MD07G1257800.v1.1

AT-hook motif nuclear-localized protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0012862
Physical Location & Seq
Reverse (-)
32395883 .. 32399199
3317 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1257800.v1.1.491

Sequence Viewer

Length: 1029 bp
ATGCAAATGGAGGAGAAAGACAACAAGTTGGTTTCTGGTGTAGCAGTGAGCGGTGAGAACGCTCCAGATGATTACAGGATTGCCCCAAGAAATGAAAACCCTAGCCCATGTGGGGGACCCACAACGGCGGCAGCTCCGACGGCGTCGCCGATGAGCTTGACCGGGATCGGTACGGACGGAAAGAAGAAGAGGGGCAGGCCTAGGAAATACGGACCCGACAGCAAGCCCGTCCCGTCTTCGGCATTGTCCCCGATGCCGATTTCGTCGTCGATTCCGCTGACCGGAGAGTTCTCCGCCTGGAAGAGGGGCAGAGGCAAGCCCGTTGACTCGATCAAGAAGTCTCACAAGCATGACGTGTTTGGGAACTCAGGTGAGAAAATTGCATACTCGGTTGGTGCAAACTTTACACCACACATCCTTACTGTCCATTCCGGCGAGGATGTTACAATGAAGATCATGTCATTCTCTCAACAAGGAGCTCGAGCTATTTGCATACTTTCCGCAAATGGTACCATTTCAAATGTTACACTTAGGCAGGCCAGTTCTTCTGGGGGTACTTTAACGTATGAGGGCCGCTTTGAGATACTGTCCTTGTCAGGATCGTATATACCAACTGAGAATGCAGTAACAAAGAGCAGATCCGGTGGCATGAGTGTTGCTTTGGCAGGTCCAGACGGTAGAGTGGTTGGGGGTGGACTTGCTGGTATGCTGATCGCTGCTGGCCCCGTGCAGGTTGTGGTGGGCAGTTTTCTGCAAGGTCACCAGCTGGAACAGAAGCCAAAGAAGCAGAGACTCGAGCCTGTATCATCATCGATTGTCCCTATCATAGTCAATGCAGTGTCTGGTGAAGAAATGAAGGTCTATGGCGGAGTAAAGCCCATTCTGATGGCTCCTTCCTTCCACGGGGATCATTCTAATTCTCTGAATCCCGTGCACAGCTACAAGAACTCAGCTTCTGAGAGTAAATCATTGTTGTTGCAAGAGGAATCTAAAGGCTCTGGTCAAGCAAACTGTGAAGTTTCTTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF296

Protein Analysis

343

Amino Acids

35.75

Weight (kDa)

9.28

Isoelectric Point (pI)

42.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PCC PF03479 136 - 250 9.1e-27 Plants and Prokaryotes Conserved (PCC) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012862)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G62260 AT5G62260 AT5G62260
fragaria_vesca FvH4_7g28180
malus_domestica MD01G1185700.v1.1 MD07G1257800.v1.1
prunus_persica Prupe.2G282300_v2.0.a1
pyrus_communis pycom07g23090
rosa_chinensis RchiOBHm_Chr1g0375131
rosa_laevigata RLG00000026684
rosa_multiflora Rmu_sc0000554.1_g000021
rosa_roxburghii Rroxscaffold_4G00282990
rosa_rugosa Rorug01G0388700
rosa_samantha Rh1AG399200 Rh1BG365300 Rh1CG378200 Rh1DG396000
rosa_wichuraiana Rw1G035440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 656, 721
Acc65I GGTACC 1 cut(s) 509
AccB1I GGYRCC 1 cut(s) 509
AccBSI CCGCTC 1 cut(s) 51
AciI CCGC 7 cut(s) 51, 128, 275, 294, 501, 574, 867
AclWI GGATC 4 cut(s) 173, 607, 633, 915
AcyI GRCGYC 1 cut(s) 143
AfaI GTAC 3 cut(s) 172, 511, 556
AfiI CCNNNNNNNGG 7 cut(s) 112, 113, 238, 281, 303, 730, 903
AflIII ACRYGT 1 cut(s) 354
AgsI TTSAA 1 cut(s) 519
AjiI CACGTC 1 cut(s) 355
AjnI CCWGG 1 cut(s) 296
AluBI AGCT 7 cut(s) 134, 156, 479, 485, 766, 939, 953
AluI AGCT 7 cut(s) 134, 156, 479, 485, 766, 939, 953
Alw21I GWGCWC 2 cut(s) 481, 936
Alw26I GTCTC 2 cut(s) 345, 784
Alw44I GTGCAC 1 cut(s) 932
AlwI GGATC 4 cut(s) 173, 607, 633, 915
AlwNI CAGNNNCTG 2 cut(s) 842, 956
Ama87I CYCGRG 2 cut(s) 480, 794
AoxI GGCC 4 cut(s) 197, 537, 571, 721
ApaLI GTGCAC 1 cut(s) 932
ApeKI GCWGC 2 cut(s) 131, 716
Asp718I GGTACC 1 cut(s) 509
AspA2I CCTAGG 1 cut(s) 200
AspS9I GGNCC 5 cut(s) 116, 212, 571, 668, 722
AsuC2I CCSGG 1 cut(s) 163
AsuHPI GGTGA 4 cut(s) 65, 383, 752, 857
AvaI CYCGRG 2 cut(s) 480, 794
AvaII GGWCC 3 cut(s) 116, 212, 668
AvrII CCTAGG 1 cut(s) 200
BaeGI GKGCMC 1 cut(s) 936
BanI GGYRCC 1 cut(s) 509
BanII GRGCYC 1 cut(s) 481
BbsI GAAGAC 1 cut(s) 228
Bbv12I GWGCWC 2 cut(s) 481, 936
BbvI GCAGC 2 cut(s) 143, 703
BccI CCATC 1 cut(s) 880
BceAI ACGGC 2 cut(s) 141, 156
BcgI CGANNNNNNTGC 2 cut(s) 471, 505
BciT130I CCWGG 1 cut(s) 298
BcnI CCSGG 1 cut(s) 163
BcoDI GTCTC 2 cut(s) 345, 784
BfaI CTAG 2 cut(s) 102, 201
BfuAI ACCTGC 2 cut(s) 656, 721
BisI GCNGC 4 cut(s) 129, 132, 574, 717
BlnI CCTAGG 1 cut(s) 200
BlsI GCNGC 4 cut(s) 130, 133, 575, 718
Bme1390I CCNGG 2 cut(s) 163, 298
Bme18I GGWCC 3 cut(s) 116, 212, 668
BmeT110I CYCGRG 2 cut(s) 480, 794
BmgBI CACGTC 1 cut(s) 355
BmgT120I GGNCC 5 cut(s) 116, 212, 571, 668, 722
BmiI GGNNCC 6 cut(s) 117, 118, 214, 511, 724, 891
BmrFI CCNGG 2 cut(s) 163, 298
BmsI GCATC 1 cut(s) 243
BpiI GAAGAC 1 cut(s) 228
BpmI CTGGAG 1 cut(s) 48
BpuMI CCSGG 1 cut(s) 163
Bsa29I ATCGAT 1 cut(s) 812
BsaHI GRCGYC 1 cut(s) 143
BsaJI CCNNGG 2 cut(s) 200, 901
BsaWI WCCGGW 2 cut(s) 281, 641
Bsc4I CCNNNNNNNGG 7 cut(s) 112, 113, 238, 281, 303, 730, 903
Bse1I ACTGG 1 cut(s) 540
BseBI CCWGG 1 cut(s) 298
BseCI ATCGAT 1 cut(s) 812
BseDI CCNNGG 2 cut(s) 200, 901
BseGI GGATG 2 cut(s) 414, 445
BseLI CCNNNNNNNGG 7 cut(s) 112, 113, 238, 281, 303, 730, 903
BseMII CTCAG 4 cut(s) 381, 606, 948, 963
BseNI ACTGG 1 cut(s) 540
BseRI GAGGAG 1 cut(s) 26
BseSI GKGCMC 1 cut(s) 936
BseXI GCAGC 2 cut(s) 143, 703
BsgI GTGCAG 1 cut(s) 749
BshFI GGCC 4 cut(s) 199, 539, 573, 723
BshNI GGYRCC 1 cut(s) 509
BshVI ATCGAT 1 cut(s) 812
BsiHKAI GWGCWC 2 cut(s) 481, 936
BsiHKCI CYCGRG 2 cut(s) 480, 794
BsiSI CCGG 4 cut(s) 162, 282, 432, 642
BslFI GGGAC 4 cut(s) 129, 215, 232, 803
BslI CCNNNNNNNGG 7 cut(s) 112, 113, 238, 281, 303, 730, 903
BsmAI GTCTC 2 cut(s) 345, 784
BsmFI GGGAC 4 cut(s) 129, 215, 232, 803
BsmI GAATGC 1 cut(s) 625
BsnI GGCC 4 cut(s) 199, 539, 573, 723
BsoBI CYCGRG 2 cut(s) 480, 794
Bsp1286I GDGCHC 2 cut(s) 481, 936
Bsp143I GATC 7 cut(s) 165, 330, 453, 599, 638, 711, 907
BspACI CCGC 7 cut(s) 51, 128, 275, 294, 501, 574, 867
BspANI GGCC 4 cut(s) 199, 539, 573, 723
BspCNI CTCAG 4 cut(s) 380, 607, 949, 962
BspDI ATCGAT 1 cut(s) 812
BspLI GGNNCC 6 cut(s) 117, 118, 214, 511, 724, 891
BspMI ACCTGC 2 cut(s) 656, 721
BspPI GGATC 4 cut(s) 173, 607, 633, 915
BspT107I GGYRCC 1 cut(s) 509
BsrBI CCGCTC 1 cut(s) 51
BsrI ACTGG 1 cut(s) 540
BssECI CCNNGG 2 cut(s) 200, 901
BssMI GATC 7 cut(s) 165, 330, 453, 599, 638, 711, 907
BssNI GRCGYC 1 cut(s) 143
BssT1I CCWWGG 1 cut(s) 200
Bst2UI CCWGG 1 cut(s) 298
Bst4CI ACNGT 4 cut(s) 424, 588, 677, 1013
Bst6I CTCTTC 2 cut(s) 182, 296
BstACI GRCGYC 1 cut(s) 143
BstC8I GCNNGC 5 cut(s) 197, 224, 317, 537, 721
BstDEI CTNAG 5 cut(s) 367, 530, 615, 949, 957
BstDSI CCRYGG 1 cut(s) 901
BstEII GGTNACC 1 cut(s) 758
BstENI CCTNNNNNAGG 1 cut(s) 301
BstF5I GGATG 2 cut(s) 414, 445
BstKTI GATC 7 cut(s) 168, 333, 456, 602, 641, 714, 910
BstMAI GTCTC 2 cut(s) 345, 784
BstMBI GATC 7 cut(s) 165, 330, 453, 599, 638, 711, 907
BstMWI GCNNNNNNNGC 2 cut(s) 140, 784
BstNI CCWGG 1 cut(s) 298
BstPI GGTNACC 1 cut(s) 758
BstSCI CCNGG 2 cut(s) 161, 296
BstSLI GKGCMC 1 cut(s) 936
BstV1I GCAGC 2 cut(s) 143, 703
BstV2I GAAGAC 1 cut(s) 228
BstX2I RGATCY 1 cut(s) 638
BstXI CCANNNNNNTGG 1 cut(s) 886
BstYI RGATCY 1 cut(s) 638
Bsu15I ATCGAT 1 cut(s) 812
BsuRI GGCC 4 cut(s) 199, 539, 573, 723
BsuTUI ATCGAT 1 cut(s) 812
BtgI CCRYGG 1 cut(s) 901
BtrI CACGTC 1 cut(s) 355
BtsCI GGATG 2 cut(s) 414, 445
BtsI GCAGTG 2 cut(s) 51, 843
BtsIMutI CAGTG 2 cut(s) 51, 843
BveI ACCTGC 2 cut(s) 656, 721
Cac8I GCNNGC 5 cut(s) 197, 224, 317, 537, 721
CaiI CAGNNNCTG 2 cut(s) 842, 956
Cfr13I GGNCC 5 cut(s) 116, 212, 571, 668, 722
ClaI ATCGAT 1 cut(s) 812
CseI GACGC 1 cut(s) 132
Csp6I GTAC 3 cut(s) 171, 510, 555
CviAII CATG 4 cut(s) 108, 350, 457, 649
CviQI GTAC 3 cut(s) 171, 510, 555
DdeI CTNAG 5 cut(s) 367, 530, 615, 949, 957
DpnI GATC 7 cut(s) 167, 332, 455, 601, 640, 713, 909
DpnII GATC 7 cut(s) 165, 330, 453, 599, 638, 711, 907
Eam1104I CTCTTC 2 cut(s) 182, 296
EarI CTCTTC 2 cut(s) 182, 296
EciI GGCGGA 2 cut(s) 283, 882
Ecl136II GAGCTC 1 cut(s) 479
Eco130I CCWWGG 1 cut(s) 200
Eco147I AGGCCT 1 cut(s) 199
Eco24I GRGCYC 1 cut(s) 481
Eco47I GGWCC 3 cut(s) 116, 212, 668
Eco53kI GAGCTC 1 cut(s) 479
Eco88I CYCGRG 2 cut(s) 480, 794
Eco91I GGTNACC 1 cut(s) 758
EcoICRI GAGCTC 1 cut(s) 479
EcoNI CCTNNNNNAGG 1 cut(s) 301
EcoO109I RGGNCCY 1 cut(s) 116
EcoO65I GGTNACC 1 cut(s) 758
EcoRII CCWGG 1 cut(s) 296
EcoT14I CCWWGG 1 cut(s) 200
EcoT38I GRGCYC 1 cut(s) 481
ErhI CCWWGG 1 cut(s) 200
FaeI CATG 4 cut(s) 111, 353, 460, 652
FaqI GGGAC 4 cut(s) 129, 215, 232, 803
FatI CATG 4 cut(s) 107, 349, 456, 648
Fnu4HI GCNGC 4 cut(s) 129, 132, 574, 717
FokI GGATG 2 cut(s) 401, 452
FriOI GRGCYC 1 cut(s) 481
Fsp4HI GCNGC 4 cut(s) 129, 132, 574, 717
FspBI CTAG 2 cut(s) 102, 201
GluI GCNGC 4 cut(s) 129, 132, 574, 717
GsuI CTGGAG 1 cut(s) 48
HaeIII GGCC 4 cut(s) 199, 539, 573, 723
HapII CCGG 4 cut(s) 162, 282, 432, 642
HgaI GACGC 1 cut(s) 132
Hin1I GRCGYC 1 cut(s) 143
Hin1II CATG 4 cut(s) 111, 353, 460, 652
HincII GTYRAC 1 cut(s) 325
HindII GTYRAC 1 cut(s) 325
HinfI GANTC 5 cut(s) 271, 326, 792, 925, 986
HpaII CCGG 4 cut(s) 162, 282, 432, 642
HphI GGTGA 4 cut(s) 65, 383, 752, 857
Hpy166II GTNNAC 3 cut(s) 325, 695, 934
Hpy188I TCNGA 4 cut(s) 138, 885, 924, 958
Hpy188III TCNNGA 4 cut(s) 65, 334, 597, 671
Hpy8I GTNNAC 3 cut(s) 325, 695, 934
Hpy99I CGWCG 4 cut(s) 142, 148, 268, 271
HpyAV CCTTC 3 cut(s) 850, 903, 907
HpyCH4III ACNGT 4 cut(s) 424, 588, 677, 1013
HpyCH4IV ACGT 2 cut(s) 354, 563
HpyF10VI GCNNNNNNNGC 2 cut(s) 140, 784
HpyF3I CTNAG 5 cut(s) 367, 530, 615, 949, 957
HpySE526I ACGT 2 cut(s) 354, 563
Hsp92I GRCGYC 1 cut(s) 143
Hsp92II CATG 4 cut(s) 111, 353, 460, 652
KflI GGGWCCC 1 cut(s) 116
KpnI GGTACC 1 cut(s) 513
Kzo9I GATC 7 cut(s) 165, 330, 453, 599, 638, 711, 907
LmnI GCTCC 4 cut(s) 67, 139, 476, 895
Lsp1109I GCAGC 2 cut(s) 143, 703
LweI GCATC 1 cut(s) 243
MaeI CTAG 2 cut(s) 102, 201
MaeII ACGT 2 cut(s) 354, 563
MaeIII GTNAC 4 cut(s) 442, 523, 625, 758
MalI GATC 7 cut(s) 167, 332, 455, 601, 640, 713, 909
MbiI CCGCTC 1 cut(s) 51
MboI GATC 7 cut(s) 165, 330, 453, 599, 638, 711, 907
MboII GAAGA 7 cut(s) 196, 199, 228, 313, 463, 537, 860
MflI RGATCY 1 cut(s) 638
MhlI GDGCHC 2 cut(s) 481, 936
MluCI AATT 2 cut(s) 378, 916
MlyI GAGTC 2 cut(s) 320, 786
MmeI TCCRAC 1 cut(s) 161
MnlI CCTC 7 cut(s) 4, 183, 297, 305, 430, 562, 976
MseI TTAA 1 cut(s) 560
MslI CAYNNNNRTG 2 cut(s) 348, 884
MspA1I CMGCKG 2 cut(s) 277, 766
MspI CCGG 4 cut(s) 162, 282, 432, 642
MspR9I CCNGG 2 cut(s) 163, 298
Mva1269I GAATGC 1 cut(s) 625
MvaI CCWGG 1 cut(s) 298
MwoI GCNNNNNNNGC 2 cut(s) 140, 784
NciI CCSGG 1 cut(s) 163
NdeII GATC 7 cut(s) 165, 330, 453, 599, 638, 711, 907
NlaIII CATG 4 cut(s) 111, 353, 460, 652
NlaIV GGNNCC 6 cut(s) 117, 118, 214, 511, 724, 891
NmuCI GTSAC 1 cut(s) 758
PaeR7I CTCGAG 2 cut(s) 480, 794
PceI AGGCCT 1 cut(s) 199
PcsI WCGNNNNNNNCGW 1 cut(s) 146
PctI GAATGC 1 cut(s) 625
PfeI GAWTC 3 cut(s) 271, 925, 986
PflFI GACNNNGTC 1 cut(s) 142
PkrI GCNGC 4 cut(s) 130, 133, 575, 718
PleI GAGTC 2 cut(s) 320, 786
PpsI GAGTC 2 cut(s) 320, 786
PpuMI RGGWCCY 1 cut(s) 116
Psp124BI GAGCTC 1 cut(s) 481
Psp5II RGGWCCY 1 cut(s) 116
Psp6I CCWGG 1 cut(s) 296
PspEI GGTNACC 1 cut(s) 758
PspGI CCWGG 1 cut(s) 296
PspN4I GGNNCC 6 cut(s) 117, 118, 214, 511, 724, 891
PspPI GGNCC 5 cut(s) 116, 212, 571, 668, 722
PspPPI RGGWCCY 1 cut(s) 116
PspXI VCTCGAGB 2 cut(s) 480, 794
PstNI CAGNNNCTG 2 cut(s) 842, 956
PsuI RGATCY 1 cut(s) 638
PsyI GACNNNGTC 1 cut(s) 142
PvuII CAGCTG 1 cut(s) 766
RsaI GTAC 3 cut(s) 172, 511, 556
RsaNI GTAC 3 cut(s) 171, 510, 555
RseI CAYNNNNRTG 2 cut(s) 348, 884
SacI GAGCTC 1 cut(s) 481
SaqAI TTAA 1 cut(s) 560
SatI GCNGC 4 cut(s) 129, 132, 574, 717
Sau3AI GATC 7 cut(s) 165, 330, 453, 599, 638, 711, 907
Sau96I GGNCC 5 cut(s) 116, 212, 571, 668, 722
SchI GAGTC 2 cut(s) 320, 786
ScrFI CCNGG 2 cut(s) 163, 298
SduI GDGCHC 2 cut(s) 481, 936
SfaNI GCATC 1 cut(s) 243
Sfr274I CTCGAG 2 cut(s) 480, 794
SinI GGWCC 3 cut(s) 116, 212, 668
SlaI CTCGAG 2 cut(s) 480, 794
SmiMI CAYNNNNRTG 2 cut(s) 348, 884
SmlI CTYRAG 2 cut(s) 480, 794
SmoI CTYRAG 2 cut(s) 480, 794
Sse9I AATT 2 cut(s) 378, 916
SseBI AGGCCT 1 cut(s) 199
SsiI CCGC 7 cut(s) 51, 128, 275, 294, 501, 574, 867
SspMI CTAG 2 cut(s) 102, 201
SstI GAGCTC 1 cut(s) 481
StuI AGGCCT 1 cut(s) 199
StyD4I CCNGG 2 cut(s) 161, 296
StyI CCWWGG 1 cut(s) 200
TaaI ACNGT 4 cut(s) 424, 588, 677, 1013
TaiI ACGT 2 cut(s) 357, 566
TaqI TCGA 5 cut(s) 269, 329, 481, 795, 812
TasI AATT 2 cut(s) 378, 916
TauI GCSGC 2 cut(s) 131, 576
TfiI GAWTC 3 cut(s) 271, 925, 986
Tru1I TTAA 1 cut(s) 560
Tru9I TTAA 1 cut(s) 560
TscAI CASTG 2 cut(s) 51, 843
TseFI GTSAC 1 cut(s) 758
TseI GCWGC 2 cut(s) 131, 716
Tsp45I GTSAC 1 cut(s) 758
TspDTI ATGAA 3 cut(s) 108, 464, 869
TspGWI ACGGA 3 cut(s) 188, 192, 225
TspRI CASTG 2 cut(s) 51, 843
Tth111I GACNNNGTC 1 cut(s) 142
VneI GTGCAC 1 cut(s) 932
VpaK11BI GGWCC 3 cut(s) 116, 212, 668
XagI CCTNNNNNAGG 1 cut(s) 301
XhoI CTCGAG 2 cut(s) 480, 794
XmaJI CCTAGG 1 cut(s) 200
XspI CTAG 2 cut(s) 102, 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.