RLG00000026684

AT-hook motif nuclear-localized protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0012862
Physical Location & Seq
Forward (+)
5028008 .. 5031910
3903 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026684

Sequence Viewer

Length: 1059 bp
ATGGAGGAGAAAGACAGCTTGATGGTTTCTGGAGTTGCTGTGAGCAGTGACCAATCTCAAGATATTTACAGGATTGCCCCCAGAACTGAAATCCCTCCCCAATCTGTTGTGGGTCCTACAATGGCTGCGGCGGCGACAGGTACGGCGTCGCCGATGAGCTCGGCCTTGACCACCACCGCCGGCGGCACAGATTCTCTGAAGAAGAAGAGGGGCAGACCCAGAAAGTACGGAGCCGACAAGACCTCGCCGGCGTCGGCGTTGTCTCCGATGCCGATTTCGTCTTCGGTGCCACTCACCGGAGAGTTCTCGGCTTGGAAACGAGGCCGGGGCCGGCCCGTTGACTCGGTCAAGAAGTCTTCACACAAGTATGACGTCTTTGAGAGCTCATCAGGTGAGAAACTTGCATACTCTGTTGGCGCAAATTTTACACCTCATATCCTTACCGTCAATACTGGCGAGGATGTTACGATGAAGATTATGACATTCTCTCAACAAGGATCTCGTGCTATTTGCATACTTTCTGCAAATGGTACCATATCAAATGTCACACTTCGACAGCCCAGTACTTCTGGAGGTACTTTAACATATGAGGGCCGATTTGAGATACTTTCATTGTCTGGATCATATATGCCAACTGAGAATGCAGGAACAAAGAGCAGGTCAGGTGGCATGAGTGTCTCTTTGGCAGGTCCAGATGGTAGGGTTGTTGGAGGAGGACTGGCTGGTCTATTGATAGCTGCAGGACCTGTGCAGGTTGTGGTGGGAAGTTTTCTACCAGGTCACCAGCAGGAACACAACAAGCCCAAGAAGCAGAGAATCGAGTCAGGATCATCACCGATTGTCCCTATCATTGTCAACTCCGTGACTGGTGAAGAAATAAAGGGCTATAGTGGATTAAAACCCATCATGATGACTACTTCCTTCCACGGAGACAATTCGAATTCTCTGAGCCACCCGATGCAACAGAACTTTAAAAATTCAACTCCTGAGAATAACTCATTGGTAGCAGAAGAAGACTCCAAAGGCTCTGGCCAATCAAACTGTGAAGTTTCTTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF296

Protein Analysis

353

Amino Acids

36.78

Weight (kDa)

9.01

Isoelectric Point (pI)

51.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PCC PF03479 143 - 257 2e-27 Plants and Prokaryotes Conserved (PCC) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012862)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G62260 AT5G62260 AT5G62260
fragaria_vesca FvH4_7g28180
malus_domestica MD01G1185700.v1.1 MD07G1257800.v1.1
prunus_persica Prupe.2G282300_v2.0.a1
pyrus_communis pycom07g23090
rosa_chinensis RchiOBHm_Chr1g0375131
rosa_laevigata RLG00000026684
rosa_multiflora Rmu_sc0000554.1_g000021
rosa_roxburghii Rroxscaffold_4G00282990
rosa_rugosa Rorug01G0388700
rosa_samantha Rh1AG399200 Rh1BG365300 Rh1CG378200 Rh1DG396000
rosa_wichuraiana Rw1G035440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 723
AatII GACGTC 1 cut(s) 375
Acc36I ACCTGC 3 cut(s) 648, 677, 742
Acc65I GGTACC 1 cut(s) 530
AccB1I GGYRCC 2 cut(s) 286, 530
AciI CCGC 4 cut(s) 128, 131, 177, 183
AclWI GGATC 3 cut(s) 505, 628, 835
AcoI YGGCCR 1 cut(s) 1030
AcsI RAATTY 3 cut(s) 421, 940, 976
AcuI CTGAAG 1 cut(s) 218
AcyI GRCGYC 3 cut(s) 146, 251, 372
AfaI GTAC 5 cut(s) 142, 227, 532, 565, 577
AfiI CCNNNNNNNGG 1 cut(s) 296
AgsI TTSAA 1 cut(s) 981
AjnI CCWGG 1 cut(s) 775
AjuI GAANNNNNNNTTGG 2 cut(s) 983, 1015
AluBI AGCT 4 cut(s) 18, 159, 384, 737
AluI AGCT 4 cut(s) 18, 159, 384, 737
Alw21I GWGCWC 2 cut(s) 161, 386
Alw26I GTCTC 3 cut(s) 267, 682, 924
AlwI GGATC 3 cut(s) 505, 628, 835
AlwNI CAGNNNCTG 1 cut(s) 746
AoxI GGCC 6 cut(s) 162, 322, 328, 332, 592, 1030
ApeKI GCWGC 2 cut(s) 125, 737
ApoI RAATTY 3 cut(s) 421, 940, 976
ArsI GACNNNNNNTTYG 2 cut(s) 644, 676
Asp718I GGTACC 1 cut(s) 530
AspLEI GCGC 1 cut(s) 419
AspS9I GGNCC 6 cut(s) 113, 328, 333, 592, 689, 743
AsuC2I CCSGG 1 cut(s) 326
AsuHPI GGTGA 5 cut(s) 286, 404, 773, 825, 881
AsuII TTCGAA 1 cut(s) 938
AvaII GGWCC 3 cut(s) 113, 689, 743
BalI TGGCCA 1 cut(s) 1032
BanI GGYRCC 2 cut(s) 286, 530
BanII GRGCYC 2 cut(s) 161, 386
BauI CACGAG 1 cut(s) 501
BbsI GAAGAC 3 cut(s) 273, 348, 1020
Bbv12I GWGCWC 2 cut(s) 161, 386
BbvI GCAGC 2 cut(s) 112, 724
BccI CCATC 3 cut(s) 16, 689, 911
BceAI ACGGC 1 cut(s) 159
BciT130I CCWGG 1 cut(s) 777
BcnI CCSGG 1 cut(s) 326
BcoDI GTCTC 3 cut(s) 267, 682, 924
BfmI CTRYAG 2 cut(s) 738, 886
BfuAI ACCTGC 3 cut(s) 648, 677, 742
BisI GCNGC 5 cut(s) 126, 129, 132, 184, 738
BlsI GCNGC 5 cut(s) 127, 130, 133, 185, 739
BmcAI AGTACT 1 cut(s) 565
Bme1390I CCNGG 2 cut(s) 326, 777
Bme18I GGWCC 3 cut(s) 113, 689, 743
BmgT120I GGNCC 6 cut(s) 113, 328, 333, 592, 689, 743
BmiI GGNNCC 5 cut(s) 114, 232, 288, 329, 532
BmrFI CCNGG 2 cut(s) 326, 777
BmrI ACTGGG 1 cut(s) 555
BmsI GCATC 2 cut(s) 258, 948
BmuI ACTGGG 1 cut(s) 555
BpiI GAAGAC 3 cut(s) 273, 348, 1020
BplI GAGNNNNNCTC 2 cut(s) 980, 1012
BpmI CTGGAG 2 cut(s) 51, 591
Bpu14I TTCGAA 1 cut(s) 938
BpuEI CTTGAG 1 cut(s) 42
BpuMI CCSGG 1 cut(s) 326
BsaHI GRCGYC 3 cut(s) 146, 251, 372
BsaJI CCNNGG 2 cut(s) 325, 925
BsaWI WCCGGW 1 cut(s) 296
BsaXI ACNNNNNCTCC 2 cut(s) 24, 54
Bsc4I CCNNNNNNNGG 1 cut(s) 296
Bse118I RCCGGY 3 cut(s) 179, 247, 330
Bse1I ACTGG 4 cut(s) 457, 561, 723, 871
BseBI CCWGG 1 cut(s) 777
BseDI CCNNGG 2 cut(s) 325, 925
BseGI GGATG 1 cut(s) 466
BseLI CCNNNNNNNGG 1 cut(s) 296
BseMII CTCAG 3 cut(s) 627, 938, 978
BseNI ACTGG 4 cut(s) 457, 561, 723, 871
BseRI GAGGAG 2 cut(s) 20, 726
BseXI GCAGC 2 cut(s) 112, 724
BsgI GTGCAG 1 cut(s) 770
BshFI GGCC 6 cut(s) 164, 324, 330, 334, 594, 1032
BshNI GGYRCC 2 cut(s) 286, 530
BsiHKAI GWGCWC 2 cut(s) 161, 386
BsiSI CCGG 5 cut(s) 180, 248, 297, 325, 331
BslFI GGGAC 1 cut(s) 827
BslI CCNNNNNNNGG 1 cut(s) 296
BsmAI GTCTC 3 cut(s) 267, 682, 924
BsmFI GGGAC 1 cut(s) 827
BsmI GAATGC 1 cut(s) 646
BsnI GGCC 6 cut(s) 164, 324, 330, 334, 594, 1032
Bsp119I TTCGAA 1 cut(s) 938
Bsp1286I GDGCHC 2 cut(s) 161, 386
Bsp143I GATC 3 cut(s) 497, 620, 827
BspACI CCGC 4 cut(s) 128, 131, 177, 183
BspANI GGCC 6 cut(s) 164, 324, 330, 334, 594, 1032
BspCNI CTCAG 3 cut(s) 628, 939, 979
BspHI TCATGA 1 cut(s) 906
BspLI GGNNCC 5 cut(s) 114, 232, 288, 329, 532
BspMAI CTGCAG 1 cut(s) 742
BspMI ACCTGC 3 cut(s) 648, 677, 742
BspPI GGATC 3 cut(s) 505, 628, 835
BspT104I TTCGAA 1 cut(s) 938
BspT107I GGYRCC 2 cut(s) 286, 530
BsrFI RCCGGY 3 cut(s) 179, 247, 330
BsrI ACTGG 4 cut(s) 457, 561, 723, 871
BssAI RCCGGY 3 cut(s) 179, 247, 330
BssECI CCNNGG 2 cut(s) 325, 925
BssMI GATC 3 cut(s) 497, 620, 827
BssNI GRCGYC 3 cut(s) 146, 251, 372
BssSI CACGAG 1 cut(s) 501
Bst2BI CACGAG 1 cut(s) 501
Bst2UI CCWGG 1 cut(s) 777
Bst4CI ACNGT 2 cut(s) 445, 1043
Bst6I CTCTTC 1 cut(s) 200
BstACI GRCGYC 3 cut(s) 146, 251, 372
BstBI TTCGAA 1 cut(s) 938
BstC8I GCNNGC 3 cut(s) 181, 249, 332
BstDEI CTNAG 3 cut(s) 636, 947, 987
BstDSI CCRYGG 1 cut(s) 925
BstEII GGTNACC 1 cut(s) 779
BstF5I GGATG 1 cut(s) 466
BstHHI GCGC 1 cut(s) 419
BstKTI GATC 3 cut(s) 500, 623, 830
BstMAI GTCTC 3 cut(s) 267, 682, 924
BstMBI GATC 3 cut(s) 497, 620, 827
BstMWI GCNNNNNNNGC 2 cut(s) 131, 808
BstNI CCWGG 1 cut(s) 777
BstPI GGTNACC 1 cut(s) 779
BstSCI CCNGG 2 cut(s) 324, 775
BstSFI CTRYAG 2 cut(s) 738, 886
BstV1I GCAGC 2 cut(s) 112, 724
BstV2I GAAGAC 3 cut(s) 273, 348, 1020
BstX2I RGATCY 1 cut(s) 497
BstYI RGATCY 1 cut(s) 497
BsuRI GGCC 6 cut(s) 164, 324, 330, 334, 594, 1032
BtgI CCRYGG 1 cut(s) 925
BtsCI GGATG 1 cut(s) 466
BtsI GCAGTG 1 cut(s) 52
BtsIMutI CAGTG 1 cut(s) 52
BveI ACCTGC 3 cut(s) 648, 677, 742
Cac8I GCNNGC 3 cut(s) 181, 249, 332
CaiI CAGNNNCTG 1 cut(s) 746
CciI TCATGA 1 cut(s) 906
CfoI GCGC 1 cut(s) 419
Cfr10I RCCGGY 3 cut(s) 179, 247, 330
Cfr13I GGNCC 6 cut(s) 113, 328, 333, 592, 689, 743
CseI GACGC 2 cut(s) 135, 240
CsiI ACCWGGT 1 cut(s) 775
Csp6I GTAC 5 cut(s) 141, 226, 531, 564, 576
CviAII CATG 2 cut(s) 670, 907
CviQI GTAC 5 cut(s) 141, 226, 531, 564, 576
DdeI CTNAG 3 cut(s) 636, 947, 987
DpnI GATC 3 cut(s) 499, 622, 829
DpnII GATC 3 cut(s) 497, 620, 827
DraI TTTAAA 1 cut(s) 973
DrdI GACNNNNNNGTC 1 cut(s) 723
DseDI GACNNNNNNGTC 1 cut(s) 723
EaeI YGGCCR 1 cut(s) 1030
Eam1104I CTCTTC 1 cut(s) 200
EarI CTCTTC 1 cut(s) 200
Ecl136II GAGCTC 2 cut(s) 159, 384
Eco24I GRGCYC 2 cut(s) 161, 386
Eco47I GGWCC 3 cut(s) 113, 689, 743
Eco53kI GAGCTC 2 cut(s) 159, 384
Eco57I CTGAAG 1 cut(s) 218
Eco91I GGTNACC 1 cut(s) 779
EcoICRI GAGCTC 2 cut(s) 159, 384
EcoO109I RGGNCCY 2 cut(s) 113, 743
EcoO65I GGTNACC 1 cut(s) 779
EcoRI GAATTC 1 cut(s) 940
EcoRII CCWGG 1 cut(s) 775
EcoT38I GRGCYC 2 cut(s) 161, 386
FaeI CATG 2 cut(s) 673, 910
FaqI GGGAC 1 cut(s) 827
FatI CATG 2 cut(s) 669, 906
FauNDI CATATG 1 cut(s) 586
Fnu4HI GCNGC 5 cut(s) 126, 129, 132, 184, 738
FokI GGATG 1 cut(s) 473
FriOI GRGCYC 2 cut(s) 161, 386
FseI GGCCGGCC 1 cut(s) 334
Fsp4HI GCNGC 5 cut(s) 126, 129, 132, 184, 738
GlaI GCGC 1 cut(s) 418
GluI GCNGC 5 cut(s) 126, 129, 132, 184, 738
GsuI CTGGAG 2 cut(s) 51, 591
HaeIII GGCC 6 cut(s) 164, 324, 330, 334, 594, 1032
HapII CCGG 5 cut(s) 180, 248, 297, 325, 331
HgaI GACGC 2 cut(s) 135, 240
HhaI GCGC 1 cut(s) 419
Hin1I GRCGYC 3 cut(s) 146, 251, 372
Hin1II CATG 2 cut(s) 673, 910
Hin6I GCGC 1 cut(s) 417
HinP1I GCGC 1 cut(s) 417
HincII GTYRAC 2 cut(s) 340, 856
HindII GTYRAC 2 cut(s) 340, 856
HinfI GANTC 5 cut(s) 191, 341, 816, 821, 1016
HpaII CCGG 5 cut(s) 180, 248, 297, 325, 331
HphI GGTGA 5 cut(s) 286, 404, 773, 825, 881
Hpy166II GTNNAC 2 cut(s) 340, 856
Hpy188I TCNGA 3 cut(s) 198, 267, 948
Hpy188III TCNNGA 9 cut(s) 30, 59, 349, 570, 618, 692, 825, 907, 986
Hpy8I GTNNAC 2 cut(s) 340, 856
Hpy99I CGWCG 2 cut(s) 151, 256
HpyAV CCTTC 1 cut(s) 931
HpyCH4III ACNGT 2 cut(s) 445, 1043
HpyCH4IV ACGT 1 cut(s) 372
HpyCH4V TGCA 7 cut(s) 404, 513, 524, 644, 740, 751, 961
HpyF10VI GCNNNNNNNGC 2 cut(s) 131, 808
HpyF3I CTNAG 3 cut(s) 636, 947, 987
HpySE526I ACGT 1 cut(s) 372
Hsp92I GRCGYC 3 cut(s) 146, 251, 372
Hsp92II CATG 2 cut(s) 673, 910
HspAI GCGC 1 cut(s) 417
KpnI GGTACC 1 cut(s) 534
KroI GCCGGC 3 cut(s) 179, 247, 330
KroNI GCCGGC 3 cut(s) 181, 249, 332
Kzo9I GATC 3 cut(s) 497, 620, 827
LmnI GCTCC 1 cut(s) 230
Lsp1109I GCAGC 2 cut(s) 112, 724
LweI GCATC 2 cut(s) 258, 948
MabI ACCWGGT 1 cut(s) 775
MaeII ACGT 1 cut(s) 372
MaeIII GTNAC 5 cut(s) 47, 463, 544, 779, 862
MalI GATC 3 cut(s) 499, 622, 829
MboI GATC 3 cut(s) 497, 620, 827
MboII GAAGA 9 cut(s) 211, 214, 217, 273, 348, 484, 884, 1022, 1025
MflI RGATCY 1 cut(s) 497
MhlI GDGCHC 2 cut(s) 161, 386
MlsI TGGCCA 1 cut(s) 1032
MluCI AATT 4 cut(s) 421, 934, 940, 976
MluNI TGGCCA 1 cut(s) 1032
MlyI GAGTC 3 cut(s) 335, 830, 1010
MmeI TCCRAC 1 cut(s) 688
Mox20I TGGCCA 1 cut(s) 1032
MreI CGCCGGCG 2 cut(s) 179, 247
MroNI GCCGGC 3 cut(s) 179, 247, 330
MscI TGGCCA 1 cut(s) 1032
MseI TTAA 3 cut(s) 581, 896, 972
MslI CAYNNNNRTG 2 cut(s) 366, 908
Msp20I TGGCCA 1 cut(s) 1032
MspI CCGG 5 cut(s) 180, 248, 297, 325, 331
MspR9I CCNGG 2 cut(s) 326, 777
Mva1269I GAATGC 1 cut(s) 646
MvaI CCWGG 1 cut(s) 777
MwoI GCNNNNNNNGC 2 cut(s) 131, 808
NaeI GCCGGC 3 cut(s) 181, 249, 332
NciI CCSGG 1 cut(s) 326
NdeI CATATG 1 cut(s) 586
NdeII GATC 3 cut(s) 497, 620, 827
NgoMIV GCCGGC 3 cut(s) 179, 247, 330
NlaIII CATG 2 cut(s) 673, 910
NlaIV GGNNCC 5 cut(s) 114, 232, 288, 329, 532
NmeAIII GCCGAG 2 cut(s) 140, 287
NmuCI GTSAC 4 cut(s) 47, 544, 779, 862
NspV TTCGAA 1 cut(s) 938
PagI TCATGA 1 cut(s) 906
PcsI WCGNNNNNNNCGW 1 cut(s) 149
PctI GAATGC 1 cut(s) 646
PdiI GCCGGC 3 cut(s) 181, 249, 332
PfeI GAWTC 2 cut(s) 191, 816
PflFI GACNNNGTC 1 cut(s) 344
PkrI GCNGC 5 cut(s) 127, 130, 133, 185, 739
PleI GAGTC 3 cut(s) 335, 829, 1010
PpsI GAGTC 3 cut(s) 335, 829, 1010
PpuMI RGGWCCY 2 cut(s) 113, 743
Psp124BI GAGCTC 2 cut(s) 161, 386
Psp5II RGGWCCY 2 cut(s) 113, 743
Psp6I CCWGG 1 cut(s) 775
PspEI GGTNACC 1 cut(s) 779
PspGI CCWGG 1 cut(s) 775
PspN4I GGNNCC 5 cut(s) 114, 232, 288, 329, 532
PspPI GGNCC 6 cut(s) 113, 328, 333, 592, 689, 743
PspPPI RGGWCCY 2 cut(s) 113, 743
PstI CTGCAG 1 cut(s) 742
PstNI CAGNNNCTG 1 cut(s) 746
PsuI RGATCY 1 cut(s) 497
PsyI GACNNNGTC 1 cut(s) 344
RigI GGCCGGCC 1 cut(s) 334
RsaI GTAC 5 cut(s) 142, 227, 532, 565, 577
RsaNI GTAC 5 cut(s) 141, 226, 531, 564, 576
RseI CAYNNNNRTG 2 cut(s) 366, 908
SacI GAGCTC 2 cut(s) 161, 386
SaqAI TTAA 3 cut(s) 581, 896, 972
SatI GCNGC 5 cut(s) 126, 129, 132, 184, 738
Sau3AI GATC 3 cut(s) 497, 620, 827
Sau96I GGNCC 6 cut(s) 113, 328, 333, 592, 689, 743
ScaI AGTACT 1 cut(s) 565
SchI GAGTC 3 cut(s) 335, 830, 1010
ScrFI CCNGG 2 cut(s) 326, 777
SduI GDGCHC 2 cut(s) 161, 386
SexAI ACCWGGT 1 cut(s) 775
SfaNI GCATC 2 cut(s) 258, 948
SfcI CTRYAG 2 cut(s) 738, 886
SfuI TTCGAA 1 cut(s) 938
SgrAI CRCCGGYG 2 cut(s) 179, 247
SinI GGWCC 3 cut(s) 113, 689, 743
SmiMI CAYNNNNRTG 2 cut(s) 366, 908
SmlI CTYRAG 1 cut(s) 57
SmoI CTYRAG 1 cut(s) 57
Sse9I AATT 4 cut(s) 421, 934, 940, 976
SsiI CCGC 4 cut(s) 128, 131, 177, 183
SstI GAGCTC 2 cut(s) 161, 386
StyD4I CCNGG 2 cut(s) 324, 775
TaaI ACNGT 2 cut(s) 445, 1043
TaiI ACGT 1 cut(s) 375
TaqI TCGA 3 cut(s) 553, 819, 938
TaqII GACCGA 1 cut(s) 334
TasI AATT 4 cut(s) 421, 934, 940, 976
TatI WGTACW 1 cut(s) 563
TauI GCSGC 3 cut(s) 131, 134, 186
TfiI GAWTC 2 cut(s) 191, 816
Tru1I TTAA 3 cut(s) 581, 896, 972
Tru9I TTAA 3 cut(s) 581, 896, 972
TscAI CASTG 1 cut(s) 52
TseFI GTSAC 4 cut(s) 47, 544, 779, 862
TseI GCWGC 2 cut(s) 125, 737
Tsp45I GTSAC 4 cut(s) 47, 544, 779, 862
TspDTI ATGAA 2 cut(s) 485, 600
TspGWI ACGGA 3 cut(s) 243, 850, 942
TspRI CASTG 1 cut(s) 52
Tth111I GACNNNGTC 1 cut(s) 344
VpaK11BI GGWCC 3 cut(s) 113, 689, 743
XapI RAATTY 3 cut(s) 421, 940, 976
ZraI GACGTC 1 cut(s) 373
ZrmI AGTACT 1 cut(s) 565
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.