pycom07g23090

AT-hook motif nuclear-localized protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0012862
Physical Location & Seq
Reverse (-)
24149313 .. 24153273
3961 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g23090.2

Sequence Viewer

Length: 1002 bp
ATGCAAATGGAGGAGAAAGACAAGAATTTGTTTTCTGGTGTAGCAGTGAGCGGTGAGAACGCTCCAGATGATTACAGGATTGCCCCAAGAAATGAAAACCCTAGCCCATCTGGGGGACCCACAACGGCGGCAGCTCCGACGGCGTCGCCGATGAGCTTGACCGGGATCGGTACGGATGGAAAGAAGAAGAGGGGCAGGCCTAGGAAGTACGGACCCGACAGCAAGCCCCTCCCGTCGTCGGCATTGTCCCCGATGCCGATTTCGTCGTCGATTCCGCTGACCGGAGAGTTCTCCGCCTGGAAGAGGGGCAGAGGCAAGCCCGTTGACTCGATCAAGAAGTCTCACAAGCATGACGTGTTTGAGAACTCAGGTGAGAAAATTGCATACTCGGTTGGTGCAAACTTTACACCTCACATCCTTACTGTCCATTCTGGCGAGGATGTTACAATGAAGATCATGTCATTCTCTCAACAAGGAGCTCGAGCTATTTGCATACTTTCTGCAAATGGTACCATTTCAAATGTTACACTTAGGCAGGCCAGTTCTTCTGGGGGTACTTTAACATATGAGGGCCGCTTTGAGATACTTTCCTTGTCGGGATCGTATATACCAACTGAGAATGCAGGAACAAAGAGCAGATCCGGTGGCATGAGTGTTGCTTTGGCAGGTCCAGACGGTAGAGTGGTTGGGGGTGGACTTGCTGGTATGCTCGATCGCTGCTGGCCCCGTGCAGGTCACCAGCTGGAACAGAAGCCGAAGAAGCAGAGAATCGAGCCTGTATCATCGTCAATTGTCCCTATCATTGTCAATGCTGTGTCTGGTGAAGAAATGAAGGTCTATGGCGGAGTAAAGCCCATTCTGATGGCTCCTTCCTTCCACGGAGATCGTTCTAATTGTCTGAATCCCGTGCAAAGCTACAAGAACTCAGCTTCTGAGAGTAAATCATTGTTGTTGGAAGAGGAATCTAAAGGCTCTGGTCAAGCAAACTGTGAAGTTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF296

Protein Analysis

334

Amino Acids

35.11

Weight (kDa)

9.24

Isoelectric Point (pI)

45.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012862)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G62260 AT5G62260 AT5G62260
fragaria_vesca FvH4_7g28180
malus_domestica MD01G1185700.v1.1 MD07G1257800.v1.1
prunus_persica Prupe.2G282300_v2.0.a1
pyrus_communis pycom07g23090
rosa_chinensis RchiOBHm_Chr1g0375131
rosa_laevigata RLG00000026684
rosa_multiflora Rmu_sc0000554.1_g000021
rosa_roxburghii Rroxscaffold_4G00282990
rosa_rugosa Rorug01G0388700
rosa_samantha Rh1AG399200 Rh1BG365300 Rh1CG378200 Rh1DG396000
rosa_wichuraiana Rw1G035440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 656, 722
Acc65I GGTACC 1 cut(s) 509
AccB1I GGYRCC 1 cut(s) 509
AccBSI CCGCTC 1 cut(s) 51
AciI CCGC 6 cut(s) 51, 128, 275, 294, 574, 843
AclWI GGATC 3 cut(s) 173, 607, 633
AcsI RAATTY 1 cut(s) 25
AcyI GRCGYC 1 cut(s) 143
AfaI GTAC 4 cut(s) 172, 209, 511, 556
AfiI CCNNNNNNNGG 6 cut(s) 112, 113, 238, 281, 303, 731
AflIII ACRYGT 1 cut(s) 354
AgsI TTSAA 1 cut(s) 519
AjiI CACGTC 1 cut(s) 355
AjnI CCWGG 1 cut(s) 296
AluBI AGCT 7 cut(s) 134, 156, 479, 485, 742, 915, 929
AluI AGCT 7 cut(s) 134, 156, 479, 485, 742, 915, 929
Alw21I GWGCWC 1 cut(s) 481
Alw26I GTCTC 1 cut(s) 345
AlwI GGATC 3 cut(s) 173, 607, 633
AlwNI CAGNNNCTG 1 cut(s) 932
Ama87I CYCGRG 1 cut(s) 480
AoxI GGCC 4 cut(s) 197, 537, 571, 722
ApeKI GCWGC 2 cut(s) 131, 717
ApoI RAATTY 1 cut(s) 25
Asp718I GGTACC 1 cut(s) 509
AspA2I CCTAGG 1 cut(s) 200
AspS9I GGNCC 5 cut(s) 116, 212, 571, 668, 723
AsuC2I CCSGG 1 cut(s) 163
AsuHPI GGTGA 4 cut(s) 65, 383, 728, 833
AvaI CYCGRG 1 cut(s) 480
AvaII GGWCC 3 cut(s) 116, 212, 668
AvrII CCTAGG 1 cut(s) 200
BanI GGYRCC 1 cut(s) 509
BanII GRGCYC 1 cut(s) 481
Bbv12I GWGCWC 1 cut(s) 481
BbvI GCAGC 2 cut(s) 143, 704
BccI CCATC 3 cut(s) 115, 170, 856
BceAI ACGGC 2 cut(s) 141, 156
BcgI CGANNNNNNTGC 2 cut(s) 471, 505
BciT130I CCWGG 1 cut(s) 298
BcnI CCSGG 1 cut(s) 163
BcoDI GTCTC 1 cut(s) 345
BfaI CTAG 2 cut(s) 102, 201
BfuAI ACCTGC 2 cut(s) 656, 722
BisI GCNGC 4 cut(s) 129, 132, 574, 718
BlnI CCTAGG 1 cut(s) 200
BlsI GCNGC 4 cut(s) 130, 133, 575, 719
Bme1390I CCNGG 2 cut(s) 163, 298
Bme18I GGWCC 3 cut(s) 116, 212, 668
BmeT110I CYCGRG 1 cut(s) 480
BmgBI CACGTC 1 cut(s) 355
BmgT120I GGNCC 5 cut(s) 116, 212, 571, 668, 723
BmiI GGNNCC 6 cut(s) 117, 118, 214, 511, 725, 867
BmrFI CCNGG 2 cut(s) 163, 298
BmsI GCATC 1 cut(s) 243
BpmI CTGGAG 1 cut(s) 48
BpuMI CCSGG 1 cut(s) 163
BsaHI GRCGYC 1 cut(s) 143
BsaJI CCNNGG 2 cut(s) 200, 877
BsaWI WCCGGW 2 cut(s) 281, 641
Bsc4I CCNNNNNNNGG 6 cut(s) 112, 113, 238, 281, 303, 731
Bse1I ACTGG 1 cut(s) 540
BseBI CCWGG 1 cut(s) 298
BseDI CCNNGG 2 cut(s) 200, 877
BseGI GGATG 3 cut(s) 181, 414, 445
BseLI CCNNNNNNNGG 6 cut(s) 112, 113, 238, 281, 303, 731
BseMII CTCAG 4 cut(s) 381, 606, 924, 939
BseNI ACTGG 1 cut(s) 540
BseRI GAGGAG 1 cut(s) 26
BseXI GCAGC 2 cut(s) 143, 704
BsgI GTGCAG 1 cut(s) 750
Bsh1285I CGRYCG 1 cut(s) 715
BshFI GGCC 4 cut(s) 199, 539, 573, 724
BshNI GGYRCC 1 cut(s) 509
BsiEI CGRYCG 1 cut(s) 715
BsiHKAI GWGCWC 1 cut(s) 481
BsiHKCI CYCGRG 1 cut(s) 480
BsiSI CCGG 3 cut(s) 162, 282, 642
BslFI GGGAC 3 cut(s) 129, 232, 779
BslI CCNNNNNNNGG 6 cut(s) 112, 113, 238, 281, 303, 731
BsmAI GTCTC 1 cut(s) 345
BsmFI GGGAC 3 cut(s) 129, 232, 779
BsmI GAATGC 1 cut(s) 625
BsnI GGCC 4 cut(s) 199, 539, 573, 724
BsoBI CYCGRG 1 cut(s) 480
Bsp1286I GDGCHC 1 cut(s) 481
Bsp143I GATC 7 cut(s) 165, 330, 453, 599, 638, 712, 883
BspACI CCGC 6 cut(s) 51, 128, 275, 294, 574, 843
BspANI GGCC 4 cut(s) 199, 539, 573, 724
BspCNI CTCAG 4 cut(s) 380, 607, 925, 938
BspLI GGNNCC 6 cut(s) 117, 118, 214, 511, 725, 867
BspMI ACCTGC 2 cut(s) 656, 722
BspPI GGATC 3 cut(s) 173, 607, 633
BspT107I GGYRCC 1 cut(s) 509
BsrBI CCGCTC 1 cut(s) 51
BsrI ACTGG 1 cut(s) 540
BssECI CCNNGG 2 cut(s) 200, 877
BssMI GATC 7 cut(s) 165, 330, 453, 599, 638, 712, 883
BssNI GRCGYC 1 cut(s) 143
BssT1I CCWWGG 1 cut(s) 200
Bst2UI CCWGG 1 cut(s) 298
Bst4CI ACNGT 3 cut(s) 424, 677, 989
Bst6I CTCTTC 3 cut(s) 182, 296, 951
BstACI GRCGYC 1 cut(s) 143
BstC8I GCNNGC 5 cut(s) 197, 224, 317, 537, 722
BstDEI CTNAG 5 cut(s) 367, 530, 615, 925, 933
BstDSI CCRYGG 1 cut(s) 877
BstEII GGTNACC 1 cut(s) 734
BstENI CCTNNNNNAGG 1 cut(s) 301
BstF5I GGATG 3 cut(s) 181, 414, 445
BstKTI GATC 7 cut(s) 168, 333, 456, 602, 641, 715, 886
BstMAI GTCTC 1 cut(s) 345
BstMBI GATC 7 cut(s) 165, 330, 453, 599, 638, 712, 883
BstMCI CGRYCG 1 cut(s) 715
BstMWI GCNNNNNNNGC 2 cut(s) 140, 760
BstNI CCWGG 1 cut(s) 298
BstPI GGTNACC 1 cut(s) 734
BstSCI CCNGG 2 cut(s) 161, 296
BstV1I GCAGC 2 cut(s) 143, 704
BstX2I RGATCY 1 cut(s) 638
BstXI CCANNNNNNTGG 1 cut(s) 862
BstYI RGATCY 1 cut(s) 638
BsuRI GGCC 4 cut(s) 199, 539, 573, 724
BtgI CCRYGG 1 cut(s) 877
BtrI CACGTC 1 cut(s) 355
BtsCI GGATG 3 cut(s) 181, 414, 445
BtsI GCAGTG 1 cut(s) 51
BtsIMutI CAGTG 1 cut(s) 51
BveI ACCTGC 2 cut(s) 656, 722
Cac8I GCNNGC 5 cut(s) 197, 224, 317, 537, 722
CaiI CAGNNNCTG 1 cut(s) 932
Cfr13I GGNCC 5 cut(s) 116, 212, 571, 668, 723
CseI GACGC 1 cut(s) 132
Csp6I GTAC 4 cut(s) 171, 208, 510, 555
CviAII CATG 3 cut(s) 350, 457, 649
CviQI GTAC 4 cut(s) 171, 208, 510, 555
DdeI CTNAG 5 cut(s) 367, 530, 615, 925, 933
DpnI GATC 7 cut(s) 167, 332, 455, 601, 640, 714, 885
DpnII GATC 7 cut(s) 165, 330, 453, 599, 638, 712, 883
Eam1104I CTCTTC 3 cut(s) 182, 296, 951
EarI CTCTTC 3 cut(s) 182, 296, 951
EciI GGCGGA 2 cut(s) 283, 858
Ecl136II GAGCTC 1 cut(s) 479
Eco130I CCWWGG 1 cut(s) 200
Eco147I AGGCCT 1 cut(s) 199
Eco24I GRGCYC 1 cut(s) 481
Eco47I GGWCC 3 cut(s) 116, 212, 668
Eco53kI GAGCTC 1 cut(s) 479
Eco88I CYCGRG 1 cut(s) 480
Eco91I GGTNACC 1 cut(s) 734
EcoICRI GAGCTC 1 cut(s) 479
EcoNI CCTNNNNNAGG 1 cut(s) 301
EcoO109I RGGNCCY 1 cut(s) 116
EcoO65I GGTNACC 1 cut(s) 734
EcoRII CCWGG 1 cut(s) 296
EcoT14I CCWWGG 1 cut(s) 200
EcoT38I GRGCYC 1 cut(s) 481
ErhI CCWWGG 1 cut(s) 200
FaeI CATG 3 cut(s) 353, 460, 652
FaqI GGGAC 3 cut(s) 129, 232, 779
FatI CATG 3 cut(s) 349, 456, 648
FauNDI CATATG 1 cut(s) 565
Fnu4HI GCNGC 4 cut(s) 129, 132, 574, 718
FokI GGATG 3 cut(s) 188, 401, 452
FriOI GRGCYC 1 cut(s) 481
Fsp4HI GCNGC 4 cut(s) 129, 132, 574, 718
FspBI CTAG 2 cut(s) 102, 201
GluI GCNGC 4 cut(s) 129, 132, 574, 718
GsuI CTGGAG 1 cut(s) 48
HaeIII GGCC 4 cut(s) 199, 539, 573, 724
HapII CCGG 3 cut(s) 162, 282, 642
HgaI GACGC 1 cut(s) 132
Hin1I GRCGYC 1 cut(s) 143
Hin1II CATG 3 cut(s) 353, 460, 652
HincII GTYRAC 1 cut(s) 325
HindII GTYRAC 1 cut(s) 325
HinfI GANTC 5 cut(s) 271, 326, 768, 901, 962
HpaII CCGG 3 cut(s) 162, 282, 642
HphI GGTGA 4 cut(s) 65, 383, 728, 833
Hpy166II GTNNAC 2 cut(s) 325, 695
Hpy188I TCNGA 4 cut(s) 138, 861, 900, 934
Hpy188III TCNNGA 5 cut(s) 65, 334, 597, 671, 999
Hpy8I GTNNAC 2 cut(s) 325, 695
Hpy99I CGWCG 6 cut(s) 142, 148, 238, 241, 268, 271
HpyAV CCTTC 3 cut(s) 826, 879, 883
HpyCH4III ACNGT 3 cut(s) 424, 677, 989
HpyCH4IV ACGT 1 cut(s) 354
HpyCH4V TGCA 8 cut(s) 4, 383, 398, 492, 503, 623, 731, 910
HpyF10VI GCNNNNNNNGC 2 cut(s) 140, 760
HpyF3I CTNAG 5 cut(s) 367, 530, 615, 925, 933
HpySE526I ACGT 1 cut(s) 354
Hsp92I GRCGYC 1 cut(s) 143
Hsp92II CATG 3 cut(s) 353, 460, 652
KflI GGGWCCC 1 cut(s) 116
KpnI GGTACC 1 cut(s) 513
Kzo9I GATC 7 cut(s) 165, 330, 453, 599, 638, 712, 883
LmnI GCTCC 4 cut(s) 67, 139, 476, 871
Lsp1109I GCAGC 2 cut(s) 143, 704
LweI GCATC 1 cut(s) 243
MaeI CTAG 2 cut(s) 102, 201
MaeII ACGT 1 cut(s) 354
MaeIII GTNAC 3 cut(s) 442, 523, 734
MalI GATC 7 cut(s) 167, 332, 455, 601, 640, 714, 885
MbiI CCGCTC 1 cut(s) 51
MboI GATC 7 cut(s) 165, 330, 453, 599, 638, 712, 883
MboII GAAGA 8 cut(s) 196, 199, 313, 463, 537, 769, 836, 968
MfeI CAATTG 1 cut(s) 789
MflI RGATCY 1 cut(s) 638
MhlI GDGCHC 1 cut(s) 481
MluCI AATT 4 cut(s) 25, 378, 789, 892
MlyI GAGTC 1 cut(s) 320
MmeI TCCRAC 2 cut(s) 161, 933
MnlI CCTC 9 cut(s) 4, 183, 239, 297, 305, 420, 430, 562, 952
MseI TTAA 1 cut(s) 560
MslI CAYNNNNRTG 2 cut(s) 348, 860
MspA1I CMGCKG 2 cut(s) 277, 742
MspI CCGG 3 cut(s) 162, 282, 642
MspR9I CCNGG 2 cut(s) 163, 298
MunI CAATTG 1 cut(s) 789
Mva1269I GAATGC 1 cut(s) 625
MvaI CCWGG 1 cut(s) 298
MwoI GCNNNNNNNGC 2 cut(s) 140, 760
NciI CCSGG 1 cut(s) 163
NdeI CATATG 1 cut(s) 565
NdeII GATC 7 cut(s) 165, 330, 453, 599, 638, 712, 883
NlaIII CATG 3 cut(s) 353, 460, 652
NlaIV GGNNCC 6 cut(s) 117, 118, 214, 511, 725, 867
NmuCI GTSAC 1 cut(s) 734
PaeR7I CTCGAG 1 cut(s) 480
PceI AGGCCT 1 cut(s) 199
PcsI WCGNNNNNNNCGW 1 cut(s) 146
PctI GAATGC 1 cut(s) 625
PfeI GAWTC 4 cut(s) 271, 768, 901, 962
PflFI GACNNNGTC 1 cut(s) 142
PkrI GCNGC 4 cut(s) 130, 133, 575, 719
Ple19I CGATCG 1 cut(s) 715
PleI GAGTC 1 cut(s) 320
PpsI GAGTC 1 cut(s) 320
PpuMI RGGWCCY 1 cut(s) 116
Psp124BI GAGCTC 1 cut(s) 481
Psp5II RGGWCCY 1 cut(s) 116
Psp6I CCWGG 1 cut(s) 296
PspEI GGTNACC 1 cut(s) 734
PspGI CCWGG 1 cut(s) 296
PspN4I GGNNCC 6 cut(s) 117, 118, 214, 511, 725, 867
PspPI GGNCC 5 cut(s) 116, 212, 571, 668, 723
PspPPI RGGWCCY 1 cut(s) 116
PspXI VCTCGAGB 1 cut(s) 480
PstNI CAGNNNCTG 1 cut(s) 932
PsuI RGATCY 1 cut(s) 638
PsyI GACNNNGTC 1 cut(s) 142
PvuI CGATCG 1 cut(s) 715
PvuII CAGCTG 1 cut(s) 742
RsaI GTAC 4 cut(s) 172, 209, 511, 556
RsaNI GTAC 4 cut(s) 171, 208, 510, 555
RseI CAYNNNNRTG 2 cut(s) 348, 860
SacI GAGCTC 1 cut(s) 481
SaqAI TTAA 1 cut(s) 560
SatI GCNGC 4 cut(s) 129, 132, 574, 718
Sau3AI GATC 7 cut(s) 165, 330, 453, 599, 638, 712, 883
Sau96I GGNCC 5 cut(s) 116, 212, 571, 668, 723
SchI GAGTC 1 cut(s) 320
ScrFI CCNGG 2 cut(s) 163, 298
SduI GDGCHC 1 cut(s) 481
SfaNI GCATC 1 cut(s) 243
Sfr274I CTCGAG 1 cut(s) 480
SinI GGWCC 3 cut(s) 116, 212, 668
SlaI CTCGAG 1 cut(s) 480
SmiMI CAYNNNNRTG 2 cut(s) 348, 860
SmlI CTYRAG 1 cut(s) 480
SmoI CTYRAG 1 cut(s) 480
Sse9I AATT 4 cut(s) 25, 378, 789, 892
SseBI AGGCCT 1 cut(s) 199
SsiI CCGC 6 cut(s) 51, 128, 275, 294, 574, 843
SspMI CTAG 2 cut(s) 102, 201
SstI GAGCTC 1 cut(s) 481
StuI AGGCCT 1 cut(s) 199
StyD4I CCNGG 2 cut(s) 161, 296
StyI CCWWGG 1 cut(s) 200
TaaI ACNGT 3 cut(s) 424, 677, 989
TaiI ACGT 1 cut(s) 357
TaqI TCGA 5 cut(s) 269, 329, 481, 711, 771
TasI AATT 4 cut(s) 25, 378, 789, 892
TauI GCSGC 2 cut(s) 131, 576
TfiI GAWTC 4 cut(s) 271, 768, 901, 962
Tru1I TTAA 1 cut(s) 560
Tru9I TTAA 1 cut(s) 560
TscAI CASTG 1 cut(s) 51
TseFI GTSAC 1 cut(s) 734
TseI GCWGC 2 cut(s) 131, 717
Tsp45I GTSAC 1 cut(s) 734
TspDTI ATGAA 3 cut(s) 108, 464, 845
TspGWI ACGGA 3 cut(s) 188, 225, 894
TspRI CASTG 1 cut(s) 51
Tth111I GACNNNGTC 1 cut(s) 142
VpaK11BI GGWCC 3 cut(s) 116, 212, 668
XagI CCTNNNNNAGG 1 cut(s) 301
XapI RAATTY 1 cut(s) 25
XhoI CTCGAG 1 cut(s) 480
XmaJI CCTAGG 1 cut(s) 200
XspI CTAG 2 cut(s) 102, 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.