Rh1CG351400

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0017394
Physical Location & Seq
Forward (+)
62740888 .. 62745377
4490 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG351400.1

Sequence Viewer

Length: 2367 bp
ATGCGCCATCACTACTCTCCTTGCTTGAAAGCTACTGACCTTCAGGCCATGAGTCTTACCGTCAAACTGTGCTTTCCTCAACCAGCTCTGCTTCTGCCTACTTCAACTTCCATAAACAAACCAATTAGAACTTTGACTATAAATCCATCATCCCCAACAACCCAGAAACTTAAAGGAAGCAACTTTCTCAGTTCAGCTCCTGTTGCTGAAACCCAGCAGAAGTCTGAAATCAAACCCCTAATTGATATTCTACGTGGTTGTGAGGACATTGGGTCTTTGAAACAAGTAAAATCTGTTCATGGGTTTGCGTCAAAATCCAATCTTTCGGGCCAAGACTTGCTCGTATTGTTGAACCATGTAGTCCATGCCTATTCGAAATGCTCGGATTTTGGCACAGCTCGTAAGGTGTTTGATGAAATGTCTGAGAGAAACATATTCTCTTGGACGGTCATGATTGTTGGGTGTACTGAGAATGGTTTGTTTTTTGATGGGTTTGAGTTGTTTAGGGAGATGGTGAACAATGGAGTTTTGTCTGACAAATTTGTATATACCGCAATTATCCAGACATGTATTGGTCTAGATTGTGTTGAATTGGGCAAAATGGTGCATGCCCAGATTGTTGTGAGAGGCTTTGAAAACGATGGATTTGTTAGCACATCTCTGCTTAACATGTATGCGAAGTTTGGAGAGATTGAGGATTCATGTAGGATGTTTAATACCATGACAGAACATACACAAGTCTCCTGGAATGCAATGATTTCGGGGTTAACATCGAATGGTTTTCATATGGAAGCATTTGATCAGTTTCTCAGTATGAAGAGAAAAGGAATTAGACTGAATAAGTATACTCTCGTCAGTGTATCAAAAGCTGTTGGGCAACTAGGTGATGGTAACAAGTGCAAAATTATTCACAGTTGTGCATCTGAATTGGGTGTTGAGTCTAGTGTTCTTGTGGGAACGGCTCTCATTGATATGTACTCCAAGTGCAAGTCTTTGTCGGATGCAAGATCAGTTTTTGACATGAATTTCATTAGCTGTGAAGTCAATATGCCATGGAATGCGATGATTTGTGGATATTCACTGTGTGGTTACAGCGAACAAGCGTTGGAACTTTTTGTGAGAATGTGCAGAAACAATGTACAACCAGACCTTTACACTTATTGCAGTGTGTTCAATGCAATAGCTGCATTAAAATTCTTGCATTTGGGTAAGGAAATTCATGCTATGGTTTTAAAGTCTGGGGCAGAAATGAAGGGAACAAGTGTTTCCAATGCAATTGCTGATGCATATGCCAAATGTGGCTTACTTGAAGATGTACAGAAGGTTTTTGACAGAACAGAAGAGAGAGATATAGTGTCGTGGACGACTTTGGTGACTGCTTATTCTCAATGTTCTGAGTGGGAGGATGCGCTGACAATCTTCTCAAAGATGAGGGATGAAGGATTTACACCAAATCAGTTCACTCTCTCTAGTGTACTTGTTGCATGTGCCAGCCTTTGTTCACTTGAGTATGGTCAGCAAGTCCATGGCCTCCTGTGCAAGGCTGGCTTGGACACAGGCAAGTGCACTGAAAGCGCTCTTGTTGATATGTACGCCAAATGTGGTAATATAACTGAGGCGCAGGAGGTCTTTGAGAGGATTACTGACCCCGATACAATTTCATGGACTGCCATTATATCAGCCTATGCTCAACATGGTCTTGTGGAGGATGCCCTTGAACTCTATGGTAGAATGGAGCAGTCGGGTGTGAAGGTCAATGATGTTACCTTATTGTGTGTTCTCTTTGCGTGCAGCCACAGAGGTATGGTAGAAGAAGGTCTCCATCATTTCAGTTTGATGGAACAATCTTGTGATCTGGTGCCGAAGATGGAACATTACGCTTGTATTGTTGATCTCTTAGGCCGCGTGGGCCGTCTTAATGATGCAATGGACTTCATCAAAAGGATGCCAATTGAGCCCAACGAAATGGTTTGGCAGGCTTTGTTGGCAGCATGTAGGGTCCATGAAAATGCGGAGTTGGGGGAGATTGCAGCTGAGAAGATCCTTTCCATTAGGCCAGAACACTCAGCTACCTATGTTCTTCTATCCAACACATATATCAGGACAGGGAGTTATGAAGATGGACTTAGTTTGAGAGATGCGATGAAAGACCGCGGTGTCAAGAAGGAACCAGGATGTAGTTGGATTTCTGTGAAAGGTAGAGTCCACAAATTTTATGCAGGAGATCAACAACATTCAGAAAAACATGACATATATGCAATCTTAGAAGAGCTAAGAGTGAAGATTAAGTCCTTGGGTTACATCCCGGACTTGAATTATGTATTGCAAGATCCACATCTAGCATTAAATACAGTAATGCCGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2

Protein Analysis

788

Amino Acids

87.62

Weight (kDa)

5.74

Isoelectric Point (pI)

36.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 143 - 190 3.1e-07 PPR repeat family
PPR PF01535 146 - 176 1e-05 PPR repeat
PPR_2 PF13041 246 - 284 2.3e-07 PPR repeat family
PPR PF01535 247 - 277 2e-06 PPR repeat
PPR_2 PF13041 352 - 394 4.4e-10 PPR repeat family
PPR_2 PF13041 449 - 497 4e-10 PPR repeat family
PPR PF01535 452 - 482 3.8e-06 PPR repeat
PPR_2 PF13041 550 - 597 6.1e-10 PPR repeat family
PPR PF01535 553 - 583 2.1e-08 PPR repeat
E_motif PF20431 668 - 729 2.6e-16 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017394)

Species Orthologous Gene IDs
malus_domestica MD07G1229500.v1.1
prunus_persica Prupe.2G259700_v2.0.a1
pyrus_communis pycom07g20760
rosa_laevigata RLG00000026956
rosa_multiflora Rmu_sc0000809.1_g000018
rosa_roxburghii Rroxscaffold_4G00285630
rosa_rugosa Rorug01G0364300 Rorug01G0364400
rosa_samantha Rh1AG374700 Rh1BG338100 Rh1CG351400 Rh1DG369100
rosa_wichuraiana Rw1G032960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 2156
AccB1I GGYRCC 1 cut(s) 1858
AccI GTMKAC 1 cut(s) 845
AccII CGCG 2 cut(s) 1905, 2154
AciI CCGC 5 cut(s) 552, 1903, 2012, 2152, 2154
AclWI GGATC 2 cut(s) 2035, 2324
AcsI RAATTY 5 cut(s) 539, 1024, 1193, 1215, 2210
AcuI CTGAAG 1 cut(s) 26
AdeI CACNNNGTG 1 cut(s) 1085
AfaI GTAC 6 cut(s) 466, 977, 1140, 1317, 1476, 1592
AfeI AGCGCT 1 cut(s) 1576
AfiI CCNNNNNNNGG 1 cut(s) 1540
AflIII ACRYGT 2 cut(s) 566, 669
AhdI GACNNNNNGTC 1 cut(s) 271
AjnI CCWGG 2 cut(s) 743, 2170
AleI CACNNNNGTG 1 cut(s) 915
Alw21I GWGCWC 1 cut(s) 1568
Alw26I GTCTC 2 cut(s) 745, 1823
Alw44I GTGCAC 1 cut(s) 1564
AlwI GGATC 2 cut(s) 2035, 2324
AlwNI CAGNNNCTG 1 cut(s) 200
Aor51HI AGCGCT 1 cut(s) 1576
AoxI GGCC 6 cut(s) 45, 328, 1528, 1900, 1909, 2054
ApaLI GTGCAC 1 cut(s) 1564
ApeKI GCWGC 4 cut(s) 1184, 1791, 1988, 2030
ApoI RAATTY 5 cut(s) 539, 1024, 1193, 1215, 2210
AspLEI GCGC 4 cut(s) 6, 1411, 1577, 1621
AspS9I GGNCC 3 cut(s) 328, 1909, 1999
AsuC2I CCSGG 1 cut(s) 2306
AsuHPI GGTGA 3 cut(s) 526, 896, 1384
AsuII TTCGAA 1 cut(s) 374
AvaII GGWCC 1 cut(s) 1999
BaeGI GKGCMC 1 cut(s) 1568
BanI GGYRCC 1 cut(s) 1858
BanII GRGCYC 1 cut(s) 1959
Bbv12I GWGCWC 1 cut(s) 1568
BbvI GCAGC 4 cut(s) 1171, 1803, 2000, 2042
BceAI ACGGC 2 cut(s) 975, 1896
BcgI CGANNNNNNTGC 2 cut(s) 741, 775
BciT130I CCWGG 2 cut(s) 745, 2172
BclI TGATCA 1 cut(s) 799
BcnI CCSGG 1 cut(s) 2306
BcoDI GTCTC 2 cut(s) 745, 1823
BfaI CTAG 5 cut(s) 578, 881, 942, 1470, 2339
BfoI RGCGCY 1 cut(s) 1578
BglI GCCNNNNNGGC 1 cut(s) 1908
BisI GCNGC 5 cut(s) 1185, 1792, 1903, 1989, 2031
BlsI GCNGC 5 cut(s) 1186, 1793, 1904, 1990, 2032
Bme1390I CCNGG 3 cut(s) 745, 2172, 2306
Bme18I GGWCC 1 cut(s) 1999
BmeRI GACNNNNNGTC 1 cut(s) 271
BmgT120I GGNCC 3 cut(s) 328, 1909, 1999
BmiI GGNNCC 3 cut(s) 1860, 2000, 2169
BmrFI CCNGG 3 cut(s) 745, 2172, 2306
BmsI GCATC 8 cut(s) 929, 991, 1273, 1396, 1699, 1912, 1935, 2128
Bpu14I TTCGAA 1 cut(s) 374
BpuEI CTTGAG 1 cut(s) 1526
BpuMI CCSGG 1 cut(s) 2306
BsaAI YACGTR 1 cut(s) 254
BsaBI GATNNNNATC 1 cut(s) 2334
BsaI GGTCTC 1 cut(s) 1823
BsaJI CCNNGG 4 cut(s) 1052, 1525, 2152, 2292
Bsc4I CCNNNNNNNGG 1 cut(s) 1540
Bse3DI GCAATG 2 cut(s) 759, 1932
Bse8I GATNNNNATC 1 cut(s) 2334
BseBI CCWGG 2 cut(s) 745, 2172
BseDI CCNNGG 4 cut(s) 1052, 1525, 2152, 2292
BseGI GGATG 9 cut(s) 149, 714, 1006, 1411, 1441, 1714, 1950, 2180, 2301
BseJI GATNNNNATC 1 cut(s) 2334
BseLI CCNNNNNNNGG 1 cut(s) 1540
BseMI GCAATG 2 cut(s) 759, 1932
BseMII CTCAG 8 cut(s) 202, 414, 459, 823, 1386, 1605, 2025, 2079
BseSI GKGCMC 1 cut(s) 1568
BseXI GCAGC 4 cut(s) 1171, 1803, 2000, 2042
BseYI CCCAGC 1 cut(s) 213
BsgI GTGCAG 2 cut(s) 1147, 1810
Bsh1236I CGCG 2 cut(s) 1905, 2154
BshFI GGCC 6 cut(s) 47, 330, 1530, 1902, 1911, 2056
BshNI GGYRCC 1 cut(s) 1858
BsiHKAI GWGCWC 1 cut(s) 1568
BsiSI CCGG 2 cut(s) 2306, 2360
BslI CCNNNNNNNGG 1 cut(s) 1540
BsmAI GTCTC 2 cut(s) 745, 1823
BsmI GAATGC 2 cut(s) 754, 1063
BsnI GGCC 6 cut(s) 47, 330, 1530, 1902, 1911, 2056
Bso31I GGTCTC 1 cut(s) 1823
Bsp119I TTCGAA 1 cut(s) 374
Bsp1286I GDGCHC 2 cut(s) 1568, 1959
Bsp1407I TGTACA 2 cut(s) 1138, 1315
Bsp143I GATC 7 cut(s) 799, 1007, 1852, 1891, 2040, 2224, 2329
Bsp19I CCATGG 2 cut(s) 1052, 1525
BspACI CCGC 5 cut(s) 552, 1903, 2012, 2152, 2154
BspANI GGCC 6 cut(s) 47, 330, 1530, 1902, 1911, 2056
BspCNI CTCAG 8 cut(s) 201, 415, 460, 822, 1387, 1606, 2026, 2078
BspFNI CGCG 2 cut(s) 1905, 2154
BspHI TCATGA 1 cut(s) 450
BspLI GGNNCC 3 cut(s) 1860, 2000, 2169
BspPI GGATC 2 cut(s) 2035, 2324
BspQI GCTCTTC 1 cut(s) 2262
BspT104I TTCGAA 1 cut(s) 374
BspT107I GGYRCC 1 cut(s) 1858
BspTNI GGTCTC 1 cut(s) 1823
BsrDI GCAATG 2 cut(s) 759, 1932
BsrGI TGTACA 2 cut(s) 1138, 1315
BssECI CCNNGG 4 cut(s) 1052, 1525, 2152, 2292
BssMI GATC 7 cut(s) 799, 1007, 1852, 1891, 2040, 2224, 2329
BssNAI GTATAC 1 cut(s) 846
BssT1I CCWWGG 3 cut(s) 1052, 1525, 2292
Bst1107I GTATAC 1 cut(s) 846
Bst2UI CCWGG 2 cut(s) 745, 2172
Bst4CI ACNGT 6 cut(s) 61, 69, 448, 914, 1083, 2353
Bst6I CTCTTC 3 cut(s) 812, 1335, 2262
BstAPI GCANNNNNTGC 1 cut(s) 1184
BstAUI TGTACA 2 cut(s) 1138, 1315
BstBAI YACGTR 1 cut(s) 254
BstBI TTCGAA 1 cut(s) 374
BstC8I GCNNGC 5 cut(s) 609, 1492, 1546, 1789, 1977
BstDSI CCRYGG 3 cut(s) 1052, 1525, 2152
BstENI CCTNNNNNAGG 1 cut(s) 1538
BstF5I GGATG 9 cut(s) 149, 714, 1006, 1411, 1441, 1714, 1950, 2180, 2301
BstFNI CGCG 2 cut(s) 1905, 2154
BstH2I RGCGCY 1 cut(s) 1578
BstHHI GCGC 4 cut(s) 6, 1411, 1577, 1621
BstKTI GATC 7 cut(s) 802, 1010, 1855, 1894, 2043, 2227, 2332
BstMAI GTCTC 2 cut(s) 745, 1823
BstMBI GATC 7 cut(s) 799, 1007, 1852, 1891, 2040, 2224, 2329
BstMWI GCNNNNNNNGC 8 cut(s) 203, 1184, 1536, 1545, 1572, 1908, 1954, 1985
BstNI CCWGG 2 cut(s) 745, 2172
BstNSI RCATGY 5 cut(s) 570, 611, 673, 1488, 1995
BstSCI CCNGG 3 cut(s) 743, 2170, 2304
BstSLI GKGCMC 1 cut(s) 1568
BstUI CGCG 2 cut(s) 1905, 2154
BstV1I GCAGC 4 cut(s) 1171, 1803, 2000, 2042
BstX2I RGATCY 2 cut(s) 2040, 2329
BstXI CCANNNNNNTGG 1 cut(s) 1966
BstYI RGATCY 2 cut(s) 2040, 2329
BstZ17I GTATAC 1 cut(s) 846
BsuRI GGCC 6 cut(s) 47, 330, 1530, 1902, 1911, 2056
BtgI CCRYGG 3 cut(s) 1052, 1525, 2152
BtgZI GCGATG 2 cut(s) 1076, 2156
BtsCI GGATG 9 cut(s) 149, 714, 1006, 1411, 1441, 1714, 1950, 2180, 2301
BtsI GCAGTG 1 cut(s) 1171
BtsIMutI CAGTG 4 cut(s) 862, 1079, 1171, 1566
Cac8I GCNNGC 5 cut(s) 609, 1492, 1546, 1789, 1977
CaiI CAGNNNCTG 1 cut(s) 200
CciI TCATGA 1 cut(s) 450
CfoI GCGC 4 cut(s) 6, 1411, 1577, 1621
Cfr13I GGNCC 3 cut(s) 328, 1909, 1999
Cfr42I CCGCGG 1 cut(s) 2155
CseI GACGC 1 cut(s) 297
Csp6I GTAC 6 cut(s) 465, 976, 1139, 1316, 1475, 1591
CviQI GTAC 6 cut(s) 465, 976, 1139, 1316, 1475, 1591
DpnI GATC 7 cut(s) 801, 1009, 1854, 1893, 2042, 2226, 2331
DpnII GATC 7 cut(s) 799, 1007, 1852, 1891, 2040, 2224, 2329
DraI TTTAAA 1 cut(s) 1233
DraIII CACNNNGTG 1 cut(s) 1085
DrdI GACNNNNNNGTC 1 cut(s) 2156
DriI GACNNNNNGTC 1 cut(s) 271
DseDI GACNNNNNNGTC 1 cut(s) 2156
Eam1104I CTCTTC 3 cut(s) 812, 1335, 2262
Eam1105I GACNNNNNGTC 1 cut(s) 271
EarI CTCTTC 3 cut(s) 812, 1335, 2262
Eco130I CCWWGG 3 cut(s) 1052, 1525, 2292
Eco24I GRGCYC 1 cut(s) 1959
Eco31I GGTCTC 1 cut(s) 1823
Eco47I GGWCC 1 cut(s) 1999
Eco47III AGCGCT 1 cut(s) 1576
Eco57I CTGAAG 1 cut(s) 26
EcoNI CCTNNNNNAGG 1 cut(s) 1538
EcoRII CCWGG 2 cut(s) 743, 2170
EcoT14I CCWWGG 3 cut(s) 1052, 1525, 2292
EcoT22I ATGCAT 1 cut(s) 1288
EcoT38I GRGCYC 1 cut(s) 1959
ErhI CCWWGG 3 cut(s) 1052, 1525, 2292
FalI AAGNNNNNCTT 4 cut(s) 1532, 1564, 2109, 2141
FauNDI CATATG 2 cut(s) 786, 1288
FbaI TGATCA 1 cut(s) 799
FblI GTMKAC 1 cut(s) 845
Fnu4HI GCNGC 5 cut(s) 1185, 1792, 1903, 1989, 2031
FokI GGATG 9 cut(s) 136, 721, 1013, 1418, 1448, 1721, 1957, 2187, 2288
FriOI GRGCYC 1 cut(s) 1959
Fsp4HI GCNGC 5 cut(s) 1185, 1792, 1903, 1989, 2031
FspBI CTAG 5 cut(s) 578, 881, 942, 1470, 2339
GlaI GCGC 4 cut(s) 5, 1410, 1576, 1620
GluI GCNGC 5 cut(s) 1185, 1792, 1903, 1989, 2031
GsaI CCCAGC 1 cut(s) 217
HaeII RGCGCY 1 cut(s) 1578
HaeIII GGCC 6 cut(s) 47, 330, 1530, 1902, 1911, 2056
HapII CCGG 2 cut(s) 2306, 2360
HgaI GACGC 1 cut(s) 297
HhaI GCGC 4 cut(s) 6, 1411, 1577, 1621
Hin6I GCGC 4 cut(s) 4, 1409, 1575, 1619
HinP1I GCGC 4 cut(s) 4, 1409, 1575, 1619
HincII GTYRAC 1 cut(s) 768
HindII GTYRAC 1 cut(s) 768
HinfI GANTC 4 cut(s) 52, 698, 938, 2202
HpaI GTTAAC 1 cut(s) 768
HpaII CCGG 2 cut(s) 2306, 2360
HphI GGTGA 3 cut(s) 526, 896, 1384
Hpy188I TCNGA 8 cut(s) 226, 385, 424, 535, 925, 1000, 1396, 2239
Hpy188III TCNNGA 5 cut(s) 451, 562, 578, 2101, 2161
HpyAV CCTTC 7 cut(s) 50, 1246, 1315, 1433, 1744, 1808, 2158
HpyCH4III ACNGT 6 cut(s) 61, 69, 448, 914, 1083, 2353
HpyCH4IV ACGT 1 cut(s) 253
HpyF10VI GCNNNNNNNGC 8 cut(s) 203, 1184, 1536, 1545, 1572, 1908, 1954, 1985
HpySE526I ACGT 1 cut(s) 253
HspAI GCGC 4 cut(s) 4, 1409, 1575, 1619
Ksp22I TGATCA 1 cut(s) 799
KspAI GTTAAC 1 cut(s) 768
KspI CCGCGG 1 cut(s) 2155
Kzo9I GATC 7 cut(s) 799, 1007, 1852, 1891, 2040, 2224, 2329
LguI GCTCTTC 1 cut(s) 2262
LmnI GCTCC 2 cut(s) 202, 1735
Lsp1109I GCAGC 4 cut(s) 1171, 1803, 2000, 2042
LweI GCATC 8 cut(s) 929, 991, 1273, 1396, 1699, 1912, 1935, 2128
MaeI CTAG 5 cut(s) 578, 881, 942, 1470, 2339
MaeII ACGT 1 cut(s) 253
MaeIII GTNAC 5 cut(s) 890, 1088, 1372, 1762, 2297
MalI GATC 7 cut(s) 801, 1009, 1854, 1893, 2042, 2226, 2331
MboI GATC 7 cut(s) 799, 1007, 1852, 1891, 2040, 2224, 2329
MfeI CAATTG 2 cut(s) 1275, 1950
MflI RGATCY 2 cut(s) 2040, 2329
MhlI GDGCHC 2 cut(s) 1568, 1959
MlyI GAGTC 3 cut(s) 61, 947, 2211
MmeI TCCRAC 4 cut(s) 978, 1086, 2112, 2162
Mph1103I ATGCAT 1 cut(s) 1288
MseI TTAA 9 cut(s) 171, 666, 714, 767, 1190, 1232, 1917, 2286, 2345
MslI CAYNNNNRTG 3 cut(s) 915, 971, 2007
MspA1I CMGCKG 2 cut(s) 2033, 2154
MspI CCGG 2 cut(s) 2306, 2360
MspR9I CCNGG 3 cut(s) 745, 2172, 2306
MunI CAATTG 2 cut(s) 1275, 1950
Mva1269I GAATGC 2 cut(s) 754, 1063
MvaI CCWGG 2 cut(s) 745, 2172
MvnI CGCG 2 cut(s) 1905, 2154
MwoI GCNNNNNNNGC 8 cut(s) 203, 1184, 1536, 1545, 1572, 1908, 1954, 1985
NciI CCSGG 1 cut(s) 2306
NcoI CCATGG 2 cut(s) 1052, 1525
NdeI CATATG 2 cut(s) 786, 1288
NdeII GATC 7 cut(s) 799, 1007, 1852, 1891, 2040, 2224, 2329
NlaIV GGNNCC 3 cut(s) 1860, 2000, 2169
NmuCI GTSAC 1 cut(s) 1372
NsiI ATGCAT 1 cut(s) 1288
NspI RCATGY 5 cut(s) 570, 611, 673, 1488, 1995
NspV TTCGAA 1 cut(s) 374
OliI CACNNNNGTG 1 cut(s) 915
PaeI GCATGC 1 cut(s) 611
PagI TCATGA 1 cut(s) 450
PciI ACATGT 2 cut(s) 566, 669
PciSI GCTCTTC 1 cut(s) 2262
PctI GAATGC 2 cut(s) 754, 1063
PfeI GAWTC 1 cut(s) 698
PfoI TCCNGGA 2 cut(s) 743, 2304
PkrI GCNGC 5 cut(s) 1186, 1793, 1904, 1990, 2032
PleI GAGTC 3 cut(s) 60, 946, 2210
PpsI GAGTC 3 cut(s) 60, 946, 2210
Ppu21I YACGTR 1 cut(s) 254
PscI ACATGT 2 cut(s) 566, 669
Psp6I CCWGG 2 cut(s) 743, 2170
PspFI CCCAGC 1 cut(s) 213
PspGI CCWGG 2 cut(s) 743, 2170
PspN4I GGNNCC 3 cut(s) 1860, 2000, 2169
PspPI GGNCC 3 cut(s) 328, 1909, 1999
PsrI GAACNNNNNNTAC 2 cut(s) 279, 311
PstNI CAGNNNCTG 1 cut(s) 200
PsuI RGATCY 2 cut(s) 2040, 2329
PvuII CAGCTG 1 cut(s) 2033
RsaI GTAC 6 cut(s) 466, 977, 1140, 1317, 1476, 1592
RsaNI GTAC 6 cut(s) 465, 976, 1139, 1316, 1475, 1591
RseI CAYNNNNRTG 3 cut(s) 915, 971, 2007
SacII CCGCGG 1 cut(s) 2155
SapI GCTCTTC 1 cut(s) 2262
SaqAI TTAA 9 cut(s) 171, 666, 714, 767, 1190, 1232, 1917, 2286, 2345
SatI GCNGC 5 cut(s) 1185, 1792, 1903, 1989, 2031
Sau3AI GATC 7 cut(s) 799, 1007, 1852, 1891, 2040, 2224, 2329
Sau96I GGNCC 3 cut(s) 328, 1909, 1999
SchI GAGTC 3 cut(s) 61, 947, 2211
ScrFI CCNGG 3 cut(s) 745, 2172, 2306
SduI GDGCHC 2 cut(s) 1568, 1959
SfaNI GCATC 8 cut(s) 929, 991, 1273, 1396, 1699, 1912, 1935, 2128
SfiI GGCCNNNNNGGCC 1 cut(s) 1908
Sfr303I CCGCGG 1 cut(s) 2155
SfuI TTCGAA 1 cut(s) 374
SgrBI CCGCGG 1 cut(s) 2155
SinI GGWCC 1 cut(s) 1999
SmiMI CAYNNNNRTG 3 cut(s) 915, 971, 2007
SmlI CTYRAG 1 cut(s) 1505
SmoI CTYRAG 1 cut(s) 1505
SphI GCATGC 1 cut(s) 611
SsiI CCGC 5 cut(s) 552, 1903, 2012, 2152, 2154
SspMI CTAG 5 cut(s) 578, 881, 942, 1470, 2339
StyD4I CCNGG 3 cut(s) 743, 2170, 2304
StyI CCWWGG 3 cut(s) 1052, 1525, 2292
TaaI ACNGT 6 cut(s) 61, 69, 448, 914, 1083, 2353
TaiI ACGT 1 cut(s) 256
TaqI TCGA 2 cut(s) 374, 773
TatI WGTACW 5 cut(s) 464, 975, 1138, 1315, 1474
TauI GCSGC 1 cut(s) 1905
TfiI GAWTC 1 cut(s) 698
Tru1I TTAA 9 cut(s) 171, 666, 714, 767, 1190, 1232, 1917, 2286, 2345
Tru9I TTAA 9 cut(s) 171, 666, 714, 767, 1190, 1232, 1917, 2286, 2345
TscAI CASTG 4 cut(s) 862, 1086, 1171, 1573
TseFI GTSAC 1 cut(s) 1372
TseI GCWGC 4 cut(s) 1184, 1791, 1988, 2030
Tsp45I GTSAC 1 cut(s) 1372
TspRI CASTG 4 cut(s) 862, 1086, 1171, 1573
VneI GTGCAC 1 cut(s) 1564
VpaK11BI GGWCC 1 cut(s) 1999
XagI CCTNNNNNAGG 1 cut(s) 1538
XapI RAATTY 5 cut(s) 539, 1024, 1193, 1215, 2210
XbaI TCTAGA 1 cut(s) 577
XceI RCATGY 5 cut(s) 570, 611, 673, 1488, 1995
XcmI CCANNNNNNNNNTGG 2 cut(s) 569, 2178
XmiI GTMKAC 1 cut(s) 845
XspI CTAG 5 cut(s) 578, 881, 942, 1470, 2339
Zsp2I ATGCAT 1 cut(s) 1288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.