Rorug01G0388700

AT-hook motif nuclear-localized protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0012862
Physical Location & Seq
Reverse (-)
49993699 .. 49996246
2548 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0388700.1

Sequence Viewer

Length: 963 bp
ATGGGCAAGCTCTCCAAGGCCGAGAAGAAGATCAACTACGACGCCAAGCTCTGCAAGCTTCTCGAGGACTATGGCCAGGTGCTCATCGTCGCCGCCGATAACGTCGGCTCCAATCAGCTCCAGAACATCCGCAAGGGTCTCCGCGGCGACTCCACTGTGCTCATGGGGAAGAACACCATGATGAAGAGGTCCATCAAGATTCATGCTGCCAAGACCGGTAACGATGCTTACCTCAACCTCGTCCCCCTCCTCGTGGGTAATGTTGGTTTGATCTTCACCAAGGGTGATTTGAAGGAAGTCAGTGAGGAGGTTGCTAAGTACAAGGTTGGAGCTCCTGCTCGTGTTGGTTTGGTTGCTCCTATTGATGTCGTTGTTCCTCCTGGCAACACTGGTCTCGACCCATCCCAGACATCTTTCTTCCAGGTGCTTAACATTCCAACCAAGATTAACAAGGGTACTGTGGAAATCATTACCCCTGTTGAACTTATCAGGAAGGGTGACAAGGTGGGGTCTTCTGAGGCTGCCCTTCTTGCCAAGCTTGGGATCAGGCCATTCTCTTATGGTCTTGTTGTCCAGATGGTGTATGACAATGGATCTGTCTTCAGCCCAGAGGTGCTTAATCTTACTGAGGATGATCTTATGATTAAGTTTGCTTCTGGTGTCTCCAATGTCACAGCATTGGCACTGGCCATTTCCTACCCAACAATTGCAGCTGCACCACATATGTTCCTCAATGCATACAAGAATGTGTTGGCAATTGCTGTGGCTACTGAGTATTCCTTCCCTCAAGCTGATAAGGTCAAGGAGTATCTCGAGGATCCTTCCAAGTTTGCTGTTGCCGTGGCTGCTCCTGCCGCAGCTGCCGGTGGTGGGGCTGCCCCTGCTGCAGCTGCAGAGGAAGCGAAGAAGGAAGAGCCTGCTGAGGAGTCCGATGATGACATGGGTTTCAGTTTGTTTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF296

Protein Analysis

320

Amino Acids

33.88

Weight (kDa)

5.46

Isoelectric Point (pI)

32.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L10 PF00466 6 - 107 5.5e-18 Ribosomal protein L10
RL10P_insert PF17777 113 - 182 1.3e-21 Insertion domain in 60S ribosomal protein L10P
Ribosomal_60s PF00428 233 - 319 1.3e-23 60s Acidic ribosomal protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012862)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G62260 AT5G62260 AT5G62260
fragaria_vesca FvH4_7g28180
malus_domestica MD01G1185700.v1.1 MD07G1257800.v1.1
prunus_persica Prupe.2G282300_v2.0.a1
pyrus_communis pycom07g23090
rosa_chinensis RchiOBHm_Chr1g0375131
rosa_laevigata RLG00000026684
rosa_multiflora Rmu_sc0000554.1_g000021
rosa_roxburghii Rroxscaffold_4G00282990
rosa_rugosa Rorug01G0388700
rosa_samantha Rh1AG399200 Rh1BG365300 Rh1CG378200 Rh1DG396000
rosa_wichuraiana Rw1G035440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 144
AciI CCGC 5 cut(s) 93, 130, 142, 144, 855
AclWI GGATC 4 cut(s) 551, 601, 812, 825
AcoI YGGCCR 2 cut(s) 73, 687
AcuI CTGAAG 1 cut(s) 586
AcyI GRCGYC 1 cut(s) 42
AfaI GTAC 2 cut(s) 320, 457
AfiI CCNNNNNNNGG 3 cut(s) 253, 540, 870
AgeI ACCGGT 1 cut(s) 215
AgsI TTSAA 2 cut(s) 292, 482
AjnI CCWGG 3 cut(s) 75, 379, 420
Alw21I GWGCWC 3 cut(s) 84, 162, 334
Alw26I GTCTC 3 cut(s) 143, 398, 667
AlwI GGATC 4 cut(s) 551, 601, 812, 825
Ama87I CYCGRG 2 cut(s) 62, 812
AoxI GGCC 4 cut(s) 18, 73, 548, 687
AsiGI ACCGGT 1 cut(s) 215
AspS9I GGNCC 1 cut(s) 189
AsuHPI GGTGA 3 cut(s) 268, 296, 509
AvaI CYCGRG 2 cut(s) 62, 812
AvaII GGWCC 1 cut(s) 189
BalI TGGCCA 2 cut(s) 75, 689
BamHI GGATCC 1 cut(s) 817
BanII GRGCYC 1 cut(s) 334
BarI GAAGNNNNNNTAC 2 cut(s) 20, 52
BauI CACGAG 2 cut(s) 251, 339
BbsI GAAGAC 2 cut(s) 504, 592
Bbv12I GWGCWC 3 cut(s) 84, 162, 334
BbvCI CCTCAGC 1 cut(s) 921
BccI CCATC 3 cut(s) 200, 409, 571
BceAI ACGGC 1 cut(s) 824
BcgI CGANNNNNNTGC 2 cut(s) 43, 77
BciT130I CCWGG 3 cut(s) 77, 381, 422
BcoDI GTCTC 3 cut(s) 143, 398, 667
BfmI CTRYAG 2 cut(s) 885, 891
Bme1390I CCNGG 3 cut(s) 77, 381, 422
Bme18I GGWCC 1 cut(s) 189
BmeT110I CYCGRG 2 cut(s) 62, 812
BmgT120I GGNCC 1 cut(s) 189
BmiI GGNNCC 2 cut(s) 109, 819
BmrFI CCNGG 3 cut(s) 77, 381, 422
BmsI GCATC 1 cut(s) 214
BpiI GAAGAC 2 cut(s) 504, 592
BpmI CTGGAG 1 cut(s) 104
Bpu10I CCTNAGC 1 cut(s) 921
BpuEI CTTGAG 1 cut(s) 771
BsaHI GRCGYC 1 cut(s) 42
BsaI GGTCTC 2 cut(s) 143, 398
BsaJI CCNNGG 4 cut(s) 15, 142, 279, 840
BsaWI WCCGGW 1 cut(s) 215
BsaXI ACNNNNNCTCC 2 cut(s) 92, 122
Bsc4I CCNNNNNNNGG 3 cut(s) 253, 540, 870
Bse118I RCCGGY 2 cut(s) 215, 863
Bse1I ACTGG 2 cut(s) 394, 690
BseBI CCWGG 3 cut(s) 77, 381, 422
BseDI CCNNGG 4 cut(s) 15, 142, 279, 840
BseGI GGATG 3 cut(s) 126, 401, 637
BseLI CCNNNNNNNGG 3 cut(s) 253, 540, 870
BseMII CTCAG 4 cut(s) 507, 618, 762, 912
BseNI ACTGG 2 cut(s) 394, 690
BseRI GAGGAG 3 cut(s) 239, 320, 938
BsgI GTGCAG 1 cut(s) 699
Bsh1236I CGCG 1 cut(s) 144
BshFI GGCC 4 cut(s) 20, 75, 550, 689
BshTI ACCGGT 1 cut(s) 215
BsiHKAI GWGCWC 3 cut(s) 84, 162, 334
BsiHKCI CYCGRG 2 cut(s) 62, 812
BsiSI CCGG 2 cut(s) 216, 864
BslFI GGGAC 1 cut(s) 227
BslI CCNNNNNNNGG 3 cut(s) 253, 540, 870
BsmAI GTCTC 3 cut(s) 143, 398, 667
BsmFI GGGAC 1 cut(s) 227
BsnI GGCC 4 cut(s) 20, 75, 550, 689
Bso31I GGTCTC 2 cut(s) 143, 398
BsoBI CYCGRG 2 cut(s) 62, 812
Bsp1286I GDGCHC 3 cut(s) 84, 162, 334
Bsp143I GATC 6 cut(s) 30, 270, 543, 593, 634, 817
BspACI CCGC 5 cut(s) 93, 130, 142, 144, 855
BspANI GGCC 4 cut(s) 20, 75, 550, 689
BspCNI CTCAG 4 cut(s) 508, 619, 763, 913
BspFNI CGCG 1 cut(s) 144
BspLI GGNNCC 2 cut(s) 109, 819
BspMAI CTGCAG 2 cut(s) 889, 895
BspPI GGATC 4 cut(s) 551, 601, 812, 825
BspQI GCTCTTC 1 cut(s) 906
BspTNI GGTCTC 2 cut(s) 143, 398
BsrFI RCCGGY 2 cut(s) 215, 863
BsrI ACTGG 2 cut(s) 394, 690
BssAI RCCGGY 2 cut(s) 215, 863
BssECI CCNNGG 4 cut(s) 15, 142, 279, 840
BssMI GATC 6 cut(s) 30, 270, 543, 593, 634, 817
BssNI GRCGYC 1 cut(s) 42
BssSI CACGAG 2 cut(s) 251, 339
BssT1I CCWWGG 2 cut(s) 15, 279
Bst2BI CACGAG 2 cut(s) 251, 339
Bst2UI CCWGG 3 cut(s) 77, 381, 422
Bst4CI ACNGT 2 cut(s) 157, 460
Bst6I CTCTTC 2 cut(s) 179, 906
BstACI GRCGYC 1 cut(s) 42
BstC8I GCNNGC 3 cut(s) 8, 56, 918
BstDEI CTNAG 5 cut(s) 315, 516, 627, 771, 921
BstDSI CCRYGG 2 cut(s) 142, 840
BstF5I GGATG 3 cut(s) 126, 401, 637
BstFNI CGCG 1 cut(s) 144
BstKTI GATC 6 cut(s) 33, 273, 546, 596, 637, 820
BstMAI GTCTC 3 cut(s) 143, 398, 667
BstMBI GATC 6 cut(s) 30, 270, 543, 593, 634, 817
BstNI CCWGG 3 cut(s) 77, 381, 422
BstSCI CCNGG 3 cut(s) 75, 379, 420
BstSFI CTRYAG 2 cut(s) 885, 891
BstUI CGCG 1 cut(s) 144
BstV2I GAAGAC 2 cut(s) 504, 592
BstX2I RGATCY 2 cut(s) 593, 817
BstYI RGATCY 2 cut(s) 593, 817
BsuRI GGCC 4 cut(s) 20, 75, 550, 689
BtgI CCRYGG 2 cut(s) 142, 840
BtsCI GGATG 3 cut(s) 126, 401, 637
BtsIMutI CAGTG 4 cut(s) 153, 307, 387, 683
Cac8I GCNNGC 3 cut(s) 8, 56, 918
Cfr10I RCCGGY 2 cut(s) 215, 863
Cfr13I GGNCC 1 cut(s) 189
Cfr42I CCGCGG 1 cut(s) 145
CseI GACGC 1 cut(s) 50
Csp6I GTAC 2 cut(s) 319, 456
CspAI ACCGGT 1 cut(s) 215
CspCI CAANNNNNGTGG 2 cut(s) 744, 779
CviAII CATG 4 cut(s) 163, 178, 203, 940
CviQI GTAC 2 cut(s) 319, 456
DdeI CTNAG 5 cut(s) 315, 516, 627, 771, 921
DpnI GATC 6 cut(s) 32, 272, 545, 595, 636, 819
DpnII GATC 6 cut(s) 30, 270, 543, 593, 634, 817
EaeI YGGCCR 2 cut(s) 73, 687
Eam1104I CTCTTC 2 cut(s) 179, 906
EarI CTCTTC 2 cut(s) 179, 906
Ecl136II GAGCTC 1 cut(s) 332
Eco130I CCWWGG 2 cut(s) 15, 279
Eco24I GRGCYC 1 cut(s) 334
Eco31I GGTCTC 2 cut(s) 143, 398
Eco47I GGWCC 1 cut(s) 189
Eco53kI GAGCTC 1 cut(s) 332
Eco57I CTGAAG 1 cut(s) 586
Eco88I CYCGRG 2 cut(s) 62, 812
EcoICRI GAGCTC 1 cut(s) 332
EcoRII CCWGG 3 cut(s) 75, 379, 420
EcoT14I CCWWGG 2 cut(s) 15, 279
EcoT22I ATGCAT 1 cut(s) 739
EcoT38I GRGCYC 1 cut(s) 334
ErhI CCWWGG 2 cut(s) 15, 279
FaeI CATG 4 cut(s) 166, 181, 206, 943
FaqI GGGAC 1 cut(s) 227
FatI CATG 4 cut(s) 162, 177, 202, 939
FauNDI CATATG 1 cut(s) 723
FokI GGATG 3 cut(s) 113, 388, 644
FriOI GRGCYC 1 cut(s) 334
GsuI CTGGAG 1 cut(s) 104
HaeIII GGCC 4 cut(s) 20, 75, 550, 689
HapII CCGG 2 cut(s) 216, 864
HgaI GACGC 1 cut(s) 50
Hin1I GRCGYC 1 cut(s) 42
Hin1II CATG 4 cut(s) 166, 181, 206, 943
HindIII AAGCTT 2 cut(s) 56, 536
HinfI GANTC 3 cut(s) 149, 199, 926
HpaII CCGG 2 cut(s) 216, 864
HphI GGTGA 3 cut(s) 268, 296, 509
Hpy188I TCNGA 2 cut(s) 517, 931
Hpy188III TCNNGA 7 cut(s) 62, 121, 196, 395, 490, 574, 812
Hpy99I CGWCG 3 cut(s) 44, 92, 107
HpyAV CCTTC 6 cut(s) 286, 487, 536, 790, 831, 901
HpyCH4III ACNGT 2 cut(s) 157, 460
HpyCH4IV ACGT 1 cut(s) 102
HpyCH4V TGCA 6 cut(s) 54, 710, 716, 737, 887, 893
HpyF3I CTNAG 5 cut(s) 315, 516, 627, 771, 921
HpySE526I ACGT 1 cut(s) 102
Hsp92I GRCGYC 1 cut(s) 42
Hsp92II CATG 4 cut(s) 166, 181, 206, 943
KspI CCGCGG 1 cut(s) 145
Kzo9I GATC 6 cut(s) 30, 270, 543, 593, 634, 817
LguI GCTCTTC 1 cut(s) 906
LmnI GCTCC 6 cut(s) 113, 123, 329, 337, 361, 853
LweI GCATC 1 cut(s) 214
MaeII ACGT 1 cut(s) 102
MaeIII GTNAC 3 cut(s) 218, 497, 670
MalI GATC 6 cut(s) 32, 272, 545, 595, 636, 819
MboI GATC 6 cut(s) 30, 270, 543, 593, 634, 817
MfeI CAATTG 2 cut(s) 705, 756
MflI RGATCY 2 cut(s) 593, 817
MhlI GDGCHC 3 cut(s) 84, 162, 334
MlsI TGGCCA 2 cut(s) 75, 689
MluCI AATT 2 cut(s) 705, 756
MluNI TGGCCA 2 cut(s) 75, 689
MlyI GAGTC 2 cut(s) 143, 935
MmeI TCCRAC 2 cut(s) 307, 461
Mox20I TGGCCA 2 cut(s) 75, 689
Mph1103I ATGCAT 1 cut(s) 739
MscI TGGCCA 2 cut(s) 75, 689
MseI TTAA 5 cut(s) 429, 447, 618, 645, 961
MslI CAYNNNNRTG 1 cut(s) 179
Msp20I TGGCCA 2 cut(s) 75, 689
MspA1I CMGCKG 4 cut(s) 144, 713, 860, 890
MspI CCGG 2 cut(s) 216, 864
MspR9I CCNGG 3 cut(s) 77, 381, 422
MunI CAATTG 2 cut(s) 705, 756
MvaI CCWGG 3 cut(s) 77, 381, 422
MvnI CGCG 1 cut(s) 144
NdeI CATATG 1 cut(s) 723
NdeII GATC 6 cut(s) 30, 270, 543, 593, 634, 817
NlaIII CATG 4 cut(s) 166, 181, 206, 943
NlaIV GGNNCC 2 cut(s) 109, 819
NmeAIII GCCGAG 1 cut(s) 46
NmuCI GTSAC 2 cut(s) 497, 670
NsiI ATGCAT 1 cut(s) 739
PaeR7I CTCGAG 2 cut(s) 62, 812
PciSI GCTCTTC 1 cut(s) 906
PcsI WCGNNNNNNNCGW 1 cut(s) 93
PfeI GAWTC 1 cut(s) 199
PinAI ACCGGT 1 cut(s) 215
PleI GAGTC 2 cut(s) 143, 934
PpsI GAGTC 2 cut(s) 143, 934
Psp124BI GAGCTC 1 cut(s) 334
Psp6I CCWGG 3 cut(s) 75, 379, 420
PspGI CCWGG 3 cut(s) 75, 379, 420
PspN4I GGNNCC 2 cut(s) 109, 819
PspPI GGNCC 1 cut(s) 189
PstI CTGCAG 2 cut(s) 889, 895
PsuI RGATCY 2 cut(s) 593, 817
PvuII CAGCTG 3 cut(s) 713, 860, 890
RsaI GTAC 2 cut(s) 320, 457
RsaNI GTAC 2 cut(s) 319, 456
RseI CAYNNNNRTG 1 cut(s) 179
SacI GAGCTC 1 cut(s) 334
SacII CCGCGG 1 cut(s) 145
SapI GCTCTTC 1 cut(s) 906
SaqAI TTAA 5 cut(s) 429, 447, 618, 645, 961
Sau3AI GATC 6 cut(s) 30, 270, 543, 593, 634, 817
Sau96I GGNCC 1 cut(s) 189
SchI GAGTC 2 cut(s) 143, 935
ScrFI CCNGG 3 cut(s) 77, 381, 422
SduI GDGCHC 3 cut(s) 84, 162, 334
SfaNI GCATC 1 cut(s) 214
SfcI CTRYAG 2 cut(s) 885, 891
Sfr274I CTCGAG 2 cut(s) 62, 812
Sfr303I CCGCGG 1 cut(s) 145
SgrBI CCGCGG 1 cut(s) 145
SinI GGWCC 1 cut(s) 189
SlaI CTCGAG 2 cut(s) 62, 812
SmiMI CAYNNNNRTG 1 cut(s) 179
SmlI CTYRAG 3 cut(s) 62, 786, 812
SmoI CTYRAG 3 cut(s) 62, 786, 812
Sse9I AATT 2 cut(s) 705, 756
SsiI CCGC 5 cut(s) 93, 130, 142, 144, 855
SstI GAGCTC 1 cut(s) 334
StyD4I CCNGG 3 cut(s) 75, 379, 420
StyI CCWWGG 2 cut(s) 15, 279
TaaI ACNGT 2 cut(s) 157, 460
TaiI ACGT 1 cut(s) 105
TaqI TCGA 3 cut(s) 63, 396, 813
TasI AATT 2 cut(s) 705, 756
TatI WGTACW 1 cut(s) 318
TauI GCSGC 3 cut(s) 95, 147, 857
TfiI GAWTC 1 cut(s) 199
Tru1I TTAA 5 cut(s) 429, 447, 618, 645, 961
Tru9I TTAA 5 cut(s) 429, 447, 618, 645, 961
TscAI CASTG 4 cut(s) 160, 307, 394, 690
TseFI GTSAC 2 cut(s) 497, 670
Tsp45I GTSAC 2 cut(s) 497, 670
TspDTI ATGAA 2 cut(s) 191, 197
TspRI CASTG 4 cut(s) 160, 307, 394, 690
VpaK11BI GGWCC 1 cut(s) 189
XcmI CCANNNNNNNNNTGG 1 cut(s) 160
XhoI CTCGAG 2 cut(s) 62, 812
Zsp2I ATGCAT 1 cut(s) 739
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.