MD08G1087800.v1.1

Glycine-rich cell wall structural

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0018385
Physical Location & Seq
Reverse (-)
7256189 .. 7257358
1170 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1087800.v1.1.491

Sequence Viewer

Length: 474 bp
ATGGCGAGGAGCAACGCAGTTTCATGGAGTCTAATGTTCTTGGCTATGGGGATTTTTAGTTACGTAGCAGTTGAAGCCACCAGAGAAGGGATTCAAGGGAGGGATCTGATAGACAAGAGACTTGGTTTGGACCATGGGATAAAGAATTGGCACAGTGAAGAGGCTGCTGCTTCTCAAGGACTGACAGCTGATGGTTACGGAGGTTATGGCTCAGGCTCTGGTGGCGGCGGAGGAGGCTCTGGTGGTGGCGGAGGCTTTGGTGGTGATAATGGCGGTGGCAAGGGATATGGTGGTAATGGTGGTGGGTTTCACAATGGTGGTGGATTTGGTAATGGTGGCGGATTTGGGAATGGTGGTGGGTTTCATAATGGCGGTGGAGGAGATGGTGGATTTGGGGCAGGCACAGGCCCAGGTTATGGTGGAGGGATGGGTGCGGGCGGTGGAGGATATGGTCATGATGAGAAGATGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

158

Amino Acids

14.75

Weight (kDa)

5.61

Isoelectric Point (pI)

30.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018385)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g33330
malus_domestica MD08G1087800.v1.1
prunus_persica Prupe.1G425300_v2.0.a1
pyrus_communis pycom15g06790
rosa_chinensis RchiOBHm_Chr6g0309291
rosa_laevigata RLG00000010576
rosa_multiflora Rmu_sc0015692.1_g000005
rosa_rugosa Rorug06G0370700
rosa_samantha Rh6AG484100
rosa_wichuraiana Rw6G042140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 416
AciI CCGC 8 cut(s) 225, 228, 249, 273, 339, 372, 434, 438
AclWI GGATC 1 cut(s) 111
AfiI CCNNNNNNNGG 2 cut(s) 87, 416
AgsI TTSAA 2 cut(s) 74, 95
AjnI CCWGG 1 cut(s) 409
AleI CACNNNNGTG 1 cut(s) 315
AluBI AGCT 1 cut(s) 188
AluI AGCT 1 cut(s) 188
Alw26I GTCTC 1 cut(s) 112
AlwI GGATC 1 cut(s) 111
AlwNI CAGNNNCTG 1 cut(s) 218
AoxI GGCC 1 cut(s) 406
ApeKI GCWGC 2 cut(s) 164, 167
Asp700I GAANNNNTTC 1 cut(s) 90
AspS9I GGNCC 2 cut(s) 130, 407
AsuHPI GGTGA 1 cut(s) 275
AvaII GGWCC 1 cut(s) 130
BbvI GCAGC 2 cut(s) 151, 154
BccI CCATC 3 cut(s) 185, 377, 421
BciT130I CCWGG 1 cut(s) 411
BcoDI GTCTC 1 cut(s) 112
BfaI CTAG 1 cut(s) 472
BisI GCNGC 3 cut(s) 165, 168, 226
BlsI GCNGC 3 cut(s) 166, 169, 227
Bme1390I CCNGG 1 cut(s) 411
Bme18I GGWCC 1 cut(s) 130
BmgT120I GGNCC 2 cut(s) 130, 407
BmrFI CCNGG 1 cut(s) 411
Bpu10I CCTNAGC 1 cut(s) 211
BpuEI CTTGAG 1 cut(s) 159
BsaAI YACGTR 1 cut(s) 64
BsaJI CCNNGG 2 cut(s) 133, 409
Bsc4I CCNNNNNNNGG 2 cut(s) 87, 416
BseBI CCWGG 1 cut(s) 411
BseDI CCNNGG 2 cut(s) 133, 409
BseGI GGATG 1 cut(s) 432
BseLI CCNNNNNNNGG 2 cut(s) 87, 416
BseMII CTCAG 1 cut(s) 225
BseRI GAGGAG 3 cut(s) 22, 246, 393
BseXI GCAGC 2 cut(s) 151, 154
BshFI GGCC 1 cut(s) 408
BslI CCNNNNNNNGG 2 cut(s) 87, 416
BsmAI GTCTC 1 cut(s) 112
BsnI GGCC 1 cut(s) 408
Bsp143I GATC 1 cut(s) 103
Bsp19I CCATGG 1 cut(s) 133
BspACI CCGC 8 cut(s) 225, 228, 249, 273, 339, 372, 434, 438
BspANI GGCC 1 cut(s) 408
BspCNI CTCAG 1 cut(s) 224
BspHI TCATGA 1 cut(s) 454
BspPI GGATC 1 cut(s) 111
BssECI CCNNGG 2 cut(s) 133, 409
BssMI GATC 1 cut(s) 103
BssT1I CCWWGG 1 cut(s) 133
Bst2UI CCWGG 1 cut(s) 411
Bst4CI ACNGT 1 cut(s) 155
Bst6I CTCTTC 1 cut(s) 153
BstBAI YACGTR 1 cut(s) 64
BstC8I GCNNGC 2 cut(s) 400, 436
BstDEI CTNAG 1 cut(s) 211
BstDSI CCRYGG 1 cut(s) 133
BstF5I GGATG 1 cut(s) 432
BstKTI GATC 1 cut(s) 106
BstMAI GTCTC 1 cut(s) 112
BstMBI GATC 1 cut(s) 103
BstMWI GCNNNNNNNGC 3 cut(s) 74, 222, 234
BstNI CCWGG 1 cut(s) 411
BstSCI CCNGG 1 cut(s) 409
BstSNI TACGTA 1 cut(s) 64
BstV1I GCAGC 2 cut(s) 151, 154
BstX2I RGATCY 1 cut(s) 103
BstYI RGATCY 1 cut(s) 103
BsuRI GGCC 1 cut(s) 408
BtgI CCRYGG 1 cut(s) 133
BtsCI GGATG 1 cut(s) 432
BtsIMutI CAGTG 1 cut(s) 160
Cac8I GCNNGC 2 cut(s) 400, 436
CaiI CAGNNNCTG 1 cut(s) 218
CciI TCATGA 1 cut(s) 454
Cfr13I GGNCC 2 cut(s) 130, 407
CspCI CAANNNNNGTGG 2 cut(s) 301, 336
CviAII CATG 3 cut(s) 24, 134, 455
CviJI RGCY 9 cut(s) 44, 77, 164, 188, 210, 216, 237, 255, 408
CviKI_1 RGCY 9 cut(s) 44, 77, 164, 188, 210, 216, 237, 255, 408
DdeI CTNAG 1 cut(s) 211
DpnI GATC 1 cut(s) 105
DpnII GATC 1 cut(s) 103
Eam1104I CTCTTC 1 cut(s) 153
EarI CTCTTC 1 cut(s) 153
EciI GGCGGA 3 cut(s) 243, 264, 354
Eco105I TACGTA 1 cut(s) 64
Eco130I CCWWGG 1 cut(s) 133
Eco47I GGWCC 1 cut(s) 130
EcoRII CCWGG 1 cut(s) 409
EcoT14I CCWWGG 1 cut(s) 133
ErhI CCWWGG 1 cut(s) 133
FaeI CATG 3 cut(s) 27, 137, 458
FaiI YATR 9 cut(s) 25, 47, 135, 207, 288, 366, 417, 450, 456
FatI CATG 3 cut(s) 23, 133, 454
FauI CCCGC 1 cut(s) 427
Fnu4HI GCNGC 3 cut(s) 165, 168, 226
FokI GGATG 1 cut(s) 439
Fsp4HI GCNGC 3 cut(s) 165, 168, 226
FspBI CTAG 1 cut(s) 472
GluI GCNGC 3 cut(s) 165, 168, 226
HaeIII GGCC 1 cut(s) 408
Hin1II CATG 3 cut(s) 27, 137, 458
HinfI GANTC 2 cut(s) 28, 91
HphI GGTGA 1 cut(s) 275
Hpy188I TCNGA 1 cut(s) 108
Hpy188III TCNNGA 1 cut(s) 455
HpyAV CCTTC 1 cut(s) 80
HpyCH4III ACNGT 1 cut(s) 155
HpyCH4IV ACGT 1 cut(s) 63
HpyF10VI GCNNNNNNNGC 3 cut(s) 74, 222, 234
HpyF3I CTNAG 1 cut(s) 211
HpySE526I ACGT 1 cut(s) 63
Hsp92II CATG 3 cut(s) 27, 137, 458
Kzo9I GATC 1 cut(s) 103
LmnI GCTCC 1 cut(s) 9
LpnPI CCDG 8 cut(s) 94, 198, 204, 225, 384, 390, 396, 423
Lsp1109I GCAGC 2 cut(s) 151, 154
MaeI CTAG 1 cut(s) 472
MaeII ACGT 1 cut(s) 63
MaeIII GTNAC 2 cut(s) 59, 194
MalI GATC 1 cut(s) 105
MboI GATC 1 cut(s) 103
MboII GAAGA 1 cut(s) 170
MflI RGATCY 1 cut(s) 103
MluCI AATT 1 cut(s) 145
MlyI GAGTC 1 cut(s) 37
MnlI CCTC 9 cut(s) 93, 154, 194, 224, 227, 245, 371, 416, 437
MroXI GAANNNNTTC 1 cut(s) 90
MslI CAYNNNNRTG 1 cut(s) 315
MspA1I CMGCKG 1 cut(s) 188
MspR9I CCNGG 1 cut(s) 411
MvaI CCWGG 1 cut(s) 411
MwoI GCNNNNNNNGC 3 cut(s) 74, 222, 234
NcoI CCATGG 1 cut(s) 133
NdeII GATC 1 cut(s) 103
NlaIII CATG 3 cut(s) 27, 137, 458
OliI CACNNNNGTG 1 cut(s) 315
PagI TCATGA 1 cut(s) 454
PdmI GAANNNNTTC 1 cut(s) 90
PfeI GAWTC 1 cut(s) 91
PflMI CCANNNNNTGG 1 cut(s) 416
PkrI GCNGC 3 cut(s) 166, 169, 227
PleI GAGTC 1 cut(s) 36
PpsI GAGTC 1 cut(s) 36
Ppu21I YACGTR 1 cut(s) 64
Psp6I CCWGG 1 cut(s) 409
PspGI CCWGG 1 cut(s) 409
PspPI GGNCC 2 cut(s) 130, 407
PstNI CAGNNNCTG 1 cut(s) 218
PsuI RGATCY 1 cut(s) 103
PvuII CAGCTG 1 cut(s) 188
RseI CAYNNNNRTG 1 cut(s) 315
SatI GCNGC 3 cut(s) 165, 168, 226
Sau3AI GATC 1 cut(s) 103
Sau96I GGNCC 2 cut(s) 130, 407
SchI GAGTC 1 cut(s) 37
ScrFI CCNGG 1 cut(s) 411
SetI ASST 4 cut(s) 66, 190, 205, 415
SinI GGWCC 1 cut(s) 130
SmiMI CAYNNNNRTG 1 cut(s) 315
SmlI CTYRAG 1 cut(s) 174
SmoI CTYRAG 1 cut(s) 174
SnaBI TACGTA 1 cut(s) 64
Sse9I AATT 1 cut(s) 145
SsiI CCGC 8 cut(s) 225, 228, 249, 273, 339, 372, 434, 438
SspMI CTAG 1 cut(s) 472
StyD4I CCNGG 1 cut(s) 409
StyI CCWWGG 1 cut(s) 133
TaaI ACNGT 1 cut(s) 155
TaiI ACGT 1 cut(s) 66
TasI AATT 1 cut(s) 145
TauI GCSGC 1 cut(s) 228
TfiI GAWTC 1 cut(s) 91
TscAI CASTG 1 cut(s) 160
TseI GCWGC 2 cut(s) 164, 167
TspDTI ATGAA 2 cut(s) 12, 353
TspGWI ACGGA 1 cut(s) 213
TspRI CASTG 1 cut(s) 160
Van91I CCANNNNNTGG 1 cut(s) 416
VpaK11BI GGWCC 1 cut(s) 130
XmnI GAANNNNTTC 1 cut(s) 90
XspI CTAG 1 cut(s) 472
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.