Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8477513.1

Orthogroup ID

OG0016940

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1970

Gene Structure 1970 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8477513.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

aaaagaaacggctgcagagcaaaaattacagaaacttgtgatgacttagtagtcacagggcagcatcaaatggtatcatgtgaaaagctccgtggctcaacagggaatttcaaccaggaaaatttggttggaaaggggagctttggttctgtatataaaggatttcttaaagaccaaggaatcgaagttgcagtcaaggctagcttggactccaaggacatggagtttctggctttggtttatgagtatttaagcaatgggagcttggaagattggattaagggtaagaggaaaaatggtgatggagccgggttcagcattttggagagattgaatgtggcaattgatgttgcttatggattggattacctgcataatgattgtgaagttccagtggctcactgtgatttgaagccaaacaacattcttttggataaagacatgattgcaaagttggagatttgggctggctcagttgctgatagagggatcaggcactcaacattctcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0002764 GO:0003674 GO:0003824 GO:0004672 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008219 GO:0009595 GO:0009605 GO:0009607 GO:0009617 GO:0009626 GO:0009987 GO:0010204 GO:0010359 GO:0012501 GO:0012505 GO:0016020 GO:0016045 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0022898 GO:0023052 GO:0031347 GO:0031349 GO:0032409 GO:0032412 GO:0032879 GO:0033554 GO:0034050 GO:0034762 GO:0034765 GO:0036211 GO:0038023 GO:0043170 GO:0043207 GO:0043269 GO:0043412 GO:0044070 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051606 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0065009 GO:0071704 GO:0071944 GO:0080134 GO:0098543 GO:0098581 GO:0140096 GO:1901564 GO:1903959

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

170

Amino Acids

18.72

Weight (kDa)

5.82

Isoelectric Point (pI)

18.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016940)

Species	Orthologous Gene IDs
malus_domestica	MD08G1090800.v1.1
rosa_chinensis	RchiOBHm_Chr5g0066051
rosa_laevigata	RLG00000035837
rosa_multiflora	Rmu_co7961486.1_g000001 Rmu_co8477513.1_g000001
rosa_roxburghii	Rroxscaffold_2G00116380 Rroxscaffold_4G00314260
rosa_rugosa	Rorug01G0232000 Rorug05G0376100
rosa_samantha	Rh5BG450500 Rh5BG450600 Rh5BG450800 Rh5CG473100 Rh5DG464200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	50
Acc36I	ACCTGC	1 cut(s)	378
AclWI	GGATC	1 cut(s)	497
AcsI	RAATTY	2 cut(s)	106, 121
AgsI	TTSAA	3 cut(s)	112, 334, 412
AjnI	CCWGG	1 cut(s)	114
AjuI	GAANNNNNNNTTGG	2 cut(s)	111, 143
AloI	GAACNNNNNNTCC	2 cut(s)	130, 162
AluBI	AGCT	4 cut(s)	88, 141, 204, 264
AluI	AGCT	4 cut(s)	88, 141, 204, 264
AlwI	GGATC	1 cut(s)	497
AlwNI	CAGNNNCTG	1 cut(s)	479
ApeKI	GCWGC	2 cut(s)	12, 61
ApoI	RAATTY	2 cut(s)	106, 121
ArsI	GACNNNNNNTTYG	2 cut(s)	177, 209
AsuC2I	CCSGG	1 cut(s)	310
AsuHPI	GGTGA	1 cut(s)	311
AsuNHI	GCTAGC	1 cut(s)	200
BbvI	GCAGC	1 cut(s)	73
BccI	CCATC	1 cut(s)	296
BceAI	ACGGC	1 cut(s)	25
BciT130I	CCWGG	1 cut(s)	116
BcnI	CCSGG	1 cut(s)	310
BfaI	CTAG	1 cut(s)	201
BfmI	CTRYAG	1 cut(s)	13
BfuAI	ACCTGC	1 cut(s)	378
BisI	GCNGC	2 cut(s)	13, 62
BlsI	GCNGC	2 cut(s)	14, 63
Bme1390I	CCNGG	2 cut(s)	116, 310
BmiI	GGNNCC	1 cut(s)	307
BmrFI	CCNGG	2 cut(s)	116, 310
BmsI	GCATC	1 cut(s)	73
BmtI	GCTAGC	1 cut(s)	204
BpuMI	CCSGG	1 cut(s)	310
BsaJI	CCNNGG	3 cut(s)	91, 175, 213
BsaXI	ACNNNNNCTCC	2 cut(s)	130, 160
Bse1I	ACTGG	1 cut(s)	392
Bse3DI	GCAATG	1 cut(s)	262
BseBI	CCWGG	1 cut(s)	116
BseDI	CCNNGG	3 cut(s)	91, 175, 213
BseMI	GCAATG	1 cut(s)	262
BseMII	CTCAG	1 cut(s)	486
BseNI	ACTGG	1 cut(s)	392
BseXI	GCAGC	1 cut(s)	73
BsiSI	CCGG	1 cut(s)	309
Bsp143I	GATC	1 cut(s)	489
BspCNI	CTCAG	1 cut(s)	485
BspLI	GGNNCC	1 cut(s)	307
BspMAI	CTGCAG	1 cut(s)	17
BspMI	ACCTGC	1 cut(s)	378
BspOI	GCTAGC	1 cut(s)	204
BspPI	GGATC	1 cut(s)	497
BsrDI	GCAATG	1 cut(s)	262
BsrI	ACTGG	1 cut(s)	392
BssECI	CCNNGG	3 cut(s)	91, 175, 213
BssMI	GATC	1 cut(s)	489
BssT1I	CCWWGG	2 cut(s)	175, 213
Bst2UI	CCWGG	1 cut(s)	116
Bst4CI	ACNGT	1 cut(s)	404
BstC8I	GCNNGC	2 cut(s)	202, 469
BstDEI	CTNAG	2 cut(s)	46, 472
BstDSI	CCRYGG	1 cut(s)	91
BstKTI	GATC	1 cut(s)	492
BstMBI	GATC	1 cut(s)	489
BstMWI	GCNNNNNNNGC	2 cut(s)	197, 261
BstNI	CCWGG	1 cut(s)	116
BstSCI	CCNGG	2 cut(s)	114, 308
BstSFI	CTRYAG	1 cut(s)	13
BstV1I	GCAGC	1 cut(s)	73
BstXI	CCANNNNNNTGG	1 cut(s)	220
BtgI	CCRYGG	1 cut(s)	91
BtsIMutI	CAGTG	2 cut(s)	399, 400
BveI	ACCTGC	1 cut(s)	378
Cac8I	GCNNGC	2 cut(s)	202, 469
CaiI	CAGNNNCTG	1 cut(s)	479
CviAII	CATG	3 cut(s)	78, 220, 442
DdeI	CTNAG	2 cut(s)	46, 472
DpnI	GATC	1 cut(s)	491
DpnII	GATC	1 cut(s)	489
DrdI	GACNNNNNNGTC	1 cut(s)	50
DseDI	GACNNNNNNGTC	1 cut(s)	50
Eco130I	CCWWGG	2 cut(s)	175, 213
EcoRII	CCWGG	1 cut(s)	114
EcoT14I	CCWWGG	2 cut(s)	175, 213
ErhI	CCWWGG	2 cut(s)	175, 213
FaeI	CATG	3 cut(s)	81, 223, 445
FaiI	YATR	8 cut(s)	79, 154, 156, 221, 243, 357, 375, 443
FalI	AAGNNNNNCTT	6 cut(s)	125, 157, 150, 182, 188, 220
FatI	CATG	3 cut(s)	77, 219, 441
Fnu4HI	GCNGC	2 cut(s)	13, 62
Fsp4HI	GCNGC	2 cut(s)	13, 62
FspBI	CTAG	1 cut(s)	201
GluI	GCNGC	2 cut(s)	13, 62
HapII	CCGG	1 cut(s)	309
Hin1II	CATG	3 cut(s)	81, 223, 445
HinfI	GANTC	2 cut(s)	180, 209
HpaII	CCGG	1 cut(s)	309
HphI	GGTGA	1 cut(s)	311
Hpy188III	TCNNGA	1 cut(s)	510
HpyCH4III	ACNGT	1 cut(s)	404
HpyCH4V	TGCA	4 cut(s)	15, 191, 373, 449
HpyF10VI	GCNNNNNNNGC	2 cut(s)	197, 261
HpyF3I	CTNAG	2 cut(s)	46, 472
Hsp92II	CATG	3 cut(s)	81, 223, 445
Kzo9I	GATC	1 cut(s)	489
LmnI	GCTCC	4 cut(s)	93, 138, 261, 305
Lsp1109I	GCAGC	1 cut(s)	73
LweI	GCATC	1 cut(s)	73
MaeI	CTAG	1 cut(s)	201
MaeIII	GTNAC	1 cut(s)	52
MalI	GATC	1 cut(s)	491
MboI	GATC	1 cut(s)	489
MboII	GAAGA	1 cut(s)	281
MfeI	CAATTG	1 cut(s)	342
MluCI	AATT	4 cut(s)	24, 106, 121, 342
MlyI	GAGTC	1 cut(s)	203
MmeI	TCCRAC	2 cut(s)	109, 435
MnlI	CCTC	2 cut(s)	282, 479
MseI	TTAA	3 cut(s)	168, 251, 279
MspI	CCGG	1 cut(s)	309
MspR9I	CCNGG	2 cut(s)	116, 310
MunI	CAATTG	1 cut(s)	342
MvaI	CCWGG	1 cut(s)	116
MwoI	GCNNNNNNNGC	2 cut(s)	197, 261
NciI	CCSGG	1 cut(s)	310
NdeII	GATC	1 cut(s)	489
NheI	GCTAGC	1 cut(s)	200
NlaIII	CATG	3 cut(s)	81, 223, 445
NlaIV	GGNNCC	1 cut(s)	307
NmuCI	GTSAC	1 cut(s)	52
PfeI	GAWTC	1 cut(s)	180
PkrI	GCNGC	2 cut(s)	14, 63
PleI	GAGTC	1 cut(s)	203
PpsI	GAGTC	1 cut(s)	203
Psp6I	CCWGG	1 cut(s)	114
PspGI	CCWGG	1 cut(s)	114
PspN4I	GGNNCC	1 cut(s)	307
PstI	CTGCAG	1 cut(s)	17
PstNI	CAGNNNCTG	1 cut(s)	479
SaqAI	TTAA	3 cut(s)	168, 251, 279
SatI	GCNGC	2 cut(s)	13, 62
Sau3AI	GATC	1 cut(s)	489
SchI	GAGTC	1 cut(s)	203
ScrFI	CCNGG	2 cut(s)	116, 310
SetI	ASST	5 cut(s)	90, 143, 206, 266, 372
SfaNI	GCATC	1 cut(s)	73
SfcI	CTRYAG	1 cut(s)	13
Sse9I	AATT	4 cut(s)	24, 106, 121, 342
SspMI	CTAG	1 cut(s)	201
StyD4I	CCNGG	2 cut(s)	114, 308
StyI	CCWWGG	2 cut(s)	175, 213
TaaI	ACNGT	1 cut(s)	404
TaqI	TCGA	1 cut(s)	183
TasI	AATT	4 cut(s)	24, 106, 121, 342
TfiI	GAWTC	1 cut(s)	180
Tru1I	TTAA	3 cut(s)	168, 251, 279
Tru9I	TTAA	3 cut(s)	168, 251, 279
TscAI	CASTG	2 cut(s)	399, 407
TseFI	GTSAC	1 cut(s)	52
TseI	GCWGC	2 cut(s)	12, 61
Tsp45I	GTSAC	1 cut(s)	52
TspGWI	ACGGA	1 cut(s)	80
TspRI	CASTG	2 cut(s)	399, 407
XapI	RAATTY	2 cut(s)	106, 121
XspI	CTAG	1 cut(s)	201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.