Rh6AG484100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0018385
Physical Location & Seq
Forward (+)
66342139 .. 66342468
330 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG484100.1

Sequence Viewer

Length: 330 bp
ATGACCAAGAGCCCATTGCATACTAAATCGGAAGAAATATGCTATGACCCTTGCCAAGCCCAACATGCGTTAGTCATGAGCTCTTTAAAATCAAGCGGCAGCAAGATCATGCAGCAAGTTAGCGCTGCGGTCATGCAAAGCTCCCCCCGCACCAGAATTGGCTTCCCATCTAATCACGCAAGCATGCCTTCCCGCCAATCTCGTGCTCGGCTCTTAGAACCCCAAGGGCCTAACAAAGTAGCACATTATAAATTTAGGGTTGCTCCCTCTTACCAAGCTCAGATTTCAGGACCGCCTATATATATATATATATATAAAGCACATATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

109

Amino Acids

12.15

Weight (kDa)

9.95

Isoelectric Point (pI)

66.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018385)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g33330
malus_domestica MD08G1087800.v1.1
prunus_persica Prupe.1G425300_v2.0.a1
pyrus_communis pycom15g06790
rosa_chinensis RchiOBHm_Chr6g0309291
rosa_laevigata RLG00000010576
rosa_multiflora Rmu_sc0015692.1_g000005
rosa_rugosa Rorug06G0370700
rosa_samantha Rh6AG484100
rosa_wichuraiana Rw6G042140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 249
AciI CCGC 5 cut(s) 96, 128, 148, 193, 293
AcsI RAATTY 1 cut(s) 251
AfeI AGCGCT 1 cut(s) 124
AluBI AGCT 3 cut(s) 81, 141, 278
AluI AGCT 3 cut(s) 81, 141, 278
Alw21I GWGCWC 2 cut(s) 83, 208
Aor51HI AGCGCT 1 cut(s) 124
AoxI GGCC 1 cut(s) 227
ApeKI GCWGC 3 cut(s) 99, 112, 125
ApoI RAATTY 1 cut(s) 251
AspLEI GCGC 1 cut(s) 125
AspS9I GGNCC 2 cut(s) 227, 290
AvaII GGWCC 1 cut(s) 290
BanII GRGCYC 2 cut(s) 14, 83
BauI CACGAG 1 cut(s) 201
Bbv12I GWGCWC 2 cut(s) 83, 208
BbvI GCAGC 3 cut(s) 111, 112, 124
BccI CCATC 1 cut(s) 175
BfoI RGCGCY 1 cut(s) 126
BisI GCNGC 4 cut(s) 97, 100, 113, 126
BlsI GCNGC 4 cut(s) 98, 101, 114, 127
Bme18I GGWCC 1 cut(s) 290
BmgT120I GGNCC 2 cut(s) 227, 290
BsaJI CCNNGG 1 cut(s) 223
Bse3DI GCAATG 1 cut(s) 14
BseDI CCNNGG 1 cut(s) 223
BseMI GCAATG 1 cut(s) 14
BseMII CTCAG 1 cut(s) 293
BseXI GCAGC 3 cut(s) 111, 112, 124
BshFI GGCC 1 cut(s) 229
BsiHKAI GWGCWC 2 cut(s) 83, 208
BsnI GGCC 1 cut(s) 229
Bsp1286I GDGCHC 3 cut(s) 14, 83, 208
Bsp143I GATC 1 cut(s) 105
BspACI CCGC 5 cut(s) 96, 128, 148, 193, 293
BspANI GGCC 1 cut(s) 229
BspCNI CTCAG 1 cut(s) 292
BspHI TCATGA 1 cut(s) 75
BsrDI GCAATG 1 cut(s) 14
BssECI CCNNGG 1 cut(s) 223
BssMI GATC 1 cut(s) 105
BssSI CACGAG 1 cut(s) 201
BssT1I CCWWGG 1 cut(s) 223
Bst2BI CACGAG 1 cut(s) 201
BstC8I GCNNGC 2 cut(s) 181, 185
BstDEI CTNAG 2 cut(s) 214, 279
BstH2I RGCGCY 1 cut(s) 126
BstHHI GCGC 1 cut(s) 125
BstKTI GATC 1 cut(s) 108
BstMBI GATC 1 cut(s) 105
BstMWI GCNNNNNNNGC 2 cut(s) 65, 147
BstNSI RCATGY 2 cut(s) 68, 187
BstV1I GCAGC 3 cut(s) 111, 112, 124
BsuRI GGCC 1 cut(s) 229
Cac8I GCNNGC 2 cut(s) 181, 185
CciI TCATGA 1 cut(s) 75
CfoI GCGC 1 cut(s) 125
Cfr13I GGNCC 2 cut(s) 227, 290
CviAII CATG 5 cut(s) 65, 76, 109, 133, 184
CviJI RGCY 8 cut(s) 12, 59, 81, 141, 162, 211, 229, 278
CviKI_1 RGCY 8 cut(s) 12, 59, 81, 141, 162, 211, 229, 278
DdeI CTNAG 2 cut(s) 214, 279
DpnI GATC 1 cut(s) 107
DpnII GATC 1 cut(s) 105
DraI TTTAAA 1 cut(s) 87
Ecl136II GAGCTC 1 cut(s) 81
Eco130I CCWWGG 1 cut(s) 223
Eco24I GRGCYC 2 cut(s) 14, 83
Eco47I GGWCC 1 cut(s) 290
Eco47III AGCGCT 1 cut(s) 124
Eco53kI GAGCTC 1 cut(s) 81
EcoICRI GAGCTC 1 cut(s) 81
EcoO109I RGGNCCY 1 cut(s) 227
EcoT14I CCWWGG 1 cut(s) 223
EcoT38I GRGCYC 2 cut(s) 14, 83
ErhI CCWWGG 1 cut(s) 223
FaeI CATG 5 cut(s) 68, 79, 112, 136, 187
FalI AAGNNNNNCTT 2 cut(s) 172, 204
FatI CATG 5 cut(s) 64, 75, 108, 132, 183
FauI CCCGC 2 cut(s) 155, 200
FauNDI CATATG 1 cut(s) 324
Fnu4HI GCNGC 4 cut(s) 97, 100, 113, 126
FriOI GRGCYC 2 cut(s) 14, 83
Fsp4HI GCNGC 4 cut(s) 97, 100, 113, 126
GlaI GCGC 1 cut(s) 124
GluI GCNGC 4 cut(s) 97, 100, 113, 126
HaeII RGCGCY 1 cut(s) 126
HaeIII GGCC 1 cut(s) 229
HhaI GCGC 1 cut(s) 125
Hin1II CATG 5 cut(s) 68, 79, 112, 136, 187
Hin6I GCGC 1 cut(s) 123
HinP1I GCGC 1 cut(s) 123
Hpy188I TCNGA 2 cut(s) 31, 282
Hpy188III TCNNGA 2 cut(s) 76, 288
HpyAV CCTTC 1 cut(s) 198
HpyCH4V TGCA 3 cut(s) 19, 112, 136
HpyF10VI GCNNNNNNNGC 2 cut(s) 65, 147
HpyF3I CTNAG 2 cut(s) 214, 279
Hsp92II CATG 5 cut(s) 68, 79, 112, 136, 187
HspAI GCGC 1 cut(s) 123
Kzo9I GATC 1 cut(s) 105
LmnI GCTCC 2 cut(s) 146, 268
LpnPI CCDG 2 cut(s) 166, 273
Lsp1109I GCAGC 3 cut(s) 111, 112, 124
MalI GATC 1 cut(s) 107
MboI GATC 1 cut(s) 105
MboII GAAGA 1 cut(s) 44
MhlI GDGCHC 3 cut(s) 14, 83, 208
MluCI AATT 2 cut(s) 156, 251
MnlI CCTC 1 cut(s) 277
MseI TTAA 1 cut(s) 86
MwoI GCNNNNNNNGC 2 cut(s) 65, 147
NdeI CATATG 1 cut(s) 324
NdeII GATC 1 cut(s) 105
NlaIII CATG 5 cut(s) 68, 79, 112, 136, 187
NmeAIII GCCGAG 1 cut(s) 187
NspI RCATGY 2 cut(s) 68, 187
PaeI GCATGC 1 cut(s) 187
PagI TCATGA 1 cut(s) 75
PkrI GCNGC 4 cut(s) 98, 101, 114, 127
PsiI TTATAA 1 cut(s) 249
Psp124BI GAGCTC 1 cut(s) 83
PspPI GGNCC 2 cut(s) 227, 290
SacI GAGCTC 1 cut(s) 83
SaqAI TTAA 1 cut(s) 86
SatI GCNGC 4 cut(s) 97, 100, 113, 126
Sau3AI GATC 1 cut(s) 105
Sau96I GGNCC 2 cut(s) 227, 290
SduI GDGCHC 3 cut(s) 14, 83, 208
SetI ASST 3 cut(s) 83, 143, 280
SinI GGWCC 1 cut(s) 290
SphI GCATGC 1 cut(s) 187
Sse9I AATT 2 cut(s) 156, 251
SsiI CCGC 5 cut(s) 96, 128, 148, 193, 293
SstI GAGCTC 1 cut(s) 83
StyI CCWWGG 1 cut(s) 223
TasI AATT 2 cut(s) 156, 251
TauI GCSGC 1 cut(s) 99
Tru1I TTAA 1 cut(s) 86
Tru9I TTAA 1 cut(s) 86
TseI GCWGC 3 cut(s) 99, 112, 125
VpaK11BI GGWCC 1 cut(s) 290
XapI RAATTY 1 cut(s) 251
XceI RCATGY 2 cut(s) 68, 187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.