RchiOBHm_Chr6g0309291

Glycine-rich cell wall structural

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0018385
Physical Location & Seq
Forward (+)
67066794 .. 67067892
1099 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27812

Sequence Viewer

Length: 669 bp
ATGGGAAGGAGGGAGGTTTCATGGAGTCTCATTTTCTTGGCGATGGGGCTGGTTAGTTTTGTATCTGTTGAAGCCACGGGGAGGTCTCTGAGAGATAAGGGGAATGACTTGAACAAGGGGCTCCAGAATTGGCACGGTAAAGAGACTACATATGGAGAAATGACAGCTGGTGGTTTCGGGGGAGGGTCTTATAATAGAGATGAACTGGACAAGGGGCTCCAGAGTTGGCGCGGTAAAGAGACTACCTACGAAGAACTGACAGCTGGTGGTTATGGGGGCGGTTCTGGTTTCGGCTCTGGTGGTAGTGGGGGATTTGGCAGTGGGGGTGGTATAGGAAATGGTGGTGATGGTGGCAGTGGCTTTGGAGGCGGTGCTGGTTATGGGGGTGGATCTGGTAATGGTGGTGGATTGGGTGGTGGTTATGGAAATGGTGGCGGAGTTGGCAATGGCAGTGGGGGTGGTGGATTCGGTAATGGTGGCGGCTTTGGCAGTGGAGGTGGTGGAGGAGGTGGTGGCTTTGGCAATGGTAGTGGAGGAAGTGGACAAGGGGGGGCTCGGGCGTGGGGTCAGGTCCAGGGTATGGTGGTGGTGGTGGTGGCGGCGGTGGAGGATATGATCATGATGGGAGGAAAAACTAGGTCCAGGAAGATCTTCTCTAGAATAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

222

Amino Acids

21.24

Weight (kDa)

9.26

Isoelectric Point (pI)

31.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018385)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g33330
malus_domestica MD08G1087800.v1.1
prunus_persica Prupe.1G425300_v2.0.a1
pyrus_communis pycom15g06790
rosa_chinensis RchiOBHm_Chr6g0309291
rosa_laevigata RLG00000010576
rosa_multiflora Rmu_sc0015692.1_g000005
rosa_rugosa Rorug06G0370700
rosa_samantha Rh6AG484100
rosa_wichuraiana Rw6G042140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 192
AccB7I CCANNNNNTGG 1 cut(s) 580
AccII CGCG 1 cut(s) 231
AciI CCGC 7 cut(s) 231, 279, 369, 435, 480, 599, 602
AclWI GGATC 1 cut(s) 397
AfiI CCNNNNNNNGG 2 cut(s) 81, 580
AgsI TTSAA 2 cut(s) 71, 112
AjnI CCWGG 2 cut(s) 573, 641
AluBI AGCT 2 cut(s) 167, 263
AluI AGCT 2 cut(s) 167, 263
Alw26I GTCTC 4 cut(s) 32, 90, 137, 233
AlwI GGATC 1 cut(s) 397
Ama87I CYCGRG 1 cut(s) 555
Asp700I GAANNNNTTC 1 cut(s) 650
AspLEI GCGC 1 cut(s) 231
AspS9I GGNCC 2 cut(s) 571, 639
AsuHPI GGTGA 1 cut(s) 356
AvaI CYCGRG 1 cut(s) 555
AvaII GGWCC 2 cut(s) 571, 639
BanII GRGCYC 3 cut(s) 123, 219, 556
BccI CCATC 3 cut(s) 37, 341, 616
BciT130I CCWGG 2 cut(s) 575, 643
BclI TGATCA 1 cut(s) 615
BcoDI GTCTC 4 cut(s) 32, 90, 137, 233
BfaI CTAG 2 cut(s) 636, 657
BglII AGATCT 1 cut(s) 648
BisI GCNGC 2 cut(s) 481, 600
BlsI GCNGC 2 cut(s) 482, 601
Bme1390I CCNGG 2 cut(s) 575, 643
Bme18I GGWCC 2 cut(s) 571, 639
BmeT110I CYCGRG 1 cut(s) 555
BmgT120I GGNCC 2 cut(s) 571, 639
BmiI GGNNCC 2 cut(s) 122, 218
BmrFI CCNGG 2 cut(s) 575, 643
BpmI CTGGAG 2 cut(s) 107, 203
BsaI GGTCTC 1 cut(s) 90
BsaJI CCNNGG 2 cut(s) 75, 574
Bsc4I CCNNNNNNNGG 2 cut(s) 81, 580
Bse1I ACTGG 1 cut(s) 210
Bse3DI GCAATG 2 cut(s) 451, 529
BseBI CCWGG 2 cut(s) 575, 643
BseDI CCNNGG 2 cut(s) 75, 574
BseLI CCNNNNNNNGG 2 cut(s) 81, 580
BseMI GCAATG 2 cut(s) 451, 529
BseMII CTCAG 1 cut(s) 80
BseNI ACTGG 1 cut(s) 210
BseRI GAGGAG 1 cut(s) 519
Bsh1236I CGCG 1 cut(s) 231
BsiHKCI CYCGRG 1 cut(s) 555
BslI CCNNNNNNNGG 2 cut(s) 81, 580
BsmAI GTCTC 4 cut(s) 32, 90, 137, 233
Bso31I GGTCTC 1 cut(s) 90
BsoBI CYCGRG 1 cut(s) 555
Bsp1286I GDGCHC 3 cut(s) 123, 219, 556
Bsp143I GATC 3 cut(s) 389, 615, 648
BspACI CCGC 7 cut(s) 231, 279, 369, 435, 480, 599, 602
BspCNI CTCAG 1 cut(s) 81
BspFNI CGCG 1 cut(s) 231
BspHI TCATGA 1 cut(s) 618
BspLI GGNNCC 2 cut(s) 122, 218
BspPI GGATC 1 cut(s) 397
BspTNI GGTCTC 1 cut(s) 90
BsrDI GCAATG 2 cut(s) 451, 529
BsrI ACTGG 1 cut(s) 210
BssECI CCNNGG 2 cut(s) 75, 574
BssMI GATC 3 cut(s) 389, 615, 648
Bst2UI CCWGG 2 cut(s) 575, 643
Bst4CI ACNGT 1 cut(s) 137
BstDEI CTNAG 1 cut(s) 89
BstDSI CCRYGG 1 cut(s) 75
BstFNI CGCG 1 cut(s) 231
BstHHI GCGC 1 cut(s) 231
BstKTI GATC 3 cut(s) 392, 618, 651
BstMAI GTCTC 4 cut(s) 32, 90, 137, 233
BstMBI GATC 3 cut(s) 389, 615, 648
BstMWI GCNNNNNNNGC 3 cut(s) 366, 441, 486
BstNI CCWGG 2 cut(s) 575, 643
BstSCI CCNGG 2 cut(s) 573, 641
BstUI CGCG 1 cut(s) 231
BstX2I RGATCY 2 cut(s) 389, 648
BstYI RGATCY 2 cut(s) 389, 648
BtgI CCRYGG 1 cut(s) 75
BtgZI GCGATG 1 cut(s) 56
BtsI GCAGTG 4 cut(s) 325, 361, 457, 496
BtsIMutI CAGTG 4 cut(s) 325, 361, 457, 496
CciI TCATGA 1 cut(s) 618
CfoI GCGC 1 cut(s) 231
Cfr13I GGNCC 2 cut(s) 571, 639
CspCI CAANNNNNGTGG 4 cut(s) 433, 468, 511, 546
CviAII CATG 2 cut(s) 21, 619
DdeI CTNAG 1 cut(s) 89
DpnI GATC 3 cut(s) 391, 617, 650
DpnII GATC 3 cut(s) 389, 615, 648
EciI GGCGGA 1 cut(s) 450
Eco24I GRGCYC 3 cut(s) 123, 219, 556
Eco31I GGTCTC 1 cut(s) 90
Eco47I GGWCC 2 cut(s) 571, 639
Eco88I CYCGRG 1 cut(s) 555
EcoRII CCWGG 2 cut(s) 573, 641
EcoT38I GRGCYC 3 cut(s) 123, 219, 556
FaeI CATG 2 cut(s) 24, 622
FatI CATG 2 cut(s) 20, 618
FauNDI CATATG 1 cut(s) 151
FbaI TGATCA 1 cut(s) 615
Fnu4HI GCNGC 2 cut(s) 481, 600
FriOI GRGCYC 3 cut(s) 123, 219, 556
Fsp4HI GCNGC 2 cut(s) 481, 600
FspBI CTAG 2 cut(s) 636, 657
GlaI GCGC 1 cut(s) 230
GluI GCNGC 2 cut(s) 481, 600
GsuI CTGGAG 2 cut(s) 107, 203
HhaI GCGC 1 cut(s) 231
Hin1II CATG 2 cut(s) 24, 622
Hin6I GCGC 1 cut(s) 229
HinP1I GCGC 1 cut(s) 229
HinfI GANTC 2 cut(s) 25, 465
HphI GGTGA 1 cut(s) 356
Hpy166II GTNNAC 1 cut(s) 542
Hpy188I TCNGA 1 cut(s) 90
Hpy188III TCNNGA 4 cut(s) 124, 220, 619, 657
Hpy8I GTNNAC 1 cut(s) 542
HpyCH4III ACNGT 1 cut(s) 137
HpyF10VI GCNNNNNNNGC 3 cut(s) 366, 441, 486
HpyF3I CTNAG 1 cut(s) 89
Hsp92II CATG 2 cut(s) 24, 622
HspAI GCGC 1 cut(s) 229
Ksp22I TGATCA 1 cut(s) 615
Kzo9I GATC 3 cut(s) 389, 615, 648
LmnI GCTCC 2 cut(s) 126, 222
MaeI CTAG 2 cut(s) 636, 657
MalI GATC 3 cut(s) 391, 617, 650
MboI GATC 3 cut(s) 389, 615, 648
MboII GAAGA 3 cut(s) 263, 643, 658
MflI RGATCY 2 cut(s) 389, 648
MhlI GDGCHC 3 cut(s) 123, 219, 556
MluCI AATT 1 cut(s) 127
MlyI GAGTC 1 cut(s) 34
MroXI GAANNNNTTC 1 cut(s) 650
MspA1I CMGCKG 2 cut(s) 167, 263
MspR9I CCNGG 2 cut(s) 575, 643
MvaI CCWGG 2 cut(s) 575, 643
MvnI CGCG 1 cut(s) 231
MwoI GCNNNNNNNGC 3 cut(s) 366, 441, 486
NdeI CATATG 1 cut(s) 151
NdeII GATC 3 cut(s) 389, 615, 648
NlaIII CATG 2 cut(s) 24, 622
NlaIV GGNNCC 2 cut(s) 122, 218
PagI TCATGA 1 cut(s) 618
PdmI GAANNNNTTC 1 cut(s) 650
PfeI GAWTC 1 cut(s) 465
PflMI CCANNNNNTGG 1 cut(s) 580
PfoI TCCNGGA 1 cut(s) 641
PkrI GCNGC 2 cut(s) 482, 601
PleI GAGTC 1 cut(s) 33
PpsI GAGTC 1 cut(s) 33
PsiI TTATAA 1 cut(s) 192
Psp6I CCWGG 2 cut(s) 573, 641
PspGI CCWGG 2 cut(s) 573, 641
PspN4I GGNNCC 2 cut(s) 122, 218
PspPI GGNCC 2 cut(s) 571, 639
PsuI RGATCY 2 cut(s) 389, 648
PvuII CAGCTG 2 cut(s) 167, 263
SatI GCNGC 2 cut(s) 481, 600
Sau3AI GATC 3 cut(s) 389, 615, 648
Sau96I GGNCC 2 cut(s) 571, 639
SchI GAGTC 1 cut(s) 34
ScrFI CCNGG 2 cut(s) 575, 643
SduI GDGCHC 3 cut(s) 123, 219, 556
SetI ASST 9 cut(s) 18, 86, 169, 248, 265, 499, 511, 573, 641
SinI GGWCC 2 cut(s) 571, 639
Sse9I AATT 1 cut(s) 127
SsiI CCGC 7 cut(s) 231, 279, 369, 435, 480, 599, 602
SspMI CTAG 2 cut(s) 636, 657
StyD4I CCNGG 2 cut(s) 573, 641
TaaI ACNGT 1 cut(s) 137
TasI AATT 1 cut(s) 127
TauI GCSGC 2 cut(s) 483, 602
TfiI GAWTC 1 cut(s) 465
TscAI CASTG 4 cut(s) 325, 361, 457, 496
TspDTI ATGAA 2 cut(s) 9, 216
TspRI CASTG 4 cut(s) 325, 361, 457, 496
Van91I CCANNNNNTGG 1 cut(s) 580
VpaK11BI GGWCC 2 cut(s) 571, 639
XbaI TCTAGA 1 cut(s) 656
XmnI GAANNNNTTC 1 cut(s) 650
XspI CTAG 2 cut(s) 636, 657
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.