Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0016940

Physical Location & Seq

Genomic Coordinates Forward (+)

66115491 .. 66117557

Gene Structure 2067 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG473100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGAAACACTTCCAAACCACTTATCCTACCGGAACTGTTTTTAACATAATGACGGGAAAATCCATTGTCTTTGCACAATATCACCAGGATCCAATAATTCGAATGTCAAACAATTTTCTGGAAGGAACAGTTCCACCAGGGCTACGAAATTTGCCATTCATTGAAATGTACACCATTGGCTTTAATCGGATCATTAGTTATGACAACACTGTTCTCAGTTATCTTACTTCTCTGACAAACAGCGCTCGTCTGCAGTTTGTTACCATGGACGACAATGAGTTGGAGGGAGTCATTCCAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0002764 GO:0003674 GO:0003824 GO:0004672 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008219 GO:0009595 GO:0009605 GO:0009607 GO:0009617 GO:0009626 GO:0009987 GO:0010204 GO:0010359 GO:0012501 GO:0012505 GO:0016020 GO:0016045 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0022898 GO:0023052 GO:0031347 GO:0031349 GO:0032409 GO:0032412 GO:0032879 GO:0033554 GO:0034050 GO:0034762 GO:0034765 GO:0036211 GO:0038023 GO:0043170 GO:0043207 GO:0043269 GO:0043412 GO:0044070 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051606 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0065009 GO:0071704 GO:0071944 GO:0080134 GO:0098543 GO:0098581 GO:0140096 GO:1901564 GO:1903959

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

100

Amino Acids

11.43

Weight (kDa)

5.19

Isoelectric Point (pI)

34.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016940)

Species	Orthologous Gene IDs
malus_domestica	MD08G1090800.v1.1
rosa_chinensis	RchiOBHm_Chr5g0066051
rosa_laevigata	RLG00000035837
rosa_multiflora	Rmu_co7961486.1_g000001 Rmu_co8477513.1_g000001
rosa_roxburghii	Rroxscaffold_2G00116380 Rroxscaffold_4G00314260
rosa_rugosa	Rorug01G0232000 Rorug05G0376100
rosa_samantha	Rh5BG450500 Rh5BG450600 Rh5BG450800 Rh5CG473100 Rh5DG464200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	83, 96, 197
AcsI	RAATTY	1 cut(s)	148
AfaI	GTAC	1 cut(s)	170
AfeI	AGCGCT	1 cut(s)	244
AgsI	TTSAA	1 cut(s)	164
AjnI	CCWGG	2 cut(s)	84, 136
AlwI	GGATC	3 cut(s)	83, 96, 197
Aor51HI	AGCGCT	1 cut(s)	244
ApoI	RAATTY	1 cut(s)	148
Asp700I	GAANNNNTTC	1 cut(s)	8
AspLEI	GCGC	1 cut(s)	245
AsuHPI	GGTGA	1 cut(s)	74
AsuII	TTCGAA	1 cut(s)	100
BamHI	GGATCC	1 cut(s)	88
BciT130I	CCWGG	2 cut(s)	86, 138
BfmI	CTRYAG	1 cut(s)	251
BfoI	RGCGCY	1 cut(s)	246
Bme1390I	CCNGG	2 cut(s)	86, 138
BmiI	GGNNCC	1 cut(s)	90
BmrFI	CCNGG	2 cut(s)	86, 138
Bpu14I	TTCGAA	1 cut(s)	100
BsaJI	CCNNGG	2 cut(s)	137, 264
BsaWI	WCCGGW	1 cut(s)	29
BseBI	CCWGG	2 cut(s)	86, 138
BseDI	CCNNGG	2 cut(s)	137, 264
BseMII	CTCAG	1 cut(s)	229
BsiSI	CCGG	1 cut(s)	30
Bsp119I	TTCGAA	1 cut(s)	100
Bsp1407I	TGTACA	1 cut(s)	168
Bsp143I	GATC	2 cut(s)	88, 189
Bsp19I	CCATGG	1 cut(s)	264
BspCNI	CTCAG	1 cut(s)	228
BspLI	GGNNCC	1 cut(s)	90
BspMAI	CTGCAG	1 cut(s)	255
BspPI	GGATC	3 cut(s)	83, 96, 197
BspT104I	TTCGAA	1 cut(s)	100
BsrGI	TGTACA	1 cut(s)	168
BssECI	CCNNGG	2 cut(s)	137, 264
BssMI	GATC	2 cut(s)	88, 189
BssT1I	CCWWGG	1 cut(s)	264
Bst2UI	CCWGG	2 cut(s)	86, 138
Bst4CI	ACNGT	3 cut(s)	37, 130, 211
BstAUI	TGTACA	1 cut(s)	168
BstBI	TTCGAA	1 cut(s)	100
BstDEI	CTNAG	1 cut(s)	215
BstDSI	CCRYGG	1 cut(s)	264
BstH2I	RGCGCY	1 cut(s)	246
BstHHI	GCGC	1 cut(s)	245
BstKTI	GATC	2 cut(s)	91, 192
BstMBI	GATC	2 cut(s)	88, 189
BstNI	CCWGG	2 cut(s)	86, 138
BstSCI	CCNGG	2 cut(s)	84, 136
BstSFI	CTRYAG	1 cut(s)	251
BstX2I	RGATCY	1 cut(s)	88
BstYI	RGATCY	1 cut(s)	88
BtgI	CCRYGG	1 cut(s)	264
BtsIMutI	CAGTG	1 cut(s)	207
CfoI	GCGC	1 cut(s)	245
Csp6I	GTAC	1 cut(s)	169
CviAII	CATG	1 cut(s)	265
CviJI	RGCY	2 cut(s)	142, 180
CviKI_1	RGCY	2 cut(s)	142, 180
CviQI	GTAC	1 cut(s)	169
DdeI	CTNAG	1 cut(s)	215
DpnI	GATC	2 cut(s)	90, 191
DpnII	GATC	2 cut(s)	88, 189
Eco130I	CCWWGG	1 cut(s)	264
Eco47III	AGCGCT	1 cut(s)	244
EcoRII	CCWGG	2 cut(s)	84, 136
EcoT14I	CCWWGG	1 cut(s)	264
ErhI	CCWWGG	1 cut(s)	264
FaeI	CATG	1 cut(s)	268
FaiI	YATR	3 cut(s)	47, 201, 266
FatI	CATG	1 cut(s)	264
GlaI	GCGC	1 cut(s)	244
HaeII	RGCGCY	1 cut(s)	246
HapII	CCGG	1 cut(s)	30
HhaI	GCGC	1 cut(s)	245
Hin1II	CATG	1 cut(s)	268
Hin6I	GCGC	1 cut(s)	243
HinP1I	GCGC	1 cut(s)	243
HinfI	GANTC	1 cut(s)	288
HpaII	CCGG	1 cut(s)	30
HphI	GGTGA	1 cut(s)	74
Hpy166II	GTNNAC	1 cut(s)	171
Hpy188I	TCNGA	2 cut(s)	189, 234
Hpy188III	TCNNGA	2 cut(s)	119, 296
Hpy8I	GTNNAC	1 cut(s)	171
HpyAV	CCTTC	1 cut(s)	116
HpyCH4III	ACNGT	3 cut(s)	37, 130, 211
HpyCH4V	TGCA	2 cut(s)	74, 253
HpyF3I	CTNAG	1 cut(s)	215
Hsp92II	CATG	1 cut(s)	268
HspAI	GCGC	1 cut(s)	243
Kzo9I	GATC	2 cut(s)	88, 189
LpnPI	CCDG	6 cut(s)	43, 71, 98, 104, 123, 150
MaeIII	GTNAC	1 cut(s)	259
MalI	GATC	2 cut(s)	90, 191
MboI	GATC	2 cut(s)	88, 189
MflI	RGATCY	1 cut(s)	88
MluCI	AATT	3 cut(s)	96, 112, 148
MlyI	GAGTC	1 cut(s)	297
MmeI	TCCRAC	1 cut(s)	261
MnlI	CCTC	1 cut(s)	277
MroXI	GAANNNNTTC	1 cut(s)	8
MseI	TTAA	2 cut(s)	42, 183
MslI	CAYNNNNRTG	1 cut(s)	164
MspI	CCGG	1 cut(s)	30
MspR9I	CCNGG	2 cut(s)	86, 138
MvaI	CCWGG	2 cut(s)	86, 138
NcoI	CCATGG	1 cut(s)	264
NdeII	GATC	2 cut(s)	88, 189
NlaIII	CATG	1 cut(s)	268
NlaIV	GGNNCC	1 cut(s)	90
NspV	TTCGAA	1 cut(s)	100
PdmI	GAANNNNTTC	1 cut(s)	8
PleI	GAGTC	1 cut(s)	296
PpsI	GAGTC	1 cut(s)	296
Psp6I	CCWGG	2 cut(s)	84, 136
PspGI	CCWGG	2 cut(s)	84, 136
PspN4I	GGNNCC	1 cut(s)	90
PstI	CTGCAG	1 cut(s)	255
PsuI	RGATCY	1 cut(s)	88
RsaI	GTAC	1 cut(s)	170
RsaNI	GTAC	1 cut(s)	169
RseI	CAYNNNNRTG	1 cut(s)	164
SaqAI	TTAA	2 cut(s)	42, 183
Sau3AI	GATC	2 cut(s)	88, 189
SchI	GAGTC	1 cut(s)	297
ScrFI	CCNGG	2 cut(s)	86, 138
SfcI	CTRYAG	1 cut(s)	251
SfuI	TTCGAA	1 cut(s)	100
SgeI	CNNG	9 cut(s)	42, 66, 97, 98, 131, 149, 150, 258, 277
SmiMI	CAYNNNNRTG	1 cut(s)	164
Sse9I	AATT	3 cut(s)	96, 112, 148
StyD4I	CCNGG	2 cut(s)	84, 136
StyI	CCWWGG	1 cut(s)	264
TaaI	ACNGT	3 cut(s)	37, 130, 211
TaqI	TCGA	1 cut(s)	100
TasI	AATT	3 cut(s)	96, 112, 148
TatI	WGTACW	1 cut(s)	168
Tru1I	TTAA	2 cut(s)	42, 183
Tru9I	TTAA	2 cut(s)	42, 183
TscAI	CASTG	1 cut(s)	214
TspDTI	ATGAA	2 cut(s)	17, 148
TspRI	CASTG	1 cut(s)	214
XapI	RAATTY	1 cut(s)	148
XmnI	GAANNNNTTC	1 cut(s)	8

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.