pycom10g11040

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
Physical Location & Seq
Forward (+)
14561880 .. 14571444
9565 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g11040.5

Sequence Viewer

Length: 540 bp
ATGTATTCATCTGATTATTTAAATCCAAAAATCAAGTTTTGGAATTCTATAAATAGGAAGCCAAGCAAATCCCGAAGGATCGAGAAAACACTCTTCGTTCTTCGTCAAATCCTCCTTCAAGGTCAAGCCCCAGCGGCCCTTGAAGAACTTCCACCGACTCAAGATCAACCCCGACGGCCCTTGAAGAAAGTGTTCATCGTTCATCATCCGTTCATCCTAAGATCAAGCCCCAACGGCCCTTTGGATCAACAACCTCAACAAATCCACACATCCAATCGTTCTTCAAGATTAAGCCCAAAAGCCCTTGAAGATCCGCTCATCCATCAACCTTCAAGATCAACCCAAAAGCCCTTGAAGAAATCCACACAACCATTATTCAAGATCAAGCCCCGACGGCCCTTGAAGAAAGTGTTCATCGTTCATCATCCGTTCATTCAAGATCAAGCCCAAAAGCCCTTGAAGAAATCCACACAACCATTATTCAAGATCAAGCCCCGACGGCCCTTGAAGAAAGTCCGTTCATCAACTGTTCATCCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

180

Amino Acids

20.86

Weight (kDa)

11.52

Isoelectric Point (pI)

67.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 316
AciI CCGC 2 cut(s) 134, 314
AclWI GGATC 3 cut(s) 86, 252, 305
AcsI RAATTY 1 cut(s) 43
AlwI GGATC 3 cut(s) 86, 252, 305
AoxI GGCC 5 cut(s) 135, 176, 235, 395, 500
ApoI RAATTY 1 cut(s) 43
Asp700I GAANNNNTTC 3 cut(s) 147, 191, 410
AspS9I GGNCC 5 cut(s) 136, 177, 236, 396, 501
BccI CCATC 1 cut(s) 330
BceAI ACGGC 4 cut(s) 191, 250, 410, 515
BfaI CTAG 1 cut(s) 538
BglI GCCNNNNNGGC 4 cut(s) 134, 234, 394, 499
BisI GCNGC 1 cut(s) 135
BlsI GCNGC 1 cut(s) 136
BmgT120I GGNCC 5 cut(s) 136, 177, 236, 396, 501
BpuEI CTTGAG 1 cut(s) 144
BseGI GGATG 6 cut(s) 205, 213, 269, 318, 424, 532
BseYI CCCAGC 1 cut(s) 130
BshFI GGCC 5 cut(s) 137, 178, 237, 397, 502
BsnI GGCC 5 cut(s) 137, 178, 237, 397, 502
Bsp143I GATC 9 cut(s) 78, 163, 221, 244, 310, 335, 381, 439, 486
BspACI CCGC 2 cut(s) 134, 314
BspANI GGCC 5 cut(s) 137, 178, 237, 397, 502
BspPI GGATC 3 cut(s) 86, 252, 305
BsrBI CCGCTC 1 cut(s) 316
BssMI GATC 9 cut(s) 78, 163, 221, 244, 310, 335, 381, 439, 486
Bst4CI ACNGT 1 cut(s) 529
Bst6I CTCTTC 1 cut(s) 98
BstDEI CTNAG 1 cut(s) 218
BstF5I GGATG 6 cut(s) 205, 213, 269, 318, 424, 532
BstKTI GATC 9 cut(s) 81, 166, 224, 247, 313, 338, 384, 442, 489
BstMBI GATC 9 cut(s) 78, 163, 221, 244, 310, 335, 381, 439, 486
BstMWI GCNNNNNNNGC 4 cut(s) 134, 234, 394, 499
BstX2I RGATCY 1 cut(s) 310
BstYI RGATCY 1 cut(s) 310
BsuRI GGCC 5 cut(s) 137, 178, 237, 397, 502
BtsCI GGATG 6 cut(s) 205, 213, 269, 318, 424, 532
Cfr13I GGNCC 5 cut(s) 136, 177, 236, 396, 501
DdeI CTNAG 1 cut(s) 218
DpnI GATC 9 cut(s) 80, 165, 223, 246, 312, 337, 383, 441, 488
DpnII GATC 9 cut(s) 78, 163, 221, 244, 310, 335, 381, 439, 486
DraI TTTAAA 1 cut(s) 21
Eam1104I CTCTTC 1 cut(s) 98
EarI CTCTTC 1 cut(s) 98
EcoRI GAATTC 1 cut(s) 43
FaiI YATR 1 cut(s) 50
Fnu4HI GCNGC 1 cut(s) 135
FokI GGATG 6 cut(s) 192, 200, 256, 305, 411, 519
Fsp4HI GCNGC 1 cut(s) 135
FspBI CTAG 1 cut(s) 538
GluI GCNGC 1 cut(s) 135
GsaI CCCAGC 1 cut(s) 134
HaeIII GGCC 5 cut(s) 137, 178, 237, 397, 502
HinfI GANTC 1 cut(s) 157
Hpy188I TCNGA 1 cut(s) 13
Hpy188III TCNNGA 8 cut(s) 72, 82, 161, 285, 333, 379, 437, 484
Hpy99I CGWCG 3 cut(s) 177, 396, 501
HpyAV CCTTC 3 cut(s) 69, 125, 339
HpyCH4III ACNGT 1 cut(s) 529
HpyF10VI GCNNNNNNNGC 4 cut(s) 134, 234, 394, 499
HpyF3I CTNAG 1 cut(s) 218
Kzo9I GATC 9 cut(s) 78, 163, 221, 244, 310, 335, 381, 439, 486
LpnPI CCDG 1 cut(s) 144
MaeI CTAG 1 cut(s) 538
MalI GATC 9 cut(s) 80, 165, 223, 246, 312, 337, 383, 441, 488
MbiI CCGCTC 1 cut(s) 316
MboI GATC 9 cut(s) 78, 163, 221, 244, 310, 335, 381, 439, 486
MflI RGATCY 1 cut(s) 310
MluCI AATT 1 cut(s) 43
MlyI GAGTC 1 cut(s) 151
MnlI CCTC 2 cut(s) 122, 264
MroXI GAANNNNTTC 3 cut(s) 147, 191, 410
MseI TTAA 2 cut(s) 20, 290
MspA1I CMGCKG 1 cut(s) 134
MwoI GCNNNNNNNGC 4 cut(s) 134, 234, 394, 499
NdeII GATC 9 cut(s) 78, 163, 221, 244, 310, 335, 381, 439, 486
PdmI GAANNNNTTC 3 cut(s) 147, 191, 410
PkrI GCNGC 1 cut(s) 136
PleI GAGTC 1 cut(s) 151
PpsI GAGTC 1 cut(s) 151
PspFI CCCAGC 1 cut(s) 130
PspPI GGNCC 5 cut(s) 136, 177, 236, 396, 501
PsuI RGATCY 1 cut(s) 310
SaqAI TTAA 2 cut(s) 20, 290
SatI GCNGC 1 cut(s) 135
Sau3AI GATC 9 cut(s) 78, 163, 221, 244, 310, 335, 381, 439, 486
Sau96I GGNCC 5 cut(s) 136, 177, 236, 396, 501
SchI GAGTC 1 cut(s) 151
SetI ASST 3 cut(s) 124, 256, 331
SmiI ATTTAAAT 1 cut(s) 21
SmlI CTYRAG 1 cut(s) 159
SmoI CTYRAG 1 cut(s) 159
Sse9I AATT 1 cut(s) 43
SsiI CCGC 2 cut(s) 134, 314
SspMI CTAG 1 cut(s) 538
SwaI ATTTAAAT 1 cut(s) 21
TaaI ACNGT 1 cut(s) 529
TaqI TCGA 1 cut(s) 81
TasI AATT 1 cut(s) 43
TauI GCSGC 1 cut(s) 137
Tru1I TTAA 2 cut(s) 20, 290
Tru9I TTAA 2 cut(s) 20, 290
TspDTI ATGAA 8 cut(s) 184, 191, 202, 403, 410, 421, 510, 521
TspGWI ACGGA 3 cut(s) 198, 417, 506
XapI RAATTY 1 cut(s) 43
XcmI CCANNNNNNNNNTGG 1 cut(s) 238
XmnI GAANNNNTTC 3 cut(s) 147, 191, 410
XspI CTAG 1 cut(s) 538
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.