RLG00000010576

Glycine-rich cell wall structural

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0018385
Physical Location & Seq
Reverse (-)
2746762 .. 2747758
997 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010576

Sequence Viewer

Length: 828 bp
ATGCAAAGCTCCCCCCGCACCAGAATTGGCTTCCCATCTAATCACGCAAGCATGCCTTCCCGCCAATCTCCTGCTCGGCTCTTAGAACCCCAAAGCCCTAACAAAGTAGCACATTATAAATTTAGGTCTCTCGGCTATCAAGATCCTTCACAATCAGAAGAGAGGAAGGCTAAAGACATTACAGATCATATAGTGGTGACGGGAGAAGCCATGGGAAGGAGGGAGGTTTCATGGAGTCTCATTTTCTTGGCGATGGGGCTGGTTAGTTTTGTACCTGTTGAAGCCACGAGGAGGTCTCTGAGAGATAAGGGGAATGACTTGAACAAGGGGCTCCAGAATTGGCACGGTAAAGAGACTACATATGGAGAAATGACAGCTGGTGGTTTCGGGGGAGGGTCTTATAATAGAGATGAACTGGACAAGGGGCTCCAGAGTTGGCGCGGTAAAGAGACTACCTACGAAGAACTGACAGCTGGTGGTTATGGGGGCGGGTCTGGTTTCGGCTCTGGTGGTAGTGGGGGTGGTATAGGAAATGGTGGTGATGGTGGCAGTGGCTTTGGTGGCGGTGCTGGTTATGGGGGTGGATCTGGTAATGGTGGTGGATTGGGTGGTGGTTATGGTAATGGTGGCGGATTTGGCAATGGCGGTGGGGGTGGTGGATTCGGTAATGGTGGCGGCTTTGGCAGTGGAGGTGGTGGAGGAGGTGGTGGCTTTGGCAATGGCAGTGGAGGAAGTGGACAAGGAGGGGGCTCGGGCTTGGGGTCAGGTCCAGGGTATGGTGGTGGTGGTGGAGGTGGAGGATATGATCATGATGGGAGCAAGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

276

Amino Acids

26.79

Weight (kDa)

7.92

Isoelectric Point (pI)

58.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018385)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g33330
malus_domestica MD08G1087800.v1.1
prunus_persica Prupe.1G425300_v2.0.a1
pyrus_communis pycom15g06790
rosa_chinensis RchiOBHm_Chr6g0309291
rosa_laevigata RLG00000010576
rosa_multiflora Rmu_sc0015692.1_g000005
rosa_rugosa Rorug06G0370700
rosa_samantha Rh6AG484100
rosa_wichuraiana Rw6G042140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 117, 402
AccB7I CCANNNNNTGG 1 cut(s) 776
AccII CGCG 1 cut(s) 441
AciI CCGC 8 cut(s) 16, 61, 441, 489, 564, 630, 645, 675
AclWI GGATC 2 cut(s) 137, 592
AcsI RAATTY 1 cut(s) 119
AfaI GTAC 1 cut(s) 273
AfiI CCNNNNNNNGG 3 cut(s) 216, 291, 776
AgsI TTSAA 2 cut(s) 281, 322
AjnI CCWGG 1 cut(s) 769
AluBI AGCT 3 cut(s) 9, 377, 473
AluI AGCT 3 cut(s) 9, 377, 473
Alw26I GTCTC 5 cut(s) 132, 242, 300, 347, 443
AlwI GGATC 2 cut(s) 137, 592
Ama87I CYCGRG 1 cut(s) 751
ApoI RAATTY 1 cut(s) 119
AspLEI GCGC 1 cut(s) 441
AspS9I GGNCC 1 cut(s) 767
AsuHPI GGTGA 2 cut(s) 208, 551
AvaI CYCGRG 1 cut(s) 751
AvaII GGWCC 1 cut(s) 767
BanII GRGCYC 3 cut(s) 333, 429, 752
BauI CACGAG 1 cut(s) 286
BccI CCATC 4 cut(s) 43, 247, 536, 806
BciT130I CCWGG 1 cut(s) 771
BclI TGATCA 1 cut(s) 805
BcoDI GTCTC 5 cut(s) 132, 242, 300, 347, 443
BfaI CTAG 1 cut(s) 826
BisI GCNGC 1 cut(s) 676
BlsI GCNGC 1 cut(s) 677
Bme1390I CCNGG 1 cut(s) 771
Bme18I GGWCC 1 cut(s) 767
BmeT110I CYCGRG 1 cut(s) 751
BmgT120I GGNCC 1 cut(s) 767
BmiI GGNNCC 2 cut(s) 332, 428
BmrFI CCNGG 1 cut(s) 771
BplI GAGNNNNNCTC 2 cut(s) 280, 312
BpmI CTGGAG 2 cut(s) 317, 413
BsaI GGTCTC 2 cut(s) 132, 300
BsaJI CCNNGG 2 cut(s) 210, 770
Bsc4I CCNNNNNNNGG 3 cut(s) 216, 291, 776
Bse1I ACTGG 1 cut(s) 420
Bse3DI GCAATG 2 cut(s) 646, 724
BseBI CCWGG 1 cut(s) 771
BseDI CCNNGG 2 cut(s) 210, 770
BseLI CCNNNNNNNGG 3 cut(s) 216, 291, 776
BseMI GCAATG 2 cut(s) 646, 724
BseMII CTCAG 1 cut(s) 290
BseNI ACTGG 1 cut(s) 420
BseRI GAGGAG 2 cut(s) 304, 714
Bsh1236I CGCG 1 cut(s) 441
BsiHKCI CYCGRG 1 cut(s) 751
BslI CCNNNNNNNGG 3 cut(s) 216, 291, 776
BsmAI GTCTC 5 cut(s) 132, 242, 300, 347, 443
Bso31I GGTCTC 2 cut(s) 132, 300
BsoBI CYCGRG 1 cut(s) 751
Bsp1286I GDGCHC 3 cut(s) 333, 429, 752
Bsp143I GATC 4 cut(s) 142, 184, 584, 805
Bsp19I CCATGG 1 cut(s) 210
BspACI CCGC 8 cut(s) 16, 61, 441, 489, 564, 630, 645, 675
BspCNI CTCAG 1 cut(s) 291
BspFNI CGCG 1 cut(s) 441
BspHI TCATGA 1 cut(s) 808
BspLI GGNNCC 2 cut(s) 332, 428
BspPI GGATC 2 cut(s) 137, 592
BspTNI GGTCTC 2 cut(s) 132, 300
BsrDI GCAATG 2 cut(s) 646, 724
BsrI ACTGG 1 cut(s) 420
BssECI CCNNGG 2 cut(s) 210, 770
BssMI GATC 4 cut(s) 142, 184, 584, 805
BssSI CACGAG 1 cut(s) 286
BssT1I CCWWGG 1 cut(s) 210
Bst2BI CACGAG 1 cut(s) 286
Bst2UI CCWGG 1 cut(s) 771
Bst4CI ACNGT 1 cut(s) 347
Bst6I CTCTTC 1 cut(s) 153
BstC8I GCNNGC 2 cut(s) 49, 53
BstDEI CTNAG 2 cut(s) 82, 299
BstDSI CCRYGG 1 cut(s) 210
BstFNI CGCG 1 cut(s) 441
BstHHI GCGC 1 cut(s) 441
BstKTI GATC 4 cut(s) 145, 187, 587, 808
BstMAI GTCTC 5 cut(s) 132, 242, 300, 347, 443
BstMBI GATC 4 cut(s) 142, 184, 584, 805
BstMWI GCNNNNNNNGC 4 cut(s) 15, 561, 636, 681
BstNI CCWGG 1 cut(s) 771
BstNSI RCATGY 1 cut(s) 55
BstSCI CCNGG 1 cut(s) 769
BstUI CGCG 1 cut(s) 441
BstX2I RGATCY 2 cut(s) 142, 584
BstYI RGATCY 2 cut(s) 142, 584
BtgI CCRYGG 1 cut(s) 210
BtgZI GCGATG 1 cut(s) 266
BtsI GCAGTG 3 cut(s) 556, 691, 730
BtsIMutI CAGTG 3 cut(s) 556, 691, 730
Cac8I GCNNGC 2 cut(s) 49, 53
CciI TCATGA 1 cut(s) 808
CfoI GCGC 1 cut(s) 441
Cfr13I GGNCC 1 cut(s) 767
Csp6I GTAC 1 cut(s) 272
CspCI CAANNNNNGTGG 4 cut(s) 628, 663, 706, 741
CviAII CATG 4 cut(s) 52, 211, 231, 809
CviQI GTAC 1 cut(s) 272
DdeI CTNAG 2 cut(s) 82, 299
DpnI GATC 4 cut(s) 144, 186, 586, 807
DpnII GATC 4 cut(s) 142, 184, 584, 805
Eam1104I CTCTTC 1 cut(s) 153
EarI CTCTTC 1 cut(s) 153
EciI GGCGGA 1 cut(s) 645
Eco130I CCWWGG 1 cut(s) 210
Eco24I GRGCYC 3 cut(s) 333, 429, 752
Eco31I GGTCTC 2 cut(s) 132, 300
Eco47I GGWCC 1 cut(s) 767
Eco88I CYCGRG 1 cut(s) 751
EcoRII CCWGG 1 cut(s) 769
EcoT14I CCWWGG 1 cut(s) 210
EcoT38I GRGCYC 3 cut(s) 333, 429, 752
ErhI CCWWGG 1 cut(s) 210
FaeI CATG 4 cut(s) 55, 214, 234, 812
FalI AAGNNNNNCTT 2 cut(s) 40, 72
FatI CATG 4 cut(s) 51, 210, 230, 808
FauI CCCGC 3 cut(s) 23, 68, 482
FauNDI CATATG 1 cut(s) 361
FbaI TGATCA 1 cut(s) 805
Fnu4HI GCNGC 1 cut(s) 676
FriOI GRGCYC 3 cut(s) 333, 429, 752
Fsp4HI GCNGC 1 cut(s) 676
FspBI CTAG 1 cut(s) 826
GlaI GCGC 1 cut(s) 440
GluI GCNGC 1 cut(s) 676
GsuI CTGGAG 2 cut(s) 317, 413
HhaI GCGC 1 cut(s) 441
Hin1II CATG 4 cut(s) 55, 214, 234, 812
Hin6I GCGC 1 cut(s) 439
HinP1I GCGC 1 cut(s) 439
HinfI GANTC 2 cut(s) 235, 660
HphI GGTGA 2 cut(s) 208, 551
Hpy166II GTNNAC 1 cut(s) 737
Hpy188I TCNGA 2 cut(s) 157, 300
Hpy188III TCNNGA 4 cut(s) 140, 334, 430, 809
Hpy8I GTNNAC 1 cut(s) 737
HpyAV CCTTC 4 cut(s) 66, 156, 160, 210
HpyCH4III ACNGT 1 cut(s) 347
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 4 cut(s) 15, 561, 636, 681
HpyF3I CTNAG 2 cut(s) 82, 299
Hsp92II CATG 4 cut(s) 55, 214, 234, 812
HspAI GCGC 1 cut(s) 439
Ksp22I TGATCA 1 cut(s) 805
Kzo9I GATC 4 cut(s) 142, 184, 584, 805
LmnI GCTCC 4 cut(s) 14, 336, 432, 816
MaeI CTAG 1 cut(s) 826
MaeIII GTNAC 1 cut(s) 196
MalI GATC 4 cut(s) 144, 186, 586, 807
MboI GATC 4 cut(s) 142, 184, 584, 805
MboII GAAGA 2 cut(s) 170, 473
MflI RGATCY 2 cut(s) 142, 584
MhlI GDGCHC 3 cut(s) 333, 429, 752
MluCI AATT 3 cut(s) 24, 119, 337
MlyI GAGTC 1 cut(s) 244
MspA1I CMGCKG 2 cut(s) 377, 473
MspR9I CCNGG 1 cut(s) 771
MvaI CCWGG 1 cut(s) 771
MvnI CGCG 1 cut(s) 441
MwoI GCNNNNNNNGC 4 cut(s) 15, 561, 636, 681
NcoI CCATGG 1 cut(s) 210
NdeI CATATG 1 cut(s) 361
NdeII GATC 4 cut(s) 142, 184, 584, 805
NlaIII CATG 4 cut(s) 55, 214, 234, 812
NlaIV GGNNCC 2 cut(s) 332, 428
NmeAIII GCCGAG 2 cut(s) 55, 111
NmuCI GTSAC 1 cut(s) 196
NspI RCATGY 1 cut(s) 55
PaeI GCATGC 1 cut(s) 55
PagI TCATGA 1 cut(s) 808
PfeI GAWTC 1 cut(s) 660
PflMI CCANNNNNTGG 1 cut(s) 776
PkrI GCNGC 1 cut(s) 677
PleI GAGTC 1 cut(s) 243
PpsI GAGTC 1 cut(s) 243
PsiI TTATAA 2 cut(s) 117, 402
Psp6I CCWGG 1 cut(s) 769
PspGI CCWGG 1 cut(s) 769
PspN4I GGNNCC 2 cut(s) 332, 428
PspPI GGNCC 1 cut(s) 767
PsuI RGATCY 2 cut(s) 142, 584
PvuII CAGCTG 2 cut(s) 377, 473
RsaI GTAC 1 cut(s) 273
RsaNI GTAC 1 cut(s) 272
SatI GCNGC 1 cut(s) 676
Sau3AI GATC 4 cut(s) 142, 184, 584, 805
Sau96I GGNCC 1 cut(s) 767
SchI GAGTC 1 cut(s) 244
ScrFI CCNGG 1 cut(s) 771
SduI GDGCHC 3 cut(s) 333, 429, 752
SinI GGWCC 1 cut(s) 767
SphI GCATGC 1 cut(s) 55
Sse9I AATT 3 cut(s) 24, 119, 337
SsiI CCGC 8 cut(s) 16, 61, 441, 489, 564, 630, 645, 675
SspMI CTAG 1 cut(s) 826
StyD4I CCNGG 1 cut(s) 769
StyI CCWWGG 1 cut(s) 210
TaaI ACNGT 1 cut(s) 347
TasI AATT 3 cut(s) 24, 119, 337
TauI GCSGC 1 cut(s) 678
TfiI GAWTC 1 cut(s) 660
TscAI CASTG 3 cut(s) 556, 691, 730
TseFI GTSAC 1 cut(s) 196
Tsp45I GTSAC 1 cut(s) 196
TspDTI ATGAA 2 cut(s) 219, 426
TspRI CASTG 3 cut(s) 556, 691, 730
Van91I CCANNNNNTGG 1 cut(s) 776
VpaK11BI GGWCC 1 cut(s) 767
XapI RAATTY 1 cut(s) 119
XceI RCATGY 1 cut(s) 55
XspI CTAG 1 cut(s) 826
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.