MD08G1028800.v1.1

Auxilin-like protein 1

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
Physical Location & Seq
Reverse (-)
2098134 .. 2105437
7304 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1028800.v1.1.491

Sequence Viewer

Length: 5691 bp
ATGGAGTACCAAGCTCCGTCCGTGGCGCTTTCTCAGAAGCTCTCCAACGGTCTCTCCATCTACGACGGCGTTTTCTCCTCCGCAGCTGCATCCAAGTTCAAAGGCTCGAGTTTCTCCACCCGAGTCGACGACTACGGCGAGATTTTCGGCGGCTCCGGAGCTTCGTCGATTCCGGTGCTCGACGTTCCGGAGCTCCGTGAGCGGAAGGCTTCGGTGGATGTTCGGAGCTCGAAGCTCGATTACTCTAACGTCTTCGGTGGATTTGGAGATTCGGATTTCGCAGTGCCGTATGAGGAGCTCTTTGCGGAGCCGAAGAAGAAGGAAAGAAGGAAGCCGGCTGAAAAGCAGTCGCCTTCGAAAGAGGCAGATCCTTCTAATACCGAGGGGAATCGTGTTTTGTCACATGAAGCGTCTTGTCAATCATTTGATGGTGCCAAGAAGCTCAACATGTCATACAATAAAACCAATCACAGAAGCAAAAGTTTTACAGGCGGAACAATGCTTCATGCTGTTCCAGCATATACATGTTTGGTTGATGAAGTCAGTCCCGTACGCGCGACTGAAGGTGATAAACCGGTACCTTGCAAAGAAAATGGTGCTTCCCCTAACAATAATTTATGTGAGAGAATGACGGAGGGCAACCATCTGAAGACGGCAAGAGACCTCCCAGCTGTTGATGATAGGAAGCAGACTTCTGGGGCAGGTGCCAAGGTTCAGAATAATTATGATCGGAAAAGATCCATTTCGCACAGTGAGTTATTTAATGCATGTGAAATTAATCCTTCAAGCAGTCCATCAATTTCAAGCCCGCTGTCTGAGGGCAAGGTTGAATTTGAGAAACCAATGGCTTCTATTTTTGGCATGTCTAGAAGTGATAATTTAGAAGGTTCTGGCCTTGTTTCTTCACCACCGTACTTTGATGAGGAAGTAGACACAAATTCTACTGCTGCTGCCTCTGCGGCTGCTTTGATAAAGGCAATAGAGGAGGCTCAAGCAAGGATAAATATGGCAAAAGAGTCGAAGGAAAGAAAGAAGACTGGTTTGCAAAATCATGTCAAACCGAGCTTTAACAATGGCACAAAATTTGAGGTGAAAGGAGATAAATTTGTAGATACAGTAAGCATACCAAAAGAGAGGAAGACTCGGGGGTTACATGAAGAAGGGGCTGTTCCTGTTCATGTATCTACTAGTACAAAACTTGAGGTGAGGGGGGATGGATTTGCAGACAAAGTGAGCATACACCAAGAGAGGCAGGCTCGGGAGCTACATGAAGAAGTGGCAATTTTTGTTCATGATTCTACTGGTATGAAACTTGAGGCGAAGGAGGATAAATTTGCAGACAAAGTAAGCATGCCTAAAGAGAGAAAGACTCGGGAGTTACATGAAGAAGTGGCTGTTCCTGTTCATCATTCTACCAGTACAAAACTTGAGGTGAAGGGGGATAAATATGCAGACAAAGTAAGCATACCCAAAGAGAGAAAGACTTGGGGGTTACATGAAGAAGTGGCTGTTCCTGTTCGTGTTTCTACTAGTACAAAACTTGAGGTGAAGGGGGATAAATTTGCAGACGGAGTTGGCCTACCCGAAGAGAGGAAGATTCAGGAGTTACGTGAAGAAGTGGCTGTTCCTGTTCATTTTTCAATTTTTTCTAATGGGCTGGCACAAGTAACTGCAGCACTTGATGATGTGAGTAAAATTTTTGGTGCTAAGGAAACTGGAGGGAAAATAGGGAAGGAATCTATATCAACTCACATAGGTCATACACAGCAACAAGCTGATGTACCAGAAGCAGCTGAACAATTTTATGAAGTTGCTGACACAGGTGAACCTGATTTCTCAGAAGCAGCAGAACAGTTCTATGAATTTCCTGACATGGGAGAACTTGATCTATCAGAACCAGCAGAAGTGTTCTATGAGTTTTCTGACTCGAGTGAACACCAGGCTACAACAGTAGAGGGTGAAGAAGCCAACCCTGCCGTAAAAATGATACAAATTGCTGATGAAGAGGAACAGAAAAGGAAGAAGACAACCATGGAAGCATTTGAAAATCCAGAACTATGTGGCGAGAGATTACAAGCAGCTAAATACGATGAACACGGGGAGTTAGAGAAGATATTCAGTCTGGATGTAGGGTTATCTAAGTGTGAAGAACATGCAAGTGAACTGGAAACAGTTAAAGATGCTTTTGATCAGGAAGAAAATGAGAATAGACTGGAAGCTTCCAGAGAGCATGAAGAAACTGGGAAGCTTCAGGTTTCCTATTTGAAGGAAATTCTTGAAGAGAAGCCAGGGGAGCTCGAGAAGCAAAAAGGATACAACAGAAGACATGAAACTCAAGAGTTACAGGAAACCAGACATGTGAAACGGAAATTGATGTCTCAAGAGCGGGTTGGATATGAGAAGATAGGCAACGAGGTTTACAAGCAGGAAGAAGATGAGAGGGAGCAAAAACATGTCCACAGGGAAGAAGACACTGTGAGGTGGTTCAACAAAGACAACAGGCAAAACATCATTGAGGAGACATTTAAGGACTCTAACGATGAGGAATATGTTGAGAAGAGAAATGAGAGCAAGTCTAAAGGACATGAGAAGCTTGACGACACAAGAGAAACTGAGATGATACCTGAAGGGGCCGCTAGTCAAGAGATAGAATGTGAGAAGAGACAACAAGAGAGGTTTCCACGTGTAGTAGATGGGAGAACGGAAGTACTGATTGATCAGAGTACAGAGGATGAGAAGGTGACAGATGCTCGAGAGGATCTAAAGAACCCAGACTGCAATTTTGAGGCAACTAATAACCTATGTGAAGAGGGTGACAGTGAGGACCTAAATGAAAAAGAGGGGCCCACTGGTCATGCAGAGTATGCCAAGGATGTAGAAGAAACTCTGGAGGTACCTGCACATGAAGAGGACGGGAATAGAATAGAAGTTGCCGAAACTTTGGATGAACTCAAAGAGAATGTGGACCATTCAGAATCAGTTGAAGAGGATAATGGCACAGTAGAGAAAGAGATGCATGAAACAGACTGCAATTTTAAGGCAACTAATAACCTATGTGAGGAGGGTGACAGTGAGGACCTAAGTGAAAAAGAGCGGTCCACTGGACATGCAGAGTATGCCAAGGATGTAGAAGAAACTCTGGAGGTACCTGCACATGAAGAGGACGGGGATAGAATAGAAGTTGCTGAAACTTTGGATGAACTCAAAGAGAATGTGGACCAGTCAGAATCAGTTGAAGAGGATAATGGCAGGGTAGAGAAAGAGATGCATGAAACAGACTGCAATTTTGAGGCAACTAATAACCTATGTGAGGAGGGTGACAGTGAGGACCTAAACGAAAAAGAGGCGTCCACTGGACATGCGGAGTATGACAAGGATGTAGAAGAAACTCTAGAGGTACCTGCACATGAAGAGAACGGGGATAGAATAGAAGTTGCTGAAACTTTGGATGAACTCAAAGAGAATGTGAACCAGTCAGAATCAGTTGAAAAGGATAATGGCACAGTAGAGAAAGAGATGCATGAAATAGACTGCAATTTTGAGGCAACTAATAGCCTATGTGAGGAGGGTGACGGTGAGGACCTAAACGAAAAACAGGGGCCCACTGGACATGCAGAATATGACAAGGATGTAGAAGAAACTCTGGAGGTACCTGCACATGAAGAGGACGGGGATAGAATAGAAGTTGCTGAAACTTTGGATGAACTCAAAGAGAATGTGAACCAATCAGAATCAGTTGAAGAGGATAATGGCACAGTAGAGAAAGAGATGCATGAAACAGACTGCAAACTTGCTGAGTTACCAAAGCAAGTAAAAGATGCAACAGAGGTCCATTCTTGTGACGAAAATGGAATAACTCTGAAGGGAAATGACATGAGCTCTGGCCAAAAGCAAGATCACCAGTTTGTTAGAGAGCCCGAAGTAGTCAACGATTTCGGAAAACAAGTTGAAGAATTGGGAGATATAAATAAGAAAATGATGGAAGCTGAAGTTTCTGCGAAGCAGGAAGAGAACAGGAATAATTCCAGGTCTTCACATAGGAAAAGATGGTTTGATAAACTTGATGTTTCTGAAACTCTTATTAAGCTCAAGGAGAATGGGAACCAATCAGAATCAGTTGAAGAGGAGAATGGCATGGAGGAGAAAGAAATATGTGAAGCTGATGGCTTGGCTTCAGGTGTCAAACTTGCTGAGATACTGAAGCAAATGGAAGATCCAATTGAGAGCCATTCTTGTGAAGAAAATGGGATAAATGTAGATATAAATGCCATGAACTGTGGGCAAAAGCAAGATGTCACTTTAGAAAAGCATGTCGAAGATATGGAAGAAATCAATGAGGATGTGAAGGAAGTTGAAGTTGTCGTGAATCAGGAAGAGAACAAGAATAATTCCAAATCTTCTCACAGGAAAAGGTGGTTTGATGATGGGACCAGTACAGAAGTGGCTCAGCTTTCTCATATCCTAAGAAGAAAGGGCAGAAATATGCGACTGGATCATGAGATGGAGACAACATGTGCAGAGGAAAATATGGATAATCATAAAGCAACCACGACAGAAGAGTGTGTAATCATTCATAGTTCACTGCAAGTCTTGGAACAAGAAAAAGGCGATAATCGTCAAACAACCTTGACTGCAAAGAAAAGTGAAAAACGTCATACTTCAAAGAAAGAAGTGGAACAACAAAAAATGGAAAATCAACAAGAAACCCCGACTGCAGAAGAGTGTGAAACTAGTGCTAGATTGCAAAAGGAAGTAGAGATAGAGAAGGAACTCCTGAAACAAAAACAGAATGCAAAAGGGAGGGAAAGGGAAAGAGTAAAGGAGAAAAAAGCTGTTGAAAGGGTAATTCGGGAAGCTCGCGAAAGGGCATTTGCTGAAGCTCGAGAAAGAGCTGCTGAAACTCGTCAAAAGGCAATCGCTGAGGCCCAAGAAAGGTCGGGAAAGACTTCTGTAAAGGCTAATGATATTTCCTTAGCTGAGAAGGCTTCAAAGGAAGCTAAACTAAAATCTGAACGTGCTGCTGTGGAAAGAGCAACTGAAGAGGCTCGGGAGCGTGCCTTAGAAAAAGCATTATCTGGAAAGGCTTATGAGGCAGGAAAGCAAGCTAAGAGATCTGTTTCTGAGAAATCTTCTGGTGCTTCTAGAGATGATGGAATGAAACTGGGTGTTTTGCCCTCTGACCCAGAGTCTAAATCAAGATACCCAAGTTCTTCAAATAACAGCGATCCTTCCCCTGCTGAGAGGAGTGGTGGAAGTAATGTTGAATCAGCTCAAAGGTGCAAAGCTAAGTTGGAGAGGAATCAACGGACGGCAGAACGTGCGGCTAAAGCTCTTGCGGAGAAGAATATGCGTGATCTTCTTGTACAGAAAGAGCAAGCTGAGAGAAATAGATTAGCAGAAGGTCTCGATGCCGAGGTCAAAAGGTGGTCAAGCGGGAAAGAGAGAAATTTGCGGGCACTACTTTCAACGCTACAATACATACTCGGGCCGGATAGTGGTTGGCAGCCAATTCCTCTAACAGAAATCGTTACTACTGTGGCTGTAAAGAAAGCTTACCGTAAAGCTGCTCTCTTTGTTCATCCTGACAAGTTACAGCAACGGGGTGCAAGCATACAGCAGAAGTACACTTGCGAGAAGGTGTTTGATCTTCTACAGGAGGCTTGGAATAGATTCAACGTAGAAGAGCGGTAG

Protein Analysis

1897

Amino Acids

213.26

Weight (kDa)

4.83

Isoelectric Point (pI)

50.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 692
Acc36I ACCTGC 5 cut(s) 692, 2905, 3157, 3409, 3661
Acc65I GGTACC 5 cut(s) 577, 2893, 3145, 3397, 3649
AccB1I GGYRCC 7 cut(s) 431, 577, 704, 2893, 3145, 3397, 3649
AccBSI CCGCTC 4 cut(s) 202, 2386, 3094, 5686
AccI GTMKAC 2 cut(s) 126, 930
AccII CGCG 3 cut(s) 555, 557, 4860
AccIII TCCGGA 2 cut(s) 155, 187
AclWI GGATC 6 cut(s) 362, 732, 2766, 4208, 4500, 5219
AcoI YGGCCR 1 cut(s) 3883
AcvI CACGTG 1 cut(s) 2684
AcyI GRCGYC 1 cut(s) 3347
AfiI CCNNNNNNNGG 7 cut(s) 1590, 1874, 3058, 3310, 3562, 4932, 5495
AflIII ACRYGT 6 cut(s) 447, 524, 2356, 2452, 2683, 4511
AgeI ACCGGT 1 cut(s) 574
AhdI GACNNNNNGTC 1 cut(s) 5185
AhlI ACTAGT 3 cut(s) 1187, 1529, 4730
AjnI CCWGG 3 cut(s) 1938, 2287, 4025
Alw21I GWGCWC 6 cut(s) 180, 195, 230, 300, 2298, 3881
Alw26I GTCTC 7 cut(s) 56, 654, 2382, 2513, 2656, 4499, 5408
AlwI GGATC 6 cut(s) 362, 732, 2766, 4208, 4500, 5219
Aor13HI TCCGGA 2 cut(s) 155, 187
AoxI GGCC 8 cut(s) 892, 1576, 2631, 2843, 3599, 3883, 4923, 5486
ApaI GGGCCC 2 cut(s) 2847, 3603
ArsI GACNNNNNNTTYG 6 cut(s) 2765, 2797, 3269, 3301, 3521, 3553
AseI ATTAAT 1 cut(s) 777
AsiGI ACCGGT 1 cut(s) 574
Asp700I GAANNNNTTC 3 cut(s) 2114, 4945, 5669
Asp718I GGTACC 5 cut(s) 577, 2893, 3145, 3397, 3649
AspLEI GCGC 2 cut(s) 28, 557
AsuII TTCGAA 1 cut(s) 356
AvaII GGWCC 9 cut(s) 2824, 2965, 3076, 3096, 3217, 3328, 3580, 3829, 4428
BaeGI GKGCMC 3 cut(s) 2847, 3603, 5458
BaeI ACNNNNGTAYC 2 cut(s) 5191, 5224
BalI TGGCCA 1 cut(s) 3885
BanI GGYRCC 7 cut(s) 431, 577, 704, 2893, 3145, 3397, 3649
BanII GRGCYC 8 cut(s) 195, 230, 300, 2298, 2847, 3603, 3881, 3918
BarI GAAGNNNNNNTAC 2 cut(s) 224, 256
BbrPI CACGTG 1 cut(s) 2684
BbsI GAAGAC 8 cut(s) 244, 656, 1040, 1145, 2030, 2329, 2475, 4023
Bbv12I GWGCWC 6 cut(s) 180, 195, 230, 300, 2298, 3881
BbvCI CCTCAGC 1 cut(s) 4920
BceAI ACGGC 6 cut(s) 82, 151, 271, 669, 1961, 5325
BcgI CGANNNNNNTGC 4 cut(s) 157, 191, 999, 1033
BciT130I CCWGG 3 cut(s) 1940, 2289, 4027
BciVI GTATCC 1 cut(s) 2306
BclI TGATCA 2 cut(s) 2188, 2716
BcoDI GTCTC 7 cut(s) 56, 654, 2382, 2513, 2656, 4499, 5408
BcuI ACTAGT 3 cut(s) 1187, 1529, 4730
BfaI CTAG 8 cut(s) 867, 1188, 1530, 2637, 3392, 4731, 4737, 5142
BfmI CTRYAG 3 cut(s) 1671, 4713, 5651
BfoI RGCGCY 1 cut(s) 29
BfuAI ACCTGC 5 cut(s) 692, 2905, 3157, 3409, 3661
BfuI GTATCC 1 cut(s) 2306
BglI GCCNNNNNGGC 1 cut(s) 959
BglII AGATCT 1 cut(s) 5111
BlpI GCTNAGC 1 cut(s) 4446
BmcAI AGTACT 1 cut(s) 2709
Bme1390I CCNGG 3 cut(s) 1940, 2289, 4027
Bme18I GGWCC 9 cut(s) 2824, 2965, 3076, 3096, 3217, 3328, 3580, 3829, 4428
BmeRI GACNNNNNGTC 1 cut(s) 5185
BmrFI CCNGG 3 cut(s) 1940, 2289, 4027
BmrI ACTGGG 2 cut(s) 2250, 5171
BmsI GCATC 9 cut(s) 98, 2170, 2737, 3003, 3255, 3507, 3759, 3808, 5398
BmuI ACTGGG 2 cut(s) 2250, 5171
BpiI GAAGAC 8 cut(s) 244, 656, 1040, 1145, 2030, 2329, 2475, 4023
BplI GAGNNNNNCTC 6 cut(s) 1126, 1158, 1240, 1272, 1354, 1386
BpmI CTGGAG 4 cut(s) 1737, 2909, 3161, 3665
Bpu10I CCTNAGC 3 cut(s) 1707, 4920, 4972
Bpu1102I GCTNAGC 1 cut(s) 4446
Bpu14I TTCGAA 1 cut(s) 356
BpuEI CTTGAG 8 cut(s) 975, 1220, 1334, 1448, 1562, 2319, 2364, 4073
BsaAI YACGTR 2 cut(s) 1610, 2684
BsaHI GRCGYC 1 cut(s) 3347
BsaI GGTCTC 3 cut(s) 56, 654, 5408
BsaJI CCNNGG 8 cut(s) 21, 381, 708, 2031, 2288, 2868, 3120, 5412
BsaWI WCCGGW 4 cut(s) 155, 172, 187, 574
BsaXI ACNNNNNCTCC 2 cut(s) 38, 68
Bsc4I CCNNNNNNNGG 7 cut(s) 1590, 1874, 3058, 3310, 3562, 4932, 5495
Bse118I RCCGGY 2 cut(s) 334, 574
BseAI TCCGGA 2 cut(s) 155, 187
BseBI CCWGG 3 cut(s) 1940, 2289, 4027
BseDI CCNNGG 8 cut(s) 21, 381, 708, 2031, 2288, 2868, 3120, 5412
BseLI CCNNNNNNNGG 7 cut(s) 1590, 1874, 3058, 3310, 3562, 4932, 5495
BseSI GKGCMC 3 cut(s) 2847, 3603, 5458
BseYI CCCAGC 1 cut(s) 667
BsgI GTGCAG 5 cut(s) 2883, 3135, 3387, 3639, 4536
Bsh1236I CGCG 3 cut(s) 555, 557, 4860
BshFI GGCC 8 cut(s) 894, 1578, 2633, 2845, 3601, 3885, 4925, 5488
BshNI GGYRCC 7 cut(s) 431, 577, 704, 2893, 3145, 3397, 3649
BshTI ACCGGT 1 cut(s) 574
BsiHKAI GWGCWC 6 cut(s) 180, 195, 230, 300, 2298, 3881
BsiSI CCGG 6 cut(s) 156, 173, 188, 335, 575, 5489
BsiWI CGTACG 1 cut(s) 550
BslFI GGGAC 2 cut(s) 531, 4441
BslI CCNNNNNNNGG 7 cut(s) 1590, 1874, 3058, 3310, 3562, 4932, 5495
BsmAI GTCTC 7 cut(s) 56, 654, 2382, 2513, 2656, 4499, 5408
BsmFI GGGAC 2 cut(s) 531, 4441
BsmI GAATGC 1 cut(s) 4795
BsnI GGCC 8 cut(s) 894, 1578, 2633, 2845, 3601, 3885, 4925, 5488
Bso31I GGTCTC 3 cut(s) 56, 654, 5408
Bsp119I TTCGAA 1 cut(s) 356
Bsp120I GGGCCC 2 cut(s) 2843, 3599
Bsp13I TCCGGA 2 cut(s) 155, 187
Bsp1407I TGTACA 1 cut(s) 5362
Bsp1720I GCTNAGC 1 cut(s) 4446
Bsp19I CCATGG 1 cut(s) 2031
Bsp68I TCGCGA 1 cut(s) 4860
BspANI GGCC 8 cut(s) 894, 1578, 2633, 2845, 3601, 3885, 4925, 5488
BspEI TCCGGA 2 cut(s) 155, 187
BspFNI CGCG 3 cut(s) 555, 557, 4860
BspHI TCATGA 2 cut(s) 1291, 4495
BspMAI CTGCAG 2 cut(s) 1675, 4717
BspMI ACCTGC 5 cut(s) 692, 2905, 3157, 3409, 3661
BspPI GGATC 6 cut(s) 362, 732, 2766, 4208, 4500, 5219
BspQI GCTCTTC 1 cut(s) 5676
BspT104I TTCGAA 1 cut(s) 356
BspT107I GGYRCC 7 cut(s) 431, 577, 704, 2893, 3145, 3397, 3649
BspTNI GGTCTC 3 cut(s) 56, 654, 5408
BsrBI CCGCTC 4 cut(s) 202, 2386, 3094, 5686
BsrFI RCCGGY 2 cut(s) 334, 574
BsrGI TGTACA 1 cut(s) 5362
BssAI RCCGGY 2 cut(s) 334, 574
BssECI CCNNGG 8 cut(s) 21, 381, 708, 2031, 2288, 2868, 3120, 5412
BssNI GRCGYC 1 cut(s) 3347
BssT1I CCWWGG 4 cut(s) 708, 2031, 2868, 3120
Bst2UI CCWGG 3 cut(s) 1940, 2289, 4027
BstACI GRCGYC 1 cut(s) 3347
BstAPI GCANNNNNTGC 3 cut(s) 2864, 3116, 5318
BstAUI TGTACA 1 cut(s) 5362
BstBAI YACGTR 2 cut(s) 1610, 2684
BstBI TTCGAA 1 cut(s) 356
BstDSI CCRYGG 2 cut(s) 21, 2031
BstENI CCTNNNNNAGG 3 cut(s) 3056, 3308, 3560
BstFNI CGCG 3 cut(s) 555, 557, 4860
BstH2I RGCGCY 1 cut(s) 29
BstHHI GCGC 2 cut(s) 28, 557
BstMAI GTCTC 7 cut(s) 56, 654, 2382, 2513, 2656, 4499, 5408
BstNI CCWGG 3 cut(s) 1940, 2289, 4027
BstSCI CCNGG 3 cut(s) 1938, 2287, 4025
BstSFI CTRYAG 3 cut(s) 1671, 4713, 5651
BstSLI GKGCMC 3 cut(s) 2847, 3603, 5458
BstUI CGCG 3 cut(s) 555, 557, 4860
BstV2I GAAGAC 8 cut(s) 244, 656, 1040, 1145, 2030, 2329, 2475, 4023
BstX2I RGATCY 5 cut(s) 367, 737, 2758, 4213, 5111
BstYI RGATCY 5 cut(s) 367, 737, 2758, 4213, 5111
BsuI GTATCC 1 cut(s) 2306
BsuRI GGCC 8 cut(s) 894, 1578, 2633, 2845, 3601, 3885, 4925, 5488
BtgI CCRYGG 2 cut(s) 21, 2031
BtsI GCAGTG 2 cut(s) 288, 4580
BtuMI TCGCGA 1 cut(s) 4860
BveI ACCTGC 5 cut(s) 692, 2905, 3157, 3409, 3661
CciI TCATGA 2 cut(s) 1291, 4495
CfoI GCGC 2 cut(s) 28, 557
Cfr10I RCCGGY 2 cut(s) 334, 574
CseI GACGC 2 cut(s) 399, 3336
CspAI ACCGGT 1 cut(s) 574
DriI GACNNNNNGTC 1 cut(s) 5185
EaeI YGGCCR 1 cut(s) 3883
Eam1105I GACNNNNNGTC 1 cut(s) 5185
EciI GGCGGA 1 cut(s) 507
Ecl136II GAGCTC 5 cut(s) 193, 228, 298, 2296, 3879
Eco130I CCWWGG 4 cut(s) 708, 2031, 2868, 3120
Eco24I GRGCYC 8 cut(s) 195, 230, 300, 2298, 2847, 3603, 3881, 3918
Eco31I GGTCTC 3 cut(s) 56, 654, 5408
Eco47I GGWCC 9 cut(s) 2824, 2965, 3076, 3096, 3217, 3328, 3580, 3829, 4428
Eco53kI GAGCTC 5 cut(s) 193, 228, 298, 2296, 3879
Eco72I CACGTG 1 cut(s) 2684
EcoICRI GAGCTC 5 cut(s) 193, 228, 298, 2296, 3879
EcoNI CCTNNNNNAGG 3 cut(s) 3056, 3308, 3560
EcoO109I RGGNCCY 6 cut(s) 2824, 2843, 3076, 3328, 3580, 3599
EcoRII CCWGG 3 cut(s) 1938, 2287, 4025
EcoT14I CCWWGG 4 cut(s) 708, 2031, 2868, 3120
EcoT22I ATGCAT 5 cut(s) 769, 3018, 3270, 3522, 3774
EcoT38I GRGCYC 8 cut(s) 195, 230, 300, 2298, 2847, 3603, 3881, 3918
ErhI CCWWGG 4 cut(s) 708, 2031, 2868, 3120
FaqI GGGAC 2 cut(s) 531, 4441
FauI CCCGC 4 cut(s) 816, 2379, 5426, 5445
FbaI TGATCA 2 cut(s) 2188, 2716
FblI GTMKAC 2 cut(s) 126, 930
FriOI GRGCYC 8 cut(s) 195, 230, 300, 2298, 2847, 3603, 3881, 3918
FspBI CTAG 8 cut(s) 867, 1188, 1530, 2637, 3392, 4731, 4737, 5142
GlaI GCGC 2 cut(s) 27, 556
GsaI CCCAGC 1 cut(s) 671
GsuI CTGGAG 4 cut(s) 1737, 2909, 3161, 3665
HaeII RGCGCY 1 cut(s) 29
HaeIII GGCC 8 cut(s) 894, 1578, 2633, 2845, 3601, 3885, 4925, 5488
HapII CCGG 6 cut(s) 156, 173, 188, 335, 575, 5489
HgaI GACGC 2 cut(s) 399, 3336
HhaI GCGC 2 cut(s) 28, 557
Hin1I GRCGYC 1 cut(s) 3347
Hin6I GCGC 2 cut(s) 26, 555
HinP1I GCGC 2 cut(s) 26, 555
HincII GTYRAC 2 cut(s) 127, 3928
HindII GTYRAC 2 cut(s) 127, 3928
HindIII AAGCTT 4 cut(s) 2217, 2246, 2591, 5550
HpaII CCGG 6 cut(s) 156, 173, 188, 335, 575, 5489
Hpy99I CGWCG 4 cut(s) 68, 131, 169, 185
HpyCH4IV ACGT 8 cut(s) 183, 249, 1609, 2683, 4651, 5014, 5317, 5676
HpySE526I ACGT 8 cut(s) 183, 249, 1609, 2683, 4651, 5014, 5317, 5676
Hsp92I GRCGYC 1 cut(s) 3347
HspAI GCGC 2 cut(s) 26, 555
Kpn2I TCCGGA 2 cut(s) 155, 187
KpnI GGTACC 5 cut(s) 581, 2897, 3149, 3401, 3653
KroI GCCGGC 1 cut(s) 334
KroNI GCCGGC 1 cut(s) 336
Ksp22I TGATCA 2 cut(s) 2188, 2716
LguI GCTCTTC 1 cut(s) 5676
LweI GCATC 9 cut(s) 98, 2170, 2737, 3003, 3255, 3507, 3759, 3808, 5398
MaeI CTAG 8 cut(s) 867, 1188, 1530, 2637, 3392, 4731, 4737, 5142
MaeII ACGT 8 cut(s) 183, 249, 1609, 2683, 4651, 5014, 5317, 5676
MbiI CCGCTC 4 cut(s) 202, 2386, 3094, 5686
MfeI CAATTG 1 cut(s) 4218
MflI RGATCY 5 cut(s) 367, 737, 2758, 4213, 5111
MlsI TGGCCA 1 cut(s) 3885
MluNI TGGCCA 1 cut(s) 3885
MlyI GAGTC 7 cut(s) 132, 1025, 1135, 1363, 1919, 2525, 5195
MmeI TCCRAC 3 cut(s) 69, 2371, 5271
Mox20I TGGCCA 1 cut(s) 3885
Mph1103I ATGCAT 5 cut(s) 769, 3018, 3270, 3522, 3774
MroI TCCGGA 2 cut(s) 155, 187
MroNI GCCGGC 1 cut(s) 334
MroXI GAANNNNTTC 3 cut(s) 2114, 4945, 5669
MscI TGGCCA 1 cut(s) 3885
MseI TTAA 7 cut(s) 762, 777, 1068, 2175, 2526, 3036, 4083
MslI CAYNNNNRTG 4 cut(s) 523, 2157, 3837, 4233
Msp20I TGGCCA 1 cut(s) 3885
MspA1I CMGCKG 4 cut(s) 86, 671, 811, 1793
MspI CCGG 6 cut(s) 156, 173, 188, 335, 575, 5489
MspR9I CCNGG 3 cut(s) 1940, 2289, 4027
MunI CAATTG 1 cut(s) 4218
Mva1269I GAATGC 1 cut(s) 4795
MvaI CCWGG 3 cut(s) 1940, 2289, 4027
MvnI CGCG 3 cut(s) 555, 557, 4860
NaeI GCCGGC 1 cut(s) 336
NcoI CCATGG 1 cut(s) 2031
NgoMIV GCCGGC 1 cut(s) 334
NmeAIII GCCGAG 1 cut(s) 5437
NmuCI GTSAC 8 cut(s) 399, 2740, 2813, 3065, 3317, 3569, 3839, 4294
NruI TCGCGA 1 cut(s) 4860
NsiI ATGCAT 5 cut(s) 769, 3018, 3270, 3522, 3774
NspV TTCGAA 1 cut(s) 356
PaeI GCATGC 1 cut(s) 1354
PaeR7I CTCGAG 5 cut(s) 106, 1927, 2297, 2751, 4881
PagI TCATGA 2 cut(s) 1291, 4495
PaqCI CACCTGC 1 cut(s) 692
PciI ACATGT 5 cut(s) 447, 524, 2356, 2452, 4511
PciSI GCTCTTC 1 cut(s) 5676
PcsI WCGNNNNNNNCGW 1 cut(s) 135
PctI GAATGC 1 cut(s) 4795
PdiI GCCGGC 1 cut(s) 336
PdmI GAANNNNTTC 3 cut(s) 2114, 4945, 5669
Pfl23II CGTACG 1 cut(s) 550
PinAI ACCGGT 1 cut(s) 574
PleI GAGTC 7 cut(s) 131, 1024, 1135, 1363, 1919, 2525, 5194
PmaCI CACGTG 1 cut(s) 2684
PmlI CACGTG 1 cut(s) 2684
PpsI GAGTC 7 cut(s) 131, 1024, 1135, 1363, 1919, 2525, 5194
Ppu21I YACGTR 2 cut(s) 1610, 2684
PpuMI RGGWCCY 4 cut(s) 2824, 3076, 3328, 3580
PscI ACATGT 5 cut(s) 447, 524, 2356, 2452, 4511
PshBI ATTAAT 1 cut(s) 777
Psp124BI GAGCTC 5 cut(s) 195, 230, 300, 2298, 3881
Psp5II RGGWCCY 4 cut(s) 2824, 3076, 3328, 3580
Psp6I CCWGG 3 cut(s) 1938, 2287, 4025
PspCI CACGTG 1 cut(s) 2684
PspFI CCCAGC 1 cut(s) 667
PspGI CCWGG 3 cut(s) 1938, 2287, 4025
PspLI CGTACG 1 cut(s) 550
PspOMI GGGCCC 2 cut(s) 2843, 3599
PspPPI RGGWCCY 4 cut(s) 2824, 3076, 3328, 3580
PspXI VCTCGAGB 2 cut(s) 106, 1927
PstI CTGCAG 2 cut(s) 1675, 4717
PsuI RGATCY 5 cut(s) 367, 737, 2758, 4213, 5111
PvuII CAGCTG 3 cut(s) 86, 671, 1793
RruI TCGCGA 1 cut(s) 4860
RseI CAYNNNNRTG 4 cut(s) 523, 2157, 3837, 4233
SacI GAGCTC 5 cut(s) 195, 230, 300, 2298, 3881
SalI GTCGAC 1 cut(s) 125
SapI GCTCTTC 1 cut(s) 5676
SaqAI TTAA 7 cut(s) 762, 777, 1068, 2175, 2526, 3036, 4083
ScaI AGTACT 1 cut(s) 2709
SchI GAGTC 7 cut(s) 132, 1025, 1135, 1363, 1919, 2525, 5195
ScrFI CCNGG 3 cut(s) 1940, 2289, 4027
SfaNI GCATC 9 cut(s) 98, 2170, 2737, 3003, 3255, 3507, 3759, 3808, 5398
SfcI CTRYAG 3 cut(s) 1671, 4713, 5651
Sfr274I CTCGAG 5 cut(s) 106, 1927, 2297, 2751, 4881
SfuI TTCGAA 1 cut(s) 356
SinI GGWCC 9 cut(s) 2824, 2965, 3076, 3096, 3217, 3328, 3580, 3829, 4428
SlaI CTCGAG 5 cut(s) 106, 1927, 2297, 2751, 4881
SmiMI CAYNNNNRTG 4 cut(s) 523, 2157, 3837, 4233
SpeI ACTAGT 3 cut(s) 1187, 1529, 4730
SphI GCATGC 1 cut(s) 1354
SspMI CTAG 8 cut(s) 867, 1188, 1530, 2637, 3392, 4731, 4737, 5142
SstI GAGCTC 5 cut(s) 195, 230, 300, 2298, 3881
StyD4I CCNGG 3 cut(s) 1938, 2287, 4025
StyI CCWWGG 4 cut(s) 708, 2031, 2868, 3120
TaiI ACGT 8 cut(s) 186, 252, 1612, 2686, 4654, 5017, 5320, 5679
TatI WGTACW 8 cut(s) 1190, 1418, 1532, 2707, 2723, 4433, 5362, 5622
TauI GCSGC 4 cut(s) 153, 962, 2636, 5324
Tru1I TTAA 7 cut(s) 762, 777, 1068, 2175, 2526, 3036, 4083
Tru9I TTAA 7 cut(s) 762, 777, 1068, 2175, 2526, 3036, 4083
TseFI GTSAC 8 cut(s) 399, 2740, 2813, 3065, 3317, 3569, 3839, 4294
Tsp45I GTSAC 8 cut(s) 399, 2740, 2813, 3065, 3317, 3569, 3839, 4294
TspGWI ACGGA 8 cut(s) 6, 10, 185, 647, 1584, 2380, 2717, 5320
VpaK11BI GGWCC 9 cut(s) 2824, 2965, 3076, 3096, 3217, 3328, 3580, 3829, 4428
VspI ATTAAT 1 cut(s) 777
XagI CCTNNNNNAGG 3 cut(s) 3056, 3308, 3560
XbaI TCTAGA 3 cut(s) 866, 3391, 5141
XcmI CCANNNNNNNNNTGG 1 cut(s) 4438
XhoI CTCGAG 5 cut(s) 106, 1927, 2297, 2751, 4881
XmiI GTMKAC 2 cut(s) 126, 930
XmnI GAANNNNTTC 3 cut(s) 2114, 4945, 5669
XspI CTAG 8 cut(s) 867, 1188, 1530, 2637, 3392, 4731, 4737, 5142
ZrmI AGTACT 1 cut(s) 2709
Zsp2I ATGCAT 5 cut(s) 769, 3018, 3270, 3522, 3774
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.