Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0016940

Physical Location & Seq

Genomic Coordinates Forward (+)

7512970 .. 7513995

Gene Structure 1026 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1090800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGATGGCACTTGAAAGCCTCGACTTCTCCTCAAACAACATCACAGGAATTCTCCCTCAAAATCTCAGCCAGTTGAAAAATCTCCGAGTCTTGAATTTGGCCCGAAACAATTTTTTGGGTGCGATCCCACCATCGATTAGCAACCTTTCATCCACCCTCACAAATTTGAATCTAGGTACAAATAGTTTCAGTGGTACTATACCTAGTGAATTAGGTCACCTCCATAAGCTCAAAGAACTCGACCTCGCCGGTAACCACCTCACCAGGACTATTGCCCCATCCATATACAACATCTCCTCTCTAGTTTTGTTCACTGTAGCTTCAAACCAACTGTGGGGTGAGATTCCTAGCAATATTGGTGACACACTTCCAAATCTTTTGTTCTTCAGAAATTGTTTCAATAAATTCACTGGAAAAATTCCTACTTCTCTACACAACATCTCTGGAATTCGATCAATTCGCATGTCTAACAACTTTCATGAAGGAACAGTTCCACCAGGCCTAGGGAATCTTCCATTCCTTGAAATGTACAACATTGGTTTCAATCGGATTGTTAGCTATGGAAAAGACGGTCTAAATTTCATTACTTCTTTGACAAACAGCACCCGTCTACAGTTCCTTGCGGTCGATGATAATCAATTGGAGGGTTTGATTCCGGAGTCCATAGGCAACCTTTCCAAATTTCTCCAAAGATTGTACATGGGAGGGAATCGAATCTACGGTGACATACCTTCCTCAATTGGTCACCTTAGTAGTTTGACTTTGCTAAATGTGAGCTATAATTCAATTTCTGGTGAAATCCCACCTGAAATAAGCCAACTGGAAGAATTGCAAATGCTTGGTTTAGCAGGAAACAAAATGTCTGGCCATATTCCAAACTCACTAGGTAATCTCAGAAAATTGAACAACATTGATTTATCTGGAAATTACTTTGTTGGTCGCATACCCCCTTCTTTTTCCAACTTTCATGAACTGCTTTCCATGGATTTATCTAACAATTTGCTGAATGGAAGCATTTCCGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0002764 GO:0003674 GO:0003824 GO:0004672 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008219 GO:0009595 GO:0009605 GO:0009607 GO:0009617 GO:0009626 GO:0009987 GO:0010204 GO:0010359 GO:0012501 GO:0012505 GO:0016020 GO:0016045 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0022898 GO:0023052 GO:0031347 GO:0031349 GO:0032409 GO:0032412 GO:0032879 GO:0033554 GO:0034050 GO:0034762 GO:0034765 GO:0036211 GO:0038023 GO:0043170 GO:0043207 GO:0043269 GO:0043412 GO:0044070 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051606 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0065009 GO:0071704 GO:0071944 GO:0080134 GO:0098543 GO:0098581 GO:0140096 GO:1901564 GO:1903959

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

342

Amino Acids

37.2

Weight (kDa)

6.71

Isoelectric Point (pI)

40.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_4	PF12799	4 - 44	7.8e-07	Leucine Rich repeats (2 copies)
LRR_14	PF23598	6 - 108	3.5e-06	Leucine-rich repeat region
LRR_8	PF13855	27 - 87	5.6e-07	Leucine rich repeat
LRR_14	PF23598	195 - 306	2.4e-11	Leucine-rich repeat region
LRR_8	PF13855	229 - 286	9.3e-08	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0016940)

Species	Orthologous Gene IDs
malus_domestica	MD08G1090800.v1.1
rosa_chinensis	RchiOBHm_Chr5g0066051
rosa_laevigata	RLG00000035837
rosa_multiflora	Rmu_co7961486.1_g000001 Rmu_co8477513.1_g000001
rosa_roxburghii	Rroxscaffold_2G00116380 Rroxscaffold_4G00314260
rosa_rugosa	Rorug01G0232000 Rorug05G0376100
rosa_samantha	Rh5BG450500 Rh5BG450600 Rh5BG450800 Rh5CG473100 Rh5DG464200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	610
AccIII	TCCGGA	2 cut(s)	655, 1019
AciI	CCGC	1 cut(s)	623
AclWI	GGATC	1 cut(s)	118
AcoI	YGGCCR	1 cut(s)	865
AcsI	RAATTY	8 cut(s)	48, 94, 163, 404, 417, 447, 577, 680
AcuI	CTGAAG	1 cut(s)	370
AfaI	GTAC	4 cut(s)	178, 196, 530, 698
AfiI	CCNNNNNNNGG	2 cut(s)	334, 503
AjnI	CCWGG	2 cut(s)	263, 496
AluBI	AGCT	4 cut(s)	229, 320, 558, 777
AluI	AGCT	4 cut(s)	229, 320, 558, 777
AlwI	GGATC	1 cut(s)	118
Aor13HI	TCCGGA	2 cut(s)	655, 1019
AoxI	GGCC	3 cut(s)	99, 499, 865
ApoI	RAATTY	8 cut(s)	48, 94, 163, 404, 417, 447, 577, 680
Asp700I	GAANNNNTTC	1 cut(s)	1015
AspA2I	CCTAGG	1 cut(s)	502
AspS9I	GGNCC	1 cut(s)	100
AsuHPI	GGTGA	7 cut(s)	209, 253, 350, 371, 734, 737, 806
AvrII	CCTAGG	1 cut(s)	502
BalI	TGGCCA	1 cut(s)	867
BccI	CCATC	2 cut(s)	139, 286
BciT130I	CCWGG	2 cut(s)	265, 498
BfaI	CTAG	6 cut(s)	173, 204, 302, 348, 503, 884
BfmI	CTRYAG	2 cut(s)	315, 611
BlnI	CCTAGG	1 cut(s)	502
Bme1390I	CCNGG	2 cut(s)	265, 498
BmgT120I	GGNCC	1 cut(s)	100
BmrFI	CCNGG	2 cut(s)	265, 498
Bsa29I	ATCGAT	1 cut(s)	134
BsaBI	GATNNNNATC	1 cut(s)	633
BsaJI	CCNNGG	2 cut(s)	502, 981
BsaWI	WCCGGW	2 cut(s)	655, 1019
BsaXI	ACNNNNNCTCC	2 cut(s)	278, 308
Bsc4I	CCNNNNNNNGG	2 cut(s)	334, 503
Bse118I	RCCGGY	1 cut(s)	248
Bse1I	ACTGG	3 cut(s)	70, 415, 825
Bse8I	GATNNNNATC	1 cut(s)	633
BseAI	TCCGGA	2 cut(s)	655, 1019
BseBI	CCWGG	2 cut(s)	265, 498
BseCI	ATCGAT	1 cut(s)	134
BseDI	CCNNGG	2 cut(s)	502, 981
BseGI	GGATG	2 cut(s)	149, 278
BseJI	GATNNNNATC	1 cut(s)	633
BseLI	CCNNNNNNNGG	2 cut(s)	334, 503
BseMII	CTCAG	2 cut(s)	79, 907
BseNI	ACTGG	3 cut(s)	70, 415, 825
BseRI	GAGGAG	2 cut(s)	19, 286
Bsh1285I	CGRYCG	1 cut(s)	627
BshFI	GGCC	3 cut(s)	101, 501, 867
BshVI	ATCGAT	1 cut(s)	134
BsiEI	CGRYCG	1 cut(s)	627
BsiSI	CCGG	3 cut(s)	249, 656, 1020
BslI	CCNNNNNNNGG	2 cut(s)	334, 503
BsnI	GGCC	3 cut(s)	101, 501, 867
Bsp13I	TCCGGA	2 cut(s)	655, 1019
Bsp1407I	TGTACA	2 cut(s)	528, 696
Bsp143I	GATC	2 cut(s)	123, 452
Bsp19I	CCATGG	1 cut(s)	981
BspACI	CCGC	1 cut(s)	623
BspANI	GGCC	3 cut(s)	101, 501, 867
BspCNI	CTCAG	2 cut(s)	78, 906
BspDI	ATCGAT	1 cut(s)	134
BspEI	TCCGGA	2 cut(s)	655, 1019
BspHI	TCATGA	2 cut(s)	478, 967
BspPI	GGATC	1 cut(s)	118
BsrFI	RCCGGY	1 cut(s)	248
BsrGI	TGTACA	2 cut(s)	528, 696
BsrI	ACTGG	3 cut(s)	70, 415, 825
BssAI	RCCGGY	1 cut(s)	248
BssECI	CCNNGG	2 cut(s)	502, 981
BssMI	GATC	2 cut(s)	123, 452
BssT1I	CCWWGG	2 cut(s)	502, 981
Bst2UI	CCWGG	2 cut(s)	265, 498
Bst4CI	ACNGT	6 cut(s)	316, 333, 490, 572, 615, 722
BstAUI	TGTACA	2 cut(s)	528, 696
BstDEI	CTNAG	3 cut(s)	65, 749, 893
BstDSI	CCRYGG	1 cut(s)	981
BstEII	GGTNACC	3 cut(s)	215, 251, 743
BstF5I	GGATG	2 cut(s)	149, 278
BstKTI	GATC	2 cut(s)	126, 455
BstMBI	GATC	2 cut(s)	123, 452
BstMCI	CGRYCG	1 cut(s)	627
BstNI	CCWGG	2 cut(s)	265, 498
BstNSI	RCATGY	1 cut(s)	466
BstPI	GGTNACC	3 cut(s)	215, 251, 743
BstSCI	CCNGG	2 cut(s)	263, 496
BstSFI	CTRYAG	2 cut(s)	315, 611
Bsu15I	ATCGAT	1 cut(s)	134
BsuRI	GGCC	3 cut(s)	101, 501, 867
BsuTUI	ATCGAT	1 cut(s)	134
BtgI	CCRYGG	1 cut(s)	981
BtsCI	GGATG	2 cut(s)	149, 278
BtsIMutI	CAGTG	3 cut(s)	196, 312, 408
CciI	TCATGA	2 cut(s)	478, 967
Cfr10I	RCCGGY	1 cut(s)	248
Cfr13I	GGNCC	1 cut(s)	100
ClaI	ATCGAT	1 cut(s)	134
Csp6I	GTAC	4 cut(s)	177, 195, 529, 697
CviAII	CATG	5 cut(s)	463, 479, 700, 968, 982
CviQI	GTAC	4 cut(s)	177, 195, 529, 697
DdeI	CTNAG	3 cut(s)	65, 749, 893
DpnI	GATC	2 cut(s)	125, 454
DpnII	GATC	2 cut(s)	123, 452
EaeI	YGGCCR	1 cut(s)	865
Eco130I	CCWWGG	2 cut(s)	502, 981
Eco147I	AGGCCT	1 cut(s)	501
Eco57I	CTGAAG	1 cut(s)	370
Eco91I	GGTNACC	3 cut(s)	215, 251, 743
EcoO65I	GGTNACC	3 cut(s)	215, 251, 743
EcoRI	GAATTC	2 cut(s)	48, 447
EcoRII	CCWGG	2 cut(s)	263, 496
EcoT14I	CCWWGG	2 cut(s)	502, 981
ErhI	CCWWGG	2 cut(s)	502, 981
FaeI	CATG	5 cut(s)	466, 482, 703, 971, 985
FatI	CATG	5 cut(s)	462, 478, 699, 967, 981
FblI	GTMKAC	1 cut(s)	610
FokI	GGATG	2 cut(s)	136, 265
FspBI	CTAG	6 cut(s)	173, 204, 302, 348, 503, 884
HaeIII	GGCC	3 cut(s)	101, 501, 867
HapII	CCGG	3 cut(s)	249, 656, 1020
Hin1II	CATG	5 cut(s)	466, 482, 703, 971, 985
HinfI	GANTC	8 cut(s)	87, 169, 343, 508, 652, 659, 709, 714
HpaII	CCGG	3 cut(s)	249, 656, 1020
HphI	GGTGA	7 cut(s)	209, 253, 350, 371, 734, 737, 806
Hpy166II	GTNNAC	2 cut(s)	312, 611
Hpy188I	TCNGA	4 cut(s)	86, 389, 549, 896
Hpy188III	TCNNGA	7 cut(s)	91, 444, 479, 656, 921, 968, 1020
Hpy8I	GTNNAC	2 cut(s)	312, 611
HpyAV	CCTTC	3 cut(s)	476, 741, 960
HpyCH4III	ACNGT	6 cut(s)	316, 333, 490, 572, 615, 722
HpyCH4V	TGCA	1 cut(s)	832
HpyF3I	CTNAG	3 cut(s)	65, 749, 893
Hsp92II	CATG	5 cut(s)	466, 482, 703, 971, 985
Kpn2I	TCCGGA	2 cut(s)	655, 1019
Kzo9I	GATC	2 cut(s)	123, 452
MaeI	CTAG	6 cut(s)	173, 204, 302, 348, 503, 884
MaeIII	GTNAC	5 cut(s)	215, 251, 359, 722, 743
MalI	GATC	2 cut(s)	125, 454
MboI	GATC	2 cut(s)	123, 452
MboII	GAAGA	3 cut(s)	376, 503, 836
MfeI	CAATTG	2 cut(s)	638, 738
MlsI	TGGCCA	1 cut(s)	867
MluNI	TGGCCA	1 cut(s)	867
MlyI	GAGTC	2 cut(s)	96, 668
MmeI	TCCRAC	1 cut(s)	984
Mox20I	TGGCCA	1 cut(s)	867
MroI	TCCGGA	2 cut(s)	655, 1019
MroXI	GAANNNNTTC	1 cut(s)	1015
MscI	TGGCCA	1 cut(s)	867
Msp20I	TGGCCA	1 cut(s)	867
MspI	CCGG	3 cut(s)	249, 656, 1020
MspR9I	CCNGG	2 cut(s)	265, 498
MunI	CAATTG	2 cut(s)	638, 738
MvaI	CCWGG	2 cut(s)	265, 498
NcoI	CCATGG	1 cut(s)	981
NdeII	GATC	2 cut(s)	123, 452
NlaIII	CATG	5 cut(s)	466, 482, 703, 971, 985
NmuCI	GTSAC	4 cut(s)	215, 359, 722, 743
NspI	RCATGY	1 cut(s)	466
PagI	TCATGA	2 cut(s)	478, 967
PceI	AGGCCT	1 cut(s)	501
PdmI	GAANNNNTTC	1 cut(s)	1015
PfeI	GAWTC	6 cut(s)	169, 343, 508, 652, 709, 714
PleI	GAGTC	2 cut(s)	95, 667
PpsI	GAGTC	2 cut(s)	95, 667
Psp6I	CCWGG	2 cut(s)	263, 496
PspEI	GGTNACC	3 cut(s)	215, 251, 743
PspGI	CCWGG	2 cut(s)	263, 496
PspPI	GGNCC	1 cut(s)	100
RsaI	GTAC	4 cut(s)	178, 196, 530, 698
RsaNI	GTAC	4 cut(s)	177, 195, 529, 697
Sau3AI	GATC	2 cut(s)	123, 452
Sau96I	GGNCC	1 cut(s)	100
SchI	GAGTC	2 cut(s)	96, 668
ScrFI	CCNGG	2 cut(s)	265, 498
SfcI	CTRYAG	2 cut(s)	315, 611
SseBI	AGGCCT	1 cut(s)	501
SsiI	CCGC	1 cut(s)	623
SspI	AATATT	1 cut(s)	355
SspMI	CTAG	6 cut(s)	173, 204, 302, 348, 503, 884
StuI	AGGCCT	1 cut(s)	501
StyD4I	CCNGG	2 cut(s)	263, 496
StyI	CCWWGG	2 cut(s)	502, 981
TaaI	ACNGT	6 cut(s)	316, 333, 490, 572, 615, 722
TaqI	TCGA	6 cut(s)	21, 134, 240, 451, 627, 712
TatI	WGTACW	2 cut(s)	528, 696
TfiI	GAWTC	6 cut(s)	169, 343, 508, 652, 709, 714
TscAI	CASTG	3 cut(s)	196, 319, 415
TseFI	GTSAC	4 cut(s)	215, 359, 722, 743
Tsp45I	GTSAC	4 cut(s)	215, 359, 722, 743
TspDTI	ATGAA	6 cut(s)	138, 467, 495, 571, 956, 984
TspRI	CASTG	3 cut(s)	196, 319, 415
XapI	RAATTY	8 cut(s)	48, 94, 163, 404, 417, 447, 577, 680
XceI	RCATGY	1 cut(s)	466
XmaJI	CCTAGG	1 cut(s)	502
XmiI	GTMKAC	1 cut(s)	610
XmnI	GAANNNNTTC	1 cut(s)	1015
XspI	CTAG	6 cut(s)	173, 204, 302, 348, 503, 884

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.