Prupe.1G425300_v2.0.a1

Glycine-rich cell wall structural

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0018385
Physical Location & Seq
Reverse (-)
36612465 .. 36614933
2469 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G425300.1

Sequence Viewer

Length: 453 bp
ATGGCAAGGAGTAATGTAGTTTCATGGAGTCTCATTGCTATGGGGCTTTTCAGTTATGTATCTGTTCAAGCCACCAGAGAAGGGAGGTCTCTGATAGATCTCAGAGACAAGAGACTTGATTTGGACAATGGGTTAAAGAATTGGCACGGTGAAGAGGCAACTTATCAAGGGCTGACAGCTGATGGTTACGGGGCAGGGCCTGGTTATGGTTTTGGTGGTGGTGGGAGTGGTACAGGCAATGGTGGCGGTAAAGGTGGAGGCTATGGTGATGGCAGTGGTGGCTTTGGAAGTGGTGTTGGGCATGGTGGTAATGGTGGCAATGGTGGCGGATTTGGTAATGGTGTTGGAGGAGGTGGTGGGTTTGGTGGAGGCTCGGGCACAGGCCCAGGTTATGGTGGTGGTGGGGTAGGTGGGGGTGGTGGAGGATATGGTCACGATGAGAGGATGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

151

Amino Acids

14.13

Weight (kDa)

5.82

Isoelectric Point (pI)

22.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018385)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g33330
malus_domestica MD08G1087800.v1.1
prunus_persica Prupe.1G425300_v2.0.a1
pyrus_communis pycom15g06790
rosa_chinensis RchiOBHm_Chr6g0309291
rosa_laevigata RLG00000010576
rosa_multiflora Rmu_sc0015692.1_g000005
rosa_rugosa Rorug06G0370700
rosa_samantha Rh6AG484100
rosa_wichuraiana Rw6G042140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 392
AciI CCGC 2 cut(s) 246, 327
AfaI GTAC 1 cut(s) 232
AfiI CCNNNNNNNGG 3 cut(s) 81, 206, 392
AgsI TTSAA 1 cut(s) 68
AjnI CCWGG 2 cut(s) 199, 385
AluBI AGCT 1 cut(s) 179
AluI AGCT 1 cut(s) 179
Alw26I GTCTC 4 cut(s) 35, 93, 99, 106
AlwNI CAGNNNCTG 1 cut(s) 200
Ama87I CYCGRG 1 cut(s) 373
AoxI GGCC 2 cut(s) 197, 382
AspS9I GGNCC 2 cut(s) 197, 383
AsuHPI GGTGA 2 cut(s) 161, 278
AvaI CYCGRG 1 cut(s) 373
BaeGI GKGCMC 1 cut(s) 380
BccI CCATC 2 cut(s) 176, 263
BciT130I CCWGG 2 cut(s) 201, 387
BcoDI GTCTC 4 cut(s) 35, 93, 99, 106
BglII AGATCT 1 cut(s) 97
Bme1390I CCNGG 2 cut(s) 201, 387
BmeT110I CYCGRG 1 cut(s) 373
BmgT120I GGNCC 2 cut(s) 197, 383
BmrFI CCNGG 2 cut(s) 201, 387
BsaI GGTCTC 1 cut(s) 93
BsaJI CCNNGG 1 cut(s) 385
Bsc4I CCNNNNNNNGG 3 cut(s) 81, 206, 392
Bse3DI GCAATG 3 cut(s) 33, 244, 325
BseBI CCWGG 2 cut(s) 201, 387
BseDI CCNNGG 1 cut(s) 385
BseGI GGATG 1 cut(s) 450
BseLI CCNNNNNNNGG 3 cut(s) 81, 206, 392
BseMI GCAATG 3 cut(s) 33, 244, 325
BseMII CTCAG 1 cut(s) 115
BseRI GAGGAG 1 cut(s) 363
BseSI GKGCMC 1 cut(s) 380
BshFI GGCC 2 cut(s) 199, 384
BsiHKCI CYCGRG 1 cut(s) 373
BslI CCNNNNNNNGG 3 cut(s) 81, 206, 392
BsmAI GTCTC 4 cut(s) 35, 93, 99, 106
BsnI GGCC 2 cut(s) 199, 384
Bso31I GGTCTC 1 cut(s) 93
BsoBI CYCGRG 1 cut(s) 373
Bsp1286I GDGCHC 1 cut(s) 380
Bsp143I GATC 1 cut(s) 97
BspACI CCGC 2 cut(s) 246, 327
BspANI GGCC 2 cut(s) 199, 384
BspCNI CTCAG 1 cut(s) 114
BspTNI GGTCTC 1 cut(s) 93
BsrDI GCAATG 3 cut(s) 33, 244, 325
BssECI CCNNGG 1 cut(s) 385
BssMI GATC 1 cut(s) 97
Bst2UI CCWGG 2 cut(s) 201, 387
Bst4CI ACNGT 1 cut(s) 149
Bst6I CTCTTC 1 cut(s) 147
BstDEI CTNAG 1 cut(s) 101
BstF5I GGATG 1 cut(s) 450
BstKTI GATC 1 cut(s) 100
BstMAI GTCTC 4 cut(s) 35, 93, 99, 106
BstMBI GATC 1 cut(s) 97
BstMWI GCNNNNNNNGC 3 cut(s) 243, 279, 324
BstNI CCWGG 2 cut(s) 201, 387
BstSCI CCNGG 2 cut(s) 199, 385
BstSLI GKGCMC 1 cut(s) 380
BstX2I RGATCY 1 cut(s) 97
BstYI RGATCY 1 cut(s) 97
BsuRI GGCC 2 cut(s) 199, 384
BtsCI GGATG 1 cut(s) 450
BtsI GCAGTG 1 cut(s) 280
BtsIMutI CAGTG 1 cut(s) 280
CaiI CAGNNNCTG 1 cut(s) 200
Cfr13I GGNCC 2 cut(s) 197, 383
Csp6I GTAC 1 cut(s) 231
CviAII CATG 2 cut(s) 24, 302
CviJI RGCY 9 cut(s) 46, 71, 172, 179, 199, 261, 282, 372, 384
CviKI_1 RGCY 9 cut(s) 46, 71, 172, 179, 199, 261, 282, 372, 384
CviQI GTAC 1 cut(s) 231
DdeI CTNAG 1 cut(s) 101
DpnI GATC 1 cut(s) 99
DpnII GATC 1 cut(s) 97
Eam1104I CTCTTC 1 cut(s) 147
EarI CTCTTC 1 cut(s) 147
EciI GGCGGA 1 cut(s) 342
Eco31I GGTCTC 1 cut(s) 93
Eco88I CYCGRG 1 cut(s) 373
EcoO109I RGGNCCY 1 cut(s) 197
EcoRII CCWGG 2 cut(s) 199, 385
FaeI CATG 2 cut(s) 27, 305
FaiI YATR 8 cut(s) 25, 41, 57, 207, 264, 303, 393, 429
FatI CATG 2 cut(s) 23, 301
HaeIII GGCC 2 cut(s) 199, 384
Hin1II CATG 2 cut(s) 27, 305
HinfI GANTC 1 cut(s) 28
HphI GGTGA 2 cut(s) 161, 278
Hpy188I TCNGA 2 cut(s) 93, 104
Hpy188III TCNNGA 1 cut(s) 434
HpyAV CCTTC 1 cut(s) 74
HpyCH4III ACNGT 1 cut(s) 149
HpyF10VI GCNNNNNNNGC 3 cut(s) 243, 279, 324
HpyF3I CTNAG 1 cut(s) 101
Hsp92II CATG 2 cut(s) 27, 305
Kzo9I GATC 1 cut(s) 97
LpnPI CCDG 8 cut(s) 88, 180, 186, 213, 219, 366, 372, 399
MaeIII GTNAC 2 cut(s) 185, 431
MalI GATC 1 cut(s) 99
MboI GATC 1 cut(s) 97
MboII GAAGA 1 cut(s) 164
MflI RGATCY 1 cut(s) 97
MhlI GDGCHC 1 cut(s) 380
MluCI AATT 2 cut(s) 139, 448
MlyI GAGTC 1 cut(s) 37
MmeI TCCRAC 1 cut(s) 325
MnlI CCTC 8 cut(s) 78, 148, 251, 341, 344, 362, 416, 435
MseI TTAA 1 cut(s) 134
MslI CAYNNNNRTG 1 cut(s) 38
MspA1I CMGCKG 1 cut(s) 179
MspR9I CCNGG 2 cut(s) 201, 387
MvaI CCWGG 2 cut(s) 201, 387
MwoI GCNNNNNNNGC 3 cut(s) 243, 279, 324
NdeII GATC 1 cut(s) 97
NlaIII CATG 2 cut(s) 27, 305
NmuCI GTSAC 1 cut(s) 431
PflMI CCANNNNNTGG 1 cut(s) 392
PleI GAGTC 1 cut(s) 36
PpsI GAGTC 1 cut(s) 36
Psp6I CCWGG 2 cut(s) 199, 385
PspGI CCWGG 2 cut(s) 199, 385
PspPI GGNCC 2 cut(s) 197, 383
PstNI CAGNNNCTG 1 cut(s) 200
PsuI RGATCY 1 cut(s) 97
PvuII CAGCTG 1 cut(s) 179
RsaI GTAC 1 cut(s) 232
RsaNI GTAC 1 cut(s) 231
RseI CAYNNNNRTG 1 cut(s) 38
SaqAI TTAA 1 cut(s) 134
Sau3AI GATC 1 cut(s) 97
Sau96I GGNCC 2 cut(s) 197, 383
SchI GAGTC 1 cut(s) 37
ScrFI CCNGG 2 cut(s) 201, 387
SduI GDGCHC 1 cut(s) 380
SetI ASST 6 cut(s) 89, 181, 256, 355, 391, 412
SmiMI CAYNNNNRTG 1 cut(s) 38
Sse9I AATT 2 cut(s) 139, 448
SsiI CCGC 2 cut(s) 246, 327
StyD4I CCNGG 2 cut(s) 199, 385
TaaI ACNGT 1 cut(s) 149
TasI AATT 2 cut(s) 139, 448
Tru1I TTAA 1 cut(s) 134
Tru9I TTAA 1 cut(s) 134
TscAI CASTG 1 cut(s) 280
TseFI GTSAC 1 cut(s) 431
Tsp45I GTSAC 1 cut(s) 431
TspDTI ATGAA 1 cut(s) 12
TspRI CASTG 1 cut(s) 280
Van91I CCANNNNNTGG 1 cut(s) 392
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.