MD07G1250900.v1.1

No description available

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
Physical Location & Seq
Reverse (-)
31928396 .. 31928839
444 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1250900.v1.1.491

Sequence Viewer

Length: 354 bp
ATGAAGCCCCAACGGGCCTTTGGATCAACAACATCAACAAATCCACACATCTATTCTTCAAGATCAAGCCCAAAAGCCCTTGAAAATTCAAACCATCCGTTCATCCTAAGATCAAGCCCTGACGGCCTTTTGGATCAACAACCCATCAACAAATCTACACAACTGTTCATCCAAGATCAAGCCTCGACGACCCTTGGATCAACAACATCCACAGACCAACATCTTACGGAGATCGAATCAGAGGATCAAATTAGAGATCGTAACCCCAAAAAATCAAAATCACAAAATATTATTTGTACACGTGTTCTTGTTTCAAGAAATTTCCGTGTTCACAGAGTCATTGCTTTAATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

13.16

Weight (kDa)

9.89

Isoelectric Point (pI)

66.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 4 cut(s) 31, 141, 205, 252
AcsI RAATTY 2 cut(s) 85, 319
AcvI CACGTG 1 cut(s) 302
AfaI GTAC 1 cut(s) 298
AflIII ACRYGT 2 cut(s) 299, 301
AgsI TTSAA 4 cut(s) 60, 83, 90, 315
AlwI GGATC 4 cut(s) 31, 141, 205, 252
AoxI GGCC 2 cut(s) 15, 124
ApoI RAATTY 2 cut(s) 85, 319
AspS9I GGNCC 1 cut(s) 15
BbrPI CACGTG 1 cut(s) 302
BccI CCATC 2 cut(s) 102, 152
BceAI ACGGC 1 cut(s) 139
BglI GCCNNNNNGGC 1 cut(s) 123
BmgT120I GGNCC 1 cut(s) 15
BsaAI YACGTR 1 cut(s) 302
BsaJI CCNNGG 1 cut(s) 193
Bse3DI GCAATG 1 cut(s) 339
BseDI CCNNGG 1 cut(s) 193
BseGI GGATG 4 cut(s) 94, 102, 168, 206
BseMI GCAATG 1 cut(s) 339
BshFI GGCC 2 cut(s) 17, 126
BsnI GGCC 2 cut(s) 17, 126
Bsp1407I TGTACA 1 cut(s) 296
Bsp143I GATC 9 cut(s) 23, 62, 110, 133, 175, 197, 231, 244, 256
BspANI GGCC 2 cut(s) 17, 126
BspPI GGATC 4 cut(s) 31, 141, 205, 252
BsrDI GCAATG 1 cut(s) 339
BsrGI TGTACA 1 cut(s) 296
BssECI CCNNGG 1 cut(s) 193
BssMI GATC 9 cut(s) 23, 62, 110, 133, 175, 197, 231, 244, 256
BssT1I CCWWGG 1 cut(s) 193
Bst4CI ACNGT 1 cut(s) 165
BstAUI TGTACA 1 cut(s) 296
BstBAI YACGTR 1 cut(s) 302
BstDEI CTNAG 1 cut(s) 107
BstF5I GGATG 4 cut(s) 94, 102, 168, 206
BstKTI GATC 9 cut(s) 26, 65, 113, 136, 178, 200, 234, 247, 259
BstMBI GATC 9 cut(s) 23, 62, 110, 133, 175, 197, 231, 244, 256
BstMWI GCNNNNNNNGC 1 cut(s) 123
BsuRI GGCC 2 cut(s) 17, 126
BtsCI GGATG 4 cut(s) 94, 102, 168, 206
Cfr13I GGNCC 1 cut(s) 15
Csp6I GTAC 1 cut(s) 297
CviJI RGCY 7 cut(s) 7, 17, 69, 77, 117, 126, 182
CviKI_1 RGCY 7 cut(s) 7, 17, 69, 77, 117, 126, 182
CviQI GTAC 1 cut(s) 297
DdeI CTNAG 1 cut(s) 107
DpnI GATC 9 cut(s) 25, 64, 112, 135, 177, 199, 233, 246, 258
DpnII GATC 9 cut(s) 23, 62, 110, 133, 175, 197, 231, 244, 256
Eco130I CCWWGG 1 cut(s) 193
Eco72I CACGTG 1 cut(s) 302
EcoT14I CCWWGG 1 cut(s) 193
ErhI CCWWGG 1 cut(s) 193
FokI GGATG 4 cut(s) 81, 89, 155, 193
HaeIII GGCC 2 cut(s) 17, 126
HinfI GANTC 2 cut(s) 236, 336
Hpy166II GTNNAC 2 cut(s) 299, 331
Hpy188I TCNGA 1 cut(s) 241
Hpy188III TCNNGA 2 cut(s) 60, 315
Hpy8I GTNNAC 2 cut(s) 299, 331
Hpy99I CGWCG 1 cut(s) 190
HpyCH4III ACNGT 1 cut(s) 165
HpyCH4IV ACGT 1 cut(s) 301
HpyF10VI GCNNNNNNNGC 1 cut(s) 123
HpyF3I CTNAG 1 cut(s) 107
HpySE526I ACGT 1 cut(s) 301
Kzo9I GATC 9 cut(s) 23, 62, 110, 133, 175, 197, 231, 244, 256
LpnPI CCDG 1 cut(s) 132
MaeII ACGT 1 cut(s) 301
MaeIII GTNAC 1 cut(s) 260
MalI GATC 9 cut(s) 25, 64, 112, 135, 177, 199, 233, 246, 258
MboI GATC 9 cut(s) 23, 62, 110, 133, 175, 197, 231, 244, 256
MboII GAAGA 1 cut(s) 48
MluCI AATT 4 cut(s) 85, 249, 319, 348
MlyI GAGTC 1 cut(s) 345
MnlI CCTC 2 cut(s) 193, 235
MseI TTAA 1 cut(s) 347
MwoI GCNNNNNNNGC 1 cut(s) 123
NdeII GATC 9 cut(s) 23, 62, 110, 133, 175, 197, 231, 244, 256
PfeI GAWTC 1 cut(s) 236
PleI GAGTC 1 cut(s) 344
PmaCI CACGTG 1 cut(s) 302
PmlI CACGTG 1 cut(s) 302
PpsI GAGTC 1 cut(s) 344
Ppu21I YACGTR 1 cut(s) 302
PspCI CACGTG 1 cut(s) 302
PspPI GGNCC 1 cut(s) 15
RsaI GTAC 1 cut(s) 298
RsaNI GTAC 1 cut(s) 297
SaqAI TTAA 1 cut(s) 347
Sau3AI GATC 9 cut(s) 23, 62, 110, 133, 175, 197, 231, 244, 256
Sau96I GGNCC 1 cut(s) 15
SchI GAGTC 1 cut(s) 345
SetI ASST 1 cut(s) 304
Sse9I AATT 4 cut(s) 85, 249, 319, 348
SspI AATATT 1 cut(s) 289
StyI CCWWGG 1 cut(s) 193
TaaI ACNGT 1 cut(s) 165
TaiI ACGT 1 cut(s) 304
TaqI TCGA 2 cut(s) 185, 234
TasI AATT 4 cut(s) 85, 249, 319, 348
TatI WGTACW 1 cut(s) 296
TfiI GAWTC 1 cut(s) 236
Tru1I TTAA 1 cut(s) 347
Tru9I TTAA 1 cut(s) 347
TspDTI ATGAA 3 cut(s) 17, 91, 157
TspGWI ACGGA 3 cut(s) 87, 242, 314
XapI RAATTY 2 cut(s) 85, 319
XcmI CCANNNNNNNNNTGG 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.