RLG00000035837
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Forward (+)
72487329 .. 72489677
2349 bp
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UTR
Exon/CDS
Intron
RLM00000035837

Sequence Viewer

Length: 1476 bp
ATGTCAAACAATTTTCTGGAAGGAACAGTTCCACCAGGGCTAGGAAATTTGCCATTCCTTGAAATGTACACCATTGGTTTTAATCGGATCATTAGCTATGGCAGCAACGGTCTCAGTTTTCTTACTTCTCTGACAAACTACAGTCGTCTGCTGTTTGTTACCATGGATGACAGTGAGTTGGAGGGCGCCATTCCAGAATCACTAGGCAATCTCTCCAAGGTTCTCTCAAAATTGTACAGGGGAGGGAATCGAATTTATGGTAACATTCCCACCTCAGTTGGAAATGAAATGTCTGGCCAAATTCCAAACTCCATGGGCAACCTCAAAAAGTTGAACAAAATTGATTTATCGGGGAATAACTTTGTTGGCCAAATACCCTCTTCTTTTTCAAACTTCCGGAATCTGCTTGCCACGGACTTATTGTTCATTCCAAGAAATAGATTCTCGGATCATATTCCCACTGCTATAGGAGAATTGAGAGGCCTCGAGTTTGTAGACTTCCCCTTAAACCAGCTTTCTGGCTCCATTCCTAAAAATCTTCAAGACCTACACGCCCTTCAATACTTGAACCTATCATTTAATCACTTAGAAGGAGTGATTGCTAATAGTGGAGAATTTGTCAAAAATTTCACTAATGTTTATCTGGAAGGCAACCCAGAAATTTGCCTCAAATTTGCAAATTTAAATCAACCATACCACTGTGTTATAGTGAGCTGTTTGGTCTATGCTAAGAAAAGAAAATGCTGCAGAGCAAAAATTACAGAAACTTGTGATTGGAAAGGGCAGCATCAAATGGTGTCCGATGAAGAACTCCGTGGCTCAACTGGGAATTTCAACCAGGAAAATTTGGTTGGAAAGGGGAGCTTTGGTTCTGTATATGAAGGATTTCTTAAAGACCAAGGAATTGAAGTTGCAGTCAAGGTGCTCAATATAAGAACAGCAGGATCTTGGAAGAGTTTCTTTGCAGAGTGTAACGCCTTACGGAGTTTAAGGCACCGAAATCTTATCAAACTTATCACATCCTGCTCGAGCTTGGACTCCAAGAACATGGAGTTTCTGGCTTTGATTTATGAGTATTTAAGGCAAGAGGAAGATGCCGATGGAGCTGGGTTCAGCATTGTGGAAAGATTGAATGTGGCAATTGATGTTGCTTGTGGATTGGATTACCTGCATTATGATTGTGAGGTTCCAGTGGCTCACTGTGATTTGAAGCCAAGAAACATTCTTTTGGACAAAGATATGATTGCAAAGGTTGGAGATTTTGGGCTGGCTAAGTTGCTGGTAGAGGGATCAGGCACTCAACATTCTCTTGACTCCACAAATACCCTCAAGGGTTCCATAGGATATGAACTCTCAGTTATCGAGGTCGAGCTTTGCTGCACTGTTACCTCTCCAGACGAACGCATTAGCTTTAGGGATGCCGTTCACAAACTTGAAACTGCTAGAGAGACCCTTTTGAAGCTATGCTCACTTTGA

Protein Analysis

492

Amino Acids

54.43

Weight (kDa)

5.77

Isoelectric Point (pI)

28.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 99 - 196 6.6e-06 Leucine-rich repeat region
Pkinase PF00069 278 - 440 2.1e-27 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 281 - 431 5.9e-25 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1176
AccB1I GGYRCC 2 cut(s) 185, 993
AccI GTMKAC 1 cut(s) 495
AccIII TCCGGA 1 cut(s) 396
AclWI GGATC 4 cut(s) 95, 456, 952, 1297
AcoI YGGCCR 2 cut(s) 295, 367
AcyI GRCGYC 1 cut(s) 186
AfaI GTAC 2 cut(s) 68, 236
AfiI CCNNNNNNNGG 1 cut(s) 41
AjnI CCWGG 2 cut(s) 34, 837
AjuI GAANNNNNNNTTGG 2 cut(s) 834, 866
AloI GAACNNNNNNTCC 4 cut(s) 407, 439, 853, 885
AluBI AGCT 9 cut(s) 96, 514, 714, 864, 1032, 1106, 1372, 1410, 1462
AluI AGCT 9 cut(s) 96, 514, 714, 864, 1032, 1106, 1372, 1410, 1462
Alw21I GWGCWC 1 cut(s) 927
Alw26I GTCTC 2 cut(s) 116, 1442
AlwI GGATC 4 cut(s) 95, 456, 952, 1297
Ama87I CYCGRG 2 cut(s) 485, 1027
Aor13HI TCCGGA 1 cut(s) 396
AoxI GGCC 3 cut(s) 295, 367, 481
ApeKI GCWGC 4 cut(s) 102, 744, 784, 1377
Asp700I GAANNNNTTC 2 cut(s) 885, 956
AspLEI GCGC 1 cut(s) 188
AvaI CYCGRG 2 cut(s) 485, 1027
BalI TGGCCA 2 cut(s) 297, 369
BanI GGYRCC 2 cut(s) 185, 993
Bbv12I GWGCWC 1 cut(s) 927
BbvI GCAGC 4 cut(s) 114, 731, 796, 1364
BccI CCATC 1 cut(s) 1094
BceAI ACGGC 1 cut(s) 1406
BciT130I CCWGG 2 cut(s) 36, 839
BcoDI GTCTC 2 cut(s) 116, 1442
BfaI CTAG 3 cut(s) 41, 203, 1443
BfmI CTRYAG 3 cut(s) 139, 465, 745
BfoI RGCGCY 1 cut(s) 189
BfuAI ACCTGC 1 cut(s) 1176
BisI GCNGC 4 cut(s) 103, 745, 785, 1378
BlsI GCNGC 4 cut(s) 104, 746, 786, 1379
Bme1390I CCNGG 2 cut(s) 36, 839
BmeT110I CYCGRG 2 cut(s) 485, 1027
BmiI GGNNCC 5 cut(s) 187, 523, 995, 1188, 1336
BmrFI CCNGG 2 cut(s) 36, 839
BmrI ACTGGG 1 cut(s) 834
BmsI GCATC 3 cut(s) 796, 1084, 1408
BmuI ACTGGG 1 cut(s) 834
BpmI CTGGAG 1 cut(s) 1377
BpuEI CTTGAG 1 cut(s) 1313
BsaHI GRCGYC 1 cut(s) 186
BsaI GGTCTC 2 cut(s) 116, 1442
BsaJI CCNNGG 7 cut(s) 35, 162, 216, 312, 411, 814, 898
BsaWI WCCGGW 1 cut(s) 396
BsaXI ACNNNNNCTCC 4 cut(s) 603, 633, 853, 883
Bsc4I CCNNNNNNNGG 1 cut(s) 41
Bse1I ACTGG 2 cut(s) 829, 1190
BseAI TCCGGA 1 cut(s) 396
BseBI CCWGG 2 cut(s) 36, 839
BseDI CCNNGG 7 cut(s) 35, 162, 216, 312, 411, 814, 898
BseGI GGATG 3 cut(s) 172, 1019, 1423
BseLI CCNNNNNNNGG 1 cut(s) 41
BseMII CTCAG 3 cut(s) 127, 288, 1368
BseNI ACTGG 2 cut(s) 829, 1190
BseXI GCAGC 4 cut(s) 114, 731, 796, 1364
BseYI CCCAGC 1 cut(s) 1106
BsgI GTGCAG 1 cut(s) 1363
BshFI GGCC 3 cut(s) 297, 369, 483
BshNI GGYRCC 2 cut(s) 185, 993
BsiHKAI GWGCWC 1 cut(s) 927
BsiHKCI CYCGRG 2 cut(s) 485, 1027
BsiSI CCGG 1 cut(s) 397
BslI CCNNNNNNNGG 1 cut(s) 41
BsmAI GTCTC 2 cut(s) 116, 1442
BsnI GGCC 3 cut(s) 297, 369, 483
Bso31I GGTCTC 2 cut(s) 116, 1442
BsoBI CYCGRG 2 cut(s) 485, 1027
Bsp1286I GDGCHC 1 cut(s) 927
Bsp13I TCCGGA 1 cut(s) 396
Bsp1407I TGTACA 2 cut(s) 66, 234
Bsp143I GATC 4 cut(s) 87, 448, 944, 1289
Bsp19I CCATGG 2 cut(s) 162, 312
BspANI GGCC 3 cut(s) 297, 369, 483
BspCNI CTCAG 3 cut(s) 126, 287, 1367
BspEI TCCGGA 1 cut(s) 396
BspLI GGNNCC 5 cut(s) 187, 523, 995, 1188, 1336
BspMAI CTGCAG 1 cut(s) 749
BspMI ACCTGC 1 cut(s) 1176
BspPI GGATC 4 cut(s) 95, 456, 952, 1297
BspT107I GGYRCC 2 cut(s) 185, 993
BspTNI GGTCTC 2 cut(s) 116, 1442
BsrGI TGTACA 2 cut(s) 66, 234
BsrI ACTGG 2 cut(s) 829, 1190
BssECI CCNNGG 7 cut(s) 35, 162, 216, 312, 411, 814, 898
BssMI GATC 4 cut(s) 87, 448, 944, 1289
BssNI GRCGYC 1 cut(s) 186
BssT1I CCWWGG 4 cut(s) 162, 216, 312, 898
Bst2UI CCWGG 2 cut(s) 36, 839
Bst4CI ACNGT 7 cut(s) 28, 110, 143, 173, 701, 1202, 1384
Bst6I CTCTTC 2 cut(s) 385, 947
BstACI GRCGYC 1 cut(s) 186
BstAUI TGTACA 2 cut(s) 66, 234
BstC8I GCNNGC 2 cut(s) 408, 1269
BstDEI CTNAG 6 cut(s) 113, 274, 586, 729, 1272, 1354
BstDSI CCRYGG 4 cut(s) 162, 312, 411, 814
BstF5I GGATG 3 cut(s) 172, 1019, 1423
BstH2I RGCGCY 1 cut(s) 189
BstHHI GCGC 1 cut(s) 188
BstKTI GATC 4 cut(s) 90, 451, 947, 1292
BstMAI GTCTC 2 cut(s) 116, 1442
BstMBI GATC 4 cut(s) 87, 448, 944, 1289
BstMWI GCNNNNNNNGC 2 cut(s) 102, 1103
BstNI CCWGG 2 cut(s) 36, 839
BstSCI CCNGG 2 cut(s) 34, 837
BstSFI CTRYAG 3 cut(s) 139, 465, 745
BstV1I GCAGC 4 cut(s) 114, 731, 796, 1364
BstX2I RGATCY 1 cut(s) 944
BstXI CCANNNNNNTGG 2 cut(s) 518, 1048
BstYI RGATCY 1 cut(s) 944
BsuRI GGCC 3 cut(s) 297, 369, 483
BtgI CCRYGG 4 cut(s) 162, 312, 411, 814
BtsCI GGATG 3 cut(s) 172, 1019, 1423
BtsI GCAGTG 1 cut(s) 459
BtsIMutI CAGTG 6 cut(s) 178, 459, 697, 1197, 1198, 1380
BveI ACCTGC 1 cut(s) 1176
Cac8I GCNNGC 2 cut(s) 408, 1269
CfoI GCGC 1 cut(s) 188
Csp6I GTAC 2 cut(s) 67, 235
CspCI CAANNNNNGTGG 2 cut(s) 259, 294
CviAII CATG 3 cut(s) 163, 313, 1048
CviQI GTAC 2 cut(s) 67, 235
DdeI CTNAG 6 cut(s) 113, 274, 586, 729, 1272, 1354
DinI GGCGCC 1 cut(s) 187
DpnI GATC 4 cut(s) 89, 450, 946, 1291
DpnII GATC 4 cut(s) 87, 448, 944, 1289
DraI TTTAAA 1 cut(s) 684
EaeI YGGCCR 2 cut(s) 295, 367
Eam1104I CTCTTC 2 cut(s) 385, 947
EarI CTCTTC 2 cut(s) 385, 947
Eco130I CCWWGG 4 cut(s) 162, 216, 312, 898
Eco147I AGGCCT 1 cut(s) 483
Eco31I GGTCTC 2 cut(s) 116, 1442
Eco88I CYCGRG 2 cut(s) 485, 1027
EcoRII CCWGG 2 cut(s) 34, 837
EcoT14I CCWWGG 4 cut(s) 162, 216, 312, 898
EgeI GGCGCC 1 cut(s) 187
EheI GGCGCC 1 cut(s) 187
ErhI CCWWGG 4 cut(s) 162, 216, 312, 898
FaeI CATG 3 cut(s) 166, 316, 1051
FalI AAGNNNNNCTT 6 cut(s) 848, 880, 873, 905, 944, 976
FatI CATG 3 cut(s) 162, 312, 1047
FblI GTMKAC 1 cut(s) 495
Fnu4HI GCNGC 4 cut(s) 103, 745, 785, 1378
FokI GGATG 3 cut(s) 179, 1006, 1430
Fsp4HI GCNGC 4 cut(s) 103, 745, 785, 1378
FspBI CTAG 3 cut(s) 41, 203, 1443
GlaI GCGC 1 cut(s) 187
GluI GCNGC 4 cut(s) 103, 745, 785, 1378
GsaI CCCAGC 1 cut(s) 1110
GsuI CTGGAG 1 cut(s) 1377
HaeII RGCGCY 1 cut(s) 189
HaeIII GGCC 3 cut(s) 297, 369, 483
HapII CCGG 1 cut(s) 397
HhaI GCGC 1 cut(s) 188
Hin1I GRCGYC 1 cut(s) 186
Hin1II CATG 3 cut(s) 166, 316, 1051
Hin6I GCGC 1 cut(s) 186
HinP1I GCGC 1 cut(s) 186
HinfI GANTC 6 cut(s) 197, 247, 400, 441, 1037, 1313
HpaII CCGG 1 cut(s) 397
Hpy166II GTNNAC 3 cut(s) 69, 496, 1426
Hpy188I TCNGA 4 cut(s) 87, 132, 448, 802
Hpy188III TCNNGA 7 cut(s) 17, 194, 397, 542, 644, 1310, 1394
Hpy8I GTNNAC 3 cut(s) 69, 496, 1426
HpyAV CCTTC 5 cut(s) 14, 566, 584, 641, 875
HpyCH4III ACNGT 7 cut(s) 28, 110, 143, 173, 701, 1202, 1384
HpyCH4V TGCA 7 cut(s) 677, 747, 914, 965, 1171, 1247, 1380
HpyF10VI GCNNNNNNNGC 2 cut(s) 102, 1103
HpyF3I CTNAG 6 cut(s) 113, 274, 586, 729, 1272, 1354
Hsp92I GRCGYC 1 cut(s) 186
Hsp92II CATG 3 cut(s) 166, 316, 1051
HspAI GCGC 1 cut(s) 186
KasI GGCGCC 1 cut(s) 185
Kpn2I TCCGGA 1 cut(s) 396
Kzo9I GATC 4 cut(s) 87, 448, 944, 1289
LmnI GCTCC 3 cut(s) 527, 861, 1103
Lsp1109I GCAGC 4 cut(s) 114, 731, 796, 1364
LweI GCATC 3 cut(s) 796, 1084, 1408
MaeI CTAG 3 cut(s) 41, 203, 1443
MaeIII GTNAC 4 cut(s) 157, 260, 971, 1384
MalI GATC 4 cut(s) 89, 450, 946, 1291
MboI GATC 4 cut(s) 87, 448, 944, 1289
MboII GAAGA 5 cut(s) 372, 530, 818, 964, 1103
MfeI CAATTG 1 cut(s) 1140
MflI RGATCY 1 cut(s) 944
MhlI GDGCHC 1 cut(s) 927
MlsI TGGCCA 2 cut(s) 297, 369
MluNI TGGCCA 2 cut(s) 297, 369
Mly113I GGCGCC 1 cut(s) 186
MlyI GAGTC 2 cut(s) 1031, 1307
MmeI TCCRAC 4 cut(s) 159, 259, 832, 1234
Mox20I TGGCCA 2 cut(s) 297, 369
MroI TCCGGA 1 cut(s) 396
MroXI GAANNNNTTC 2 cut(s) 885, 956
MscI TGGCCA 2 cut(s) 297, 369
MseI TTAA 7 cut(s) 81, 506, 579, 683, 891, 989, 1079
Msp20I TGGCCA 2 cut(s) 297, 369
MspI CCGG 1 cut(s) 397
MspR9I CCNGG 2 cut(s) 36, 839
MunI CAATTG 1 cut(s) 1140
MvaI CCWGG 2 cut(s) 36, 839
MwoI GCNNNNNNNGC 2 cut(s) 102, 1103
NarI GGCGCC 1 cut(s) 186
NcoI CCATGG 2 cut(s) 162, 312
NdeII GATC 4 cut(s) 87, 448, 944, 1289
NlaIII CATG 3 cut(s) 166, 316, 1051
NlaIV GGNNCC 5 cut(s) 187, 523, 995, 1188, 1336
PaeR7I CTCGAG 2 cut(s) 485, 1027
PceI AGGCCT 1 cut(s) 483
PdmI GAANNNNTTC 2 cut(s) 885, 956
PfeI GAWTC 4 cut(s) 197, 247, 400, 441
PkrI GCNGC 4 cut(s) 104, 746, 786, 1379
PleI GAGTC 2 cut(s) 1031, 1307
PluTI GGCGCC 1 cut(s) 189
PpsI GAGTC 2 cut(s) 1031, 1307
Psp6I CCWGG 2 cut(s) 34, 837
PspFI CCCAGC 1 cut(s) 1106
PspGI CCWGG 2 cut(s) 34, 837
PspN4I GGNNCC 5 cut(s) 187, 523, 995, 1188, 1336
PspXI VCTCGAGB 2 cut(s) 485, 1027
PstI CTGCAG 1 cut(s) 749
PsuI RGATCY 1 cut(s) 944
RsaI GTAC 2 cut(s) 68, 236
RsaNI GTAC 2 cut(s) 67, 235
SaqAI TTAA 7 cut(s) 81, 506, 579, 683, 891, 989, 1079
SatI GCNGC 4 cut(s) 103, 745, 785, 1378
Sau3AI GATC 4 cut(s) 87, 448, 944, 1289
SchI GAGTC 2 cut(s) 1031, 1307
ScrFI CCNGG 2 cut(s) 36, 839
SduI GDGCHC 1 cut(s) 927
SfaNI GCATC 3 cut(s) 796, 1084, 1408
SfcI CTRYAG 3 cut(s) 139, 465, 745
SfoI GGCGCC 1 cut(s) 187
Sfr274I CTCGAG 2 cut(s) 485, 1027
SlaI CTCGAG 2 cut(s) 485, 1027
SmiI ATTTAAAT 1 cut(s) 684
SmlI CTYRAG 3 cut(s) 485, 1027, 1328
SmoI CTYRAG 3 cut(s) 485, 1027, 1328
SseBI AGGCCT 1 cut(s) 483
SspDI GGCGCC 1 cut(s) 185
SspMI CTAG 3 cut(s) 41, 203, 1443
StuI AGGCCT 1 cut(s) 483
StyD4I CCNGG 2 cut(s) 34, 837
StyI CCWWGG 4 cut(s) 162, 216, 312, 898
SwaI ATTTAAAT 1 cut(s) 684
TaaI ACNGT 7 cut(s) 28, 110, 143, 173, 701, 1202, 1384
TaqI TCGA 5 cut(s) 250, 486, 1028, 1362, 1368
TatI WGTACW 2 cut(s) 66, 234
TfiI GAWTC 4 cut(s) 197, 247, 400, 441
Tru1I TTAA 7 cut(s) 81, 506, 579, 683, 891, 989, 1079
Tru9I TTAA 7 cut(s) 81, 506, 579, 683, 891, 989, 1079
TscAI CASTG 6 cut(s) 178, 466, 704, 1197, 1205, 1387
TseI GCWGC 4 cut(s) 102, 744, 784, 1377
TspDTI ATGAA 5 cut(s) 300, 415, 819, 894, 1362
TspGWI ACGGA 3 cut(s) 428, 803, 997
TspRI CASTG 6 cut(s) 178, 466, 704, 1197, 1205, 1387
XhoI CTCGAG 2 cut(s) 485, 1027
XmiI GTMKAC 1 cut(s) 495
XmnI GAANNNNTTC 2 cut(s) 885, 956
XspI CTAG 3 cut(s) 41, 203, 1443
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.