326
SgrBI CCGCGG 1 cut(s) 2107
SinI GGWCC 1 cut(s) 1951
SmiMI CAYNNNNRTG 3 cut(s) 867, 923, 1959
SmlI CTYRAG 1 cut(s) 1457
SmoI CTYRAG 1 cut(s) 1457
SphI GCATGC 1 cut(s) 563
SsiI CCGC 3 cut(s) 504, 2104, 2106
SspMI CTAG 4 cut(s) 530, 833, 894, 1422
StyD4I CCNGG 2 cut(s) 695, 2122
StyI CCWWGG 3 cut(s) 316, 1004, 1477
TaaI ACNGT 5 cut(s) 13, 21, 400, 866, 1035
TaiI ACGT 2 cut(s) 208, 725
TaqI TCGA 1 cut(s) 326
TatI WGTACW 5 cut(s) 416, 927, 1090, 1267, 1426
TfiI GAWTC 1 cut(s) 650
Tru1I TTAA 8 cut(s) 123, 191, 618, 666, 719, 1142, 1184, 1869
Tru9I TTAA 8 cut(s) 123, 191, 618, 666, 719, 1142, 1184, 1869
TscAI CASTG 3 cut(s) 814, 1038, 1525
TseFI GTSAC 1 cut(s) 1324
TseI GCWGC 5 cut(s) 1116, 1136, 1743, 1940, 1982
Tsp45I GTSAC 1 cut(s) 1324
TspRI CASTG 3 cut(s) 814, 1038, 1525
VneI GTGCAC 1 cut(s) 1516
VpaK11BI GGWCC 1 cut(s) 1951
XagI CCTNNNNNAGG 1 cut(s) 1490
XapI RAATTY 5 cut(s) 491, 976, 1145, 1167, 2162
XbaI TCTAGA 1 cut(s) 529
XceI RCATGY 5 cut(s) 522, 563, 625, 1440, 1947
XcmI CCANNNNNNNNNTGG 3 cut(s) 314, 521, 2130
XmiI GTMKAC 1 cut(s) 797
XspI CTAG 4 cut(s) 530, 833, 894, 1422
Zsp2I ATGCAT 1 cut(s) 1240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.