Rh1AG399200

AT-hook motif nuclear-localized protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0012862
Physical Location & Seq
Reverse (-)
62643728 .. 62646802
3075 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG399200.1

Sequence Viewer

Length: 744 bp
ATGGAGGAGAAAGACAGCTTGATGGTTTCTGGAGTTGCAGTGAGCAGTGAGCAATCTCAAGATATTTACAGGATTGCCCCCAGAACTGAAATCCCTCTCCAATCTGTTGTGGGTCCTACAATGGCTGCGGCGGCGGCAGCTACGGCGTCGCCGATGAGCTCGGCCTTGACTACCACCGCCGGCGGGACAGATTCTCTGAAGAAGAAGAGGGGCAGACCCAGAAAGTACGGAGCGGACAAGACCTCGCCGGCGTCGGCGTTGTCTCCGATGCCGATTTCGTCTTCGGTGCCGCTCACCGGAGAGTTCTCGGCTTGGAAACGAGGCCGGGGGCGGCCCGTTGACTCGGTCAAGAAGTCTTCACACAAGTATGACGTCTTTGAGAGCTCATCAGATTCCATGTCAGATCTGGTACTTGTGGTGAAGAAGGGATCTGCTGATGTTGTGGTGGGAAGTTTTCTACCAGGTCACCAGCAGGAACACAACAAGCCCAAGAAGCAGAGAATCGAGTCAGGATCATCACCGATTGTCCCTATCATTGTCAACTCTGTGACTGGTGAAGAAATAAAGGGCTATAGTGGATTAAAACCCATCATGATGACTACTTCCTTCCACGGAGACAATTCGAATTCTCTGAGCCACCCGATGCATCAGAACTTTAAAAATTCAACTCCTGAGAATAACTCATTGGTAGCAGAAGAAGACTCCAAAGGCTCTGGCCAATCAAACTGTGAAGTTTCTTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF296

Protein Analysis

247

Amino Acids

26.16

Weight (kDa)

8.77

Isoelectric Point (pI)

58.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012862)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G62260 AT5G62260 AT5G62260
fragaria_vesca FvH4_7g28180
malus_domestica MD01G1185700.v1.1 MD07G1257800.v1.1
prunus_persica Prupe.2G282300_v2.0.a1
pyrus_communis pycom07g23090
rosa_chinensis RchiOBHm_Chr1g0375131
rosa_laevigata RLG00000026684
rosa_multiflora Rmu_sc0000554.1_g000021
rosa_roxburghii Rroxscaffold_4G00282990
rosa_rugosa Rorug01G0388700
rosa_samantha Rh1AG399200 Rh1BG365300 Rh1CG378200 Rh1DG396000
rosa_wichuraiana Rw1G035440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 375
AccB1I GGYRCC 1 cut(s) 286
AccBSI CCGCTC 2 cut(s) 233, 292
AciI CCGC 8 cut(s) 128, 131, 134, 177, 183, 233, 290, 331
AclWI GGATC 2 cut(s) 436, 520
AcoI YGGCCR 1 cut(s) 715
AcsI RAATTY 2 cut(s) 625, 661
AcuI CTGAAG 1 cut(s) 218
AcyI GRCGYC 3 cut(s) 146, 251, 372
AfaI GTAC 2 cut(s) 227, 411
AfiI CCNNNNNNNGG 2 cut(s) 183, 296
AgsI TTSAA 1 cut(s) 666
AjnI CCWGG 1 cut(s) 460
AjuI GAANNNNNNNTTGG 2 cut(s) 668, 700
AluBI AGCT 4 cut(s) 18, 140, 159, 384
AluI AGCT 4 cut(s) 18, 140, 159, 384
Alw21I GWGCWC 2 cut(s) 161, 386
Alw26I GTCTC 2 cut(s) 267, 609
AlwI GGATC 2 cut(s) 436, 520
AoxI GGCC 4 cut(s) 162, 322, 332, 715
ApeKI GCWGC 2 cut(s) 125, 137
ApoI RAATTY 2 cut(s) 625, 661
AspS9I GGNCC 2 cut(s) 113, 333
AsuC2I CCSGG 1 cut(s) 326
AsuHPI GGTGA 5 cut(s) 286, 430, 458, 510, 566
AsuII TTCGAA 1 cut(s) 623
AvaII GGWCC 1 cut(s) 113
BalI TGGCCA 1 cut(s) 717
BanI GGYRCC 1 cut(s) 286
BanII GRGCYC 2 cut(s) 161, 386
BbsI GAAGAC 3 cut(s) 273, 348, 705
Bbv12I GWGCWC 2 cut(s) 161, 386
BbvI GCAGC 2 cut(s) 112, 149
BccI CCATC 2 cut(s) 16, 596
BceAI ACGGC 1 cut(s) 159
BciT130I CCWGG 1 cut(s) 462
BcnI CCSGG 1 cut(s) 326
BcoDI GTCTC 2 cut(s) 267, 609
BfmI CTRYAG 1 cut(s) 571
BglII AGATCT 1 cut(s) 403
BisI GCNGC 7 cut(s) 126, 129, 132, 135, 138, 290, 332
BlsI GCNGC 7 cut(s) 127, 130, 133, 136, 139, 291, 333
Bme1390I CCNGG 2 cut(s) 326, 462
Bme18I GGWCC 1 cut(s) 113
BmgT120I GGNCC 2 cut(s) 113, 333
BmiI GGNNCC 2 cut(s) 114, 288
BmrFI CCNGG 2 cut(s) 326, 462
BmsI GCATC 3 cut(s) 258, 633, 655
BpiI GAAGAC 3 cut(s) 273, 348, 705
BplI GAGNNNNNCTC 2 cut(s) 665, 697
BpmI CTGGAG 1 cut(s) 51
Bpu14I TTCGAA 1 cut(s) 623
BpuEI CTTGAG 1 cut(s) 42
BpuMI CCSGG 1 cut(s) 326
BsaHI GRCGYC 3 cut(s) 146, 251, 372
BsaJI CCNNGG 2 cut(s) 325, 610
BsaWI WCCGGW 1 cut(s) 296
BsaXI ACNNNNNCTCC 2 cut(s) 24, 54
Bsc4I CCNNNNNNNGG 2 cut(s) 183, 296
Bse118I RCCGGY 2 cut(s) 179, 247
Bse1I ACTGG 1 cut(s) 556
BseBI CCWGG 1 cut(s) 462
BseDI CCNNGG 2 cut(s) 325, 610
BseLI CCNNNNNNNGG 2 cut(s) 183, 296
BseMII CTCAG 2 cut(s) 623, 663
BseNI ACTGG 1 cut(s) 556
BseRI GAGGAG 1 cut(s) 20
BseXI GCAGC 2 cut(s) 112, 149
BshFI GGCC 4 cut(s) 164, 324, 334, 717
BshNI GGYRCC 1 cut(s) 286
BsiHKAI GWGCWC 2 cut(s) 161, 386
BsiSI CCGG 4 cut(s) 180, 248, 297, 325
BslFI GGGAC 2 cut(s) 199, 512
BslI CCNNNNNNNGG 2 cut(s) 183, 296
BsmAI GTCTC 2 cut(s) 267, 609
BsmFI GGGAC 2 cut(s) 199, 512
BsnI GGCC 4 cut(s) 164, 324, 334, 717
Bsp119I TTCGAA 1 cut(s) 623
Bsp1286I GDGCHC 2 cut(s) 161, 386
Bsp143I GATC 3 cut(s) 403, 428, 512
BspACI CCGC 8 cut(s) 128, 131, 134, 177, 183, 233, 290, 331
BspANI GGCC 4 cut(s) 164, 324, 334, 717
BspCNI CTCAG 2 cut(s) 624, 664
BspHI TCATGA 1 cut(s) 591
BspLI GGNNCC 2 cut(s) 114, 288
BspPI GGATC 2 cut(s) 436, 520
BspT104I TTCGAA 1 cut(s) 623
BspT107I GGYRCC 1 cut(s) 286
BsrBI CCGCTC 2 cut(s) 233, 292
BsrFI RCCGGY 2 cut(s) 179, 247
BsrI ACTGG 1 cut(s) 556
BssAI RCCGGY 2 cut(s) 179, 247
BssECI CCNNGG 2 cut(s) 325, 610
BssMI GATC 3 cut(s) 403, 428, 512
BssNI GRCGYC 3 cut(s) 146, 251, 372
Bst2UI CCWGG 1 cut(s) 462
Bst4CI ACNGT 1 cut(s) 728
Bst6I CTCTTC 1 cut(s) 200
BstACI GRCGYC 3 cut(s) 146, 251, 372
BstBI TTCGAA 1 cut(s) 623
BstC8I GCNNGC 2 cut(s) 181, 249
BstDEI CTNAG 2 cut(s) 632, 672
BstDSI CCRYGG 1 cut(s) 610
BstEII GGTNACC 1 cut(s) 464
BstKTI GATC 3 cut(s) 406, 431, 515
BstMAI GTCTC 2 cut(s) 267, 609
BstMBI GATC 3 cut(s) 403, 428, 512
BstMWI GCNNNNNNNGC 5 cut(s) 131, 134, 137, 143, 493
BstNI CCWGG 1 cut(s) 462
BstPI GGTNACC 1 cut(s) 464
BstSCI CCNGG 2 cut(s) 324, 460
BstSFI CTRYAG 1 cut(s) 571
BstV1I GCAGC 2 cut(s) 112, 149
BstV2I GAAGAC 3 cut(s) 273, 348, 705
BstX2I RGATCY 2 cut(s) 403, 428
BstYI RGATCY 2 cut(s) 403, 428
BsuRI GGCC 4 cut(s) 164, 324, 334, 717
BtgI CCRYGG 1 cut(s) 610
BtsI GCAGTG 2 cut(s) 45, 52
BtsIMutI CAGTG 2 cut(s) 45, 52
Cac8I GCNNGC 2 cut(s) 181, 249
CciI TCATGA 1 cut(s) 591
Cfr10I RCCGGY 2 cut(s) 179, 247
Cfr13I GGNCC 2 cut(s) 113, 333
CseI GACGC 2 cut(s) 135, 240
CsiI ACCWGGT 1 cut(s) 460
Csp6I GTAC 2 cut(s) 226, 410
CviAII CATG 2 cut(s) 397, 592
CviQI GTAC 2 cut(s) 226, 410
DdeI CTNAG 2 cut(s) 632, 672
DpnI GATC 3 cut(s) 405, 430, 514
DpnII GATC 3 cut(s) 403, 428, 512
DraI TTTAAA 1 cut(s) 658
EaeI YGGCCR 1 cut(s) 715
Eam1104I CTCTTC 1 cut(s) 200
EarI CTCTTC 1 cut(s) 200
Ecl136II GAGCTC 2 cut(s) 159, 384
Eco24I GRGCYC 2 cut(s) 161, 386
Eco47I GGWCC 1 cut(s) 113
Eco53kI GAGCTC 2 cut(s) 159, 384
Eco57I CTGAAG 1 cut(s) 218
Eco91I GGTNACC 1 cut(s) 464
EcoICRI GAGCTC 2 cut(s) 159, 384
EcoO109I RGGNCCY 1 cut(s) 113
EcoO65I GGTNACC 1 cut(s) 464
EcoRI GAATTC 1 cut(s) 625
EcoRII CCWGG 1 cut(s) 460
EcoT22I ATGCAT 1 cut(s) 648
EcoT38I GRGCYC 2 cut(s) 161, 386
FaeI CATG 2 cut(s) 400, 595
FaiI YATR 4 cut(s) 369, 398, 573, 593
FaqI GGGAC 2 cut(s) 199, 512
FatI CATG 2 cut(s) 396, 591
FauI CCCGC 1 cut(s) 176
Fnu4HI GCNGC 7 cut(s) 126, 129, 132, 135, 138, 290, 332
FriOI GRGCYC 2 cut(s) 161, 386
Fsp4HI GCNGC 7 cut(s) 126, 129, 132, 135, 138, 290, 332
GluI GCNGC 7 cut(s) 126, 129, 132, 135, 138, 290, 332
GsuI CTGGAG 1 cut(s) 51
HaeIII GGCC 4 cut(s) 164, 324, 334, 717
HapII CCGG 4 cut(s) 180, 248, 297, 325
HgaI GACGC 2 cut(s) 135, 240
Hin1I GRCGYC 3 cut(s) 146, 251, 372
Hin1II CATG 2 cut(s) 400, 595
HincII GTYRAC 2 cut(s) 340, 541
HindII GTYRAC 2 cut(s) 340, 541
HinfI GANTC 6 cut(s) 191, 341, 392, 501, 506, 701
HpaII CCGG 4 cut(s) 180, 248, 297, 325
HphI GGTGA 5 cut(s) 286, 430, 458, 510, 566
Hpy166II GTNNAC 2 cut(s) 340, 541
Hpy188I TCNGA 6 cut(s) 198, 267, 391, 403, 633, 651
Hpy188III TCNNGA 6 cut(s) 30, 59, 349, 510, 592, 671
Hpy8I GTNNAC 2 cut(s) 340, 541
Hpy99I CGWCG 2 cut(s) 151, 256
HpyAV CCTTC 2 cut(s) 418, 616
HpyCH4III ACNGT 1 cut(s) 728
HpyCH4IV ACGT 1 cut(s) 372
HpyCH4V TGCA 2 cut(s) 38, 646
HpyF10VI GCNNNNNNNGC 5 cut(s) 131, 134, 137, 143, 493
HpyF3I CTNAG 2 cut(s) 632, 672
HpySE526I ACGT 1 cut(s) 372
Hsp92I GRCGYC 3 cut(s) 146, 251, 372
Hsp92II CATG 2 cut(s) 400, 595
KroI GCCGGC 2 cut(s) 179, 247
KroNI GCCGGC 2 cut(s) 181, 249
Kzo9I GATC 3 cut(s) 403, 428, 512
LmnI GCTCC 1 cut(s) 230
Lsp1109I GCAGC 2 cut(s) 112, 149
LweI GCATC 3 cut(s) 258, 633, 655
MabI ACCWGGT 1 cut(s) 460
MaeII ACGT 1 cut(s) 372
MaeIII GTNAC 2 cut(s) 464, 547
MalI GATC 3 cut(s) 405, 430, 514
MbiI CCGCTC 2 cut(s) 233, 292
MboI GATC 3 cut(s) 403, 428, 512
MboII GAAGA 9 cut(s) 211, 214, 217, 273, 348, 433, 569, 707, 710
MflI RGATCY 2 cut(s) 403, 428
MhlI GDGCHC 2 cut(s) 161, 386
MlsI TGGCCA 1 cut(s) 717
MluCI AATT 3 cut(s) 619, 625, 661
MluNI TGGCCA 1 cut(s) 717
MlyI GAGTC 3 cut(s) 335, 515, 695
MnlI CCTC 4 cut(s) 105, 201, 253, 314
Mox20I TGGCCA 1 cut(s) 717
Mph1103I ATGCAT 1 cut(s) 648
MreI CGCCGGCG 2 cut(s) 179, 247
MroNI GCCGGC 2 cut(s) 179, 247
MscI TGGCCA 1 cut(s) 717
MseI TTAA 2 cut(s) 581, 657
MslI CAYNNNNRTG 2 cut(s) 366, 593
Msp20I TGGCCA 1 cut(s) 717
MspI CCGG 4 cut(s) 180, 248, 297, 325
MspR9I CCNGG 2 cut(s) 326, 462
MvaI CCWGG 1 cut(s) 462
MwoI GCNNNNNNNGC 5 cut(s) 131, 134, 137, 143, 493
NaeI GCCGGC 2 cut(s) 181, 249
NciI CCSGG 1 cut(s) 326
NdeII GATC 3 cut(s) 403, 428, 512
NgoMIV GCCGGC 2 cut(s) 179, 247
NlaIII CATG 2 cut(s) 400, 595
NlaIV GGNNCC 2 cut(s) 114, 288
NmeAIII GCCGAG 2 cut(s) 140, 287
NmuCI GTSAC 2 cut(s) 464, 547
NsiI ATGCAT 1 cut(s) 648
NspV TTCGAA 1 cut(s) 623
PagI TCATGA 1 cut(s) 591
PcsI WCGNNNNNNNCGW 1 cut(s) 149
PdiI GCCGGC 2 cut(s) 181, 249
PfeI GAWTC 3 cut(s) 191, 392, 501
PflFI GACNNNGTC 1 cut(s) 344
PkrI GCNGC 7 cut(s) 127, 130, 133, 136, 139, 291, 333
PleI GAGTC 3 cut(s) 335, 514, 695
PpsI GAGTC 3 cut(s) 335, 514, 695
PpuMI RGGWCCY 1 cut(s) 113
Psp124BI GAGCTC 2 cut(s) 161, 386
Psp5II RGGWCCY 1 cut(s) 113
Psp6I CCWGG 1 cut(s) 460
PspEI GGTNACC 1 cut(s) 464
PspGI CCWGG 1 cut(s) 460
PspN4I GGNNCC 2 cut(s) 114, 288
PspPI GGNCC 2 cut(s) 113, 333
PspPPI RGGWCCY 1 cut(s) 113
PsuI RGATCY 2 cut(s) 403, 428
PsyI GACNNNGTC 1 cut(s) 344
RsaI GTAC 2 cut(s) 227, 411
RsaNI GTAC 2 cut(s) 226, 410
RseI CAYNNNNRTG 2 cut(s) 366, 593
SacI GAGCTC 2 cut(s) 161, 386
SaqAI TTAA 2 cut(s) 581, 657
SatI GCNGC 7 cut(s) 126, 129, 132, 135, 138, 290, 332
Sau3AI GATC 3 cut(s) 403, 428, 512
Sau96I GGNCC 2 cut(s) 113, 333
SchI GAGTC 3 cut(s) 335, 515, 695
ScrFI CCNGG 2 cut(s) 326, 462
SduI GDGCHC 2 cut(s) 161, 386
SetI ASST 7 cut(s) 20, 142, 161, 245, 375, 386, 466
SexAI ACCWGGT 1 cut(s) 460
SfaNI GCATC 3 cut(s) 258, 633, 655
SfcI CTRYAG 1 cut(s) 571
SfuI TTCGAA 1 cut(s) 623
SgrAI CRCCGGYG 2 cut(s) 179, 247
SinI GGWCC 1 cut(s) 113
SmiMI CAYNNNNRTG 2 cut(s) 366, 593
SmlI CTYRAG 1 cut(s) 57
SmoI CTYRAG 1 cut(s) 57
Sse9I AATT 3 cut(s) 619, 625, 661
SsiI CCGC 8 cut(s) 128, 131, 134, 177, 183, 233, 290, 331
SstI GAGCTC 2 cut(s) 161, 386
StyD4I CCNGG 2 cut(s) 324, 460
TaaI ACNGT 1 cut(s) 728
TaiI ACGT 1 cut(s) 375
TaqI TCGA 2 cut(s) 504, 623
TaqII GACCGA 1 cut(s) 334
TasI AATT 3 cut(s) 619, 625, 661
TauI GCSGC 5 cut(s) 131, 134, 137, 292, 334
TfiI GAWTC 3 cut(s) 191, 392, 501
Tru1I TTAA 2 cut(s) 581, 657
Tru9I TTAA 2 cut(s) 581, 657
TscAI CASTG 2 cut(s) 45, 52
TseFI GTSAC 2 cut(s) 464, 547
TseI GCWGC 2 cut(s) 125, 137
Tsp45I GTSAC 2 cut(s) 464, 547
TspGWI ACGGA 2 cut(s) 243, 627
TspRI CASTG 2 cut(s) 45, 52
Tth111I GACNNNGTC 1 cut(s) 344
VpaK11BI GGWCC 1 cut(s) 113
XapI RAATTY 2 cut(s) 625, 661
XcmI CCANNNNNNNNNTGG 1 cut(s) 403
ZraI GACGTC 1 cut(s) 373
Zsp2I ATGCAT 1 cut(s) 648
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.