Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0016940

Physical Location & Seq

Genomic Coordinates Forward (+)

73634472 .. 73642350

Gene Structure 7879 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG464200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGGATTCCCACTTCCATACTCTACTGCCTCCTCAGTTTTCCATGTTAGCTCTTCTTCTATGCATATCATTTCTGAGCGCAGAGTCTGCTATAATTCCAAGCATTACCACCGACAAGGAGGCCTTGATCTCATTCAAGGAGGCCTTGCTCGATGTCCCTCCATCTTTAACCTGGGACCAGAATTCATCCCCTTGCAGGAATTGGACCGGAGTTGTTTGCAGAAAACATGGTCAGAGTTGGAGAGTTGTTGGTCTTGATCTTTCTGGCTTGGGACTTACAGTGAATCAACTTAATTCATATGCTCTGACCTTGAACTTCACGCCAATCGCACCAACAATCGGAATCGTCGTAGGAGACTCGCCGTTGAATCTACCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0002764 GO:0003674 GO:0003824 GO:0004672 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008219 GO:0009595 GO:0009605 GO:0009607 GO:0009617 GO:0009626 GO:0009987 GO:0010204 GO:0010359 GO:0012501 GO:0012505 GO:0016020 GO:0016045 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0022898 GO:0023052 GO:0031347 GO:0031349 GO:0032409 GO:0032412 GO:0032879 GO:0033554 GO:0034050 GO:0034762 GO:0034765 GO:0036211 GO:0038023 GO:0043170 GO:0043207 GO:0043269 GO:0043412 GO:0044070 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051606 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0065009 GO:0071704 GO:0071944 GO:0080134 GO:0098543 GO:0098581 GO:0140096 GO:1901564 GO:1903959

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

125

Amino Acids

13.55

Weight (kDa)

5.37

Isoelectric Point (pI)

29.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	37 - 73	2.1e-09	Leucine rich repeat N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0016940)

Species	Orthologous Gene IDs
malus_domestica	MD08G1090800.v1.1
rosa_chinensis	RchiOBHm_Chr5g0066051
rosa_laevigata	RLG00000035837
rosa_multiflora	Rmu_co7961486.1_g000001 Rmu_co8477513.1_g000001
rosa_roxburghii	Rroxscaffold_2G00116380 Rroxscaffold_4G00314260
rosa_rugosa	Rorug01G0232000 Rorug05G0376100
rosa_samantha	Rh5BG450500 Rh5BG450600 Rh5BG450800 Rh5CG473100 Rh5DG464200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	181
AfiI	CCNNNNNNNGG	2 cut(s)	195, 338
AgsI	TTSAA	3 cut(s)	136, 313, 367
AjnI	CCWGG	1 cut(s)	170
AluBI	AGCT	1 cut(s)	50
AluI	AGCT	1 cut(s)	50
Alw26I	GTCTC	1 cut(s)	348
AlwNI	CAGNNNCTG	1 cut(s)	86
AoxI	GGCC	2 cut(s)	120, 141
ApoI	RAATTY	1 cut(s)	181
AspLEI	GCGC	1 cut(s)	80
AspS9I	GGNCC	2 cut(s)	175, 204
AvaII	GGWCC	2 cut(s)	175, 204
BccI	CCATC	1 cut(s)	169
BceAI	ACGGC	1 cut(s)	346
BciT130I	CCWGG	1 cut(s)	172
BcoDI	GTCTC	1 cut(s)	348
Bme1390I	CCNGG	1 cut(s)	172
Bme18I	GGWCC	2 cut(s)	175, 204
BmgT120I	GGNCC	2 cut(s)	175, 204
BmiI	GGNNCC	1 cut(s)	176
BmrFI	CCNGG	1 cut(s)	172
BsaJI	CCNNGG	1 cut(s)	171
BsaWI	WCCGGW	1 cut(s)	206
Bsc4I	CCNNNNNNNGG	2 cut(s)	195, 338
BseBI	CCWGG	1 cut(s)	172
BseDI	CCNNGG	1 cut(s)	171
BseGI	GGATG	1 cut(s)	185
BseLI	CCNNNNNNNGG	2 cut(s)	195, 338
BseMII	CTCAG	2 cut(s)	47, 65
BseRI	GAGGAG	1 cut(s)	21
BshFI	GGCC	2 cut(s)	122, 143
BsiSI	CCGG	1 cut(s)	207
BslFI	GGGAC	3 cut(s)	140, 188, 285
BslI	CCNNNNNNNGG	2 cut(s)	195, 338
BsmAI	GTCTC	1 cut(s)	348
BsmFI	GGGAC	3 cut(s)	140, 188, 285
BsnI	GGCC	2 cut(s)	122, 143
Bsp143I	GATC	2 cut(s)	126, 256
BspANI	GGCC	2 cut(s)	122, 143
BspCNI	CTCAG	2 cut(s)	46, 66
BspLI	GGNNCC	1 cut(s)	176
BspQI	GCTCTTC	1 cut(s)	57
BssECI	CCNNGG	1 cut(s)	171
BssMI	GATC	2 cut(s)	126, 256
Bst2UI	CCWGG	1 cut(s)	172
Bst4CI	ACNGT	1 cut(s)	280
Bst6I	CTCTTC	1 cut(s)	57
BstAPI	GCANNNNNTGC	1 cut(s)	86
BstDEI	CTNAG	2 cut(s)	33, 74
BstF5I	GGATG	1 cut(s)	185
BstHHI	GCGC	1 cut(s)	80
BstKTI	GATC	2 cut(s)	129, 259
BstMAI	GTCTC	1 cut(s)	348
BstMBI	GATC	2 cut(s)	126, 256
BstMWI	GCNNNNNNNGC	1 cut(s)	86
BstNI	CCWGG	1 cut(s)	172
BstSCI	CCNGG	1 cut(s)	170
BsuRI	GGCC	2 cut(s)	122, 143
BtsCI	GGATG	1 cut(s)	185
BtsIMutI	CAGTG	1 cut(s)	285
CaiI	CAGNNNCTG	1 cut(s)	86
CfoI	GCGC	1 cut(s)	80
Cfr13I	GGNCC	2 cut(s)	175, 204
CviAII	CATG	2 cut(s)	43, 227
CviJI	RGCY	4 cut(s)	50, 122, 143, 267
CviKI_1	RGCY	4 cut(s)	50, 122, 143, 267
DdeI	CTNAG	2 cut(s)	33, 74
DpnI	GATC	2 cut(s)	128, 258
DpnII	GATC	2 cut(s)	126, 256
Eam1104I	CTCTTC	1 cut(s)	57
EarI	CTCTTC	1 cut(s)	57
Eco147I	AGGCCT	2 cut(s)	122, 143
Eco47I	GGWCC	2 cut(s)	175, 204
EcoRI	GAATTC	1 cut(s)	181
EcoRII	CCWGG	1 cut(s)	170
EcoT22I	ATGCAT	1 cut(s)	65
FaeI	CATG	2 cut(s)	46, 230
FaiI	YATR	8 cut(s)	18, 44, 61, 65, 92, 228, 298, 300
FalI	AAGNNNNNCTT	4 cut(s)	107, 139, 128, 160
FaqI	GGGAC	3 cut(s)	140, 188, 285
FatI	CATG	2 cut(s)	42, 226
FauNDI	CATATG	1 cut(s)	298
FokI	GGATG	1 cut(s)	172
GlaI	GCGC	1 cut(s)	79
HaeIII	GGCC	2 cut(s)	122, 143
HapII	CCGG	1 cut(s)	207
HhaI	GCGC	1 cut(s)	80
Hin1II	CATG	2 cut(s)	46, 230
Hin6I	GCGC	1 cut(s)	78
HinP1I	GCGC	1 cut(s)	78
HinfI	GANTC	6 cut(s)	5, 83, 283, 342, 356, 367
HpaII	CCGG	1 cut(s)	207
Hpy188I	TCNGA	4 cut(s)	75, 234, 306, 341
Hpy188III	TCNNGA	1 cut(s)	254
Hpy99I	CGWCG	1 cut(s)	350
HpyCH4III	ACNGT	1 cut(s)	280
HpyCH4V	TGCA	3 cut(s)	63, 195, 219
HpyF10VI	GCNNNNNNNGC	1 cut(s)	86
HpyF3I	CTNAG	2 cut(s)	33, 74
Hsp92II	CATG	2 cut(s)	46, 230
HspAI	GCGC	1 cut(s)	78
Kzo9I	GATC	2 cut(s)	126, 256
LguI	GCTCTTC	1 cut(s)	57
LpnPI	CCDG	6 cut(s)	157, 181, 184, 191, 220, 249
MalI	GATC	2 cut(s)	128, 258
MboI	GATC	2 cut(s)	126, 256
MboII	GAAGA	2 cut(s)	44, 47
MluCI	AATT	4 cut(s)	93, 181, 199, 292
MlyI	GAGTC	2 cut(s)	92, 350
MmeI	TCCRAC	1 cut(s)	218
MnlI	CCTC	5 cut(s)	39, 42, 112, 133, 168
Mph1103I	ATGCAT	1 cut(s)	65
MseI	TTAA	3 cut(s)	167, 291, 376
MspI	CCGG	1 cut(s)	207
MspR9I	CCNGG	1 cut(s)	172
MvaI	CCWGG	1 cut(s)	172
MwoI	GCNNNNNNNGC	1 cut(s)	86
NdeI	CATATG	1 cut(s)	298
NdeII	GATC	2 cut(s)	126, 256
NlaIII	CATG	2 cut(s)	46, 230
NlaIV	GGNNCC	1 cut(s)	176
NsiI	ATGCAT	1 cut(s)	65
PceI	AGGCCT	2 cut(s)	122, 143
PciSI	GCTCTTC	1 cut(s)	57
PcsI	WCGNNNNNNNCGW	1 cut(s)	345
PfeI	GAWTC	4 cut(s)	5, 283, 342, 367
PleI	GAGTC	2 cut(s)	91, 350
PpsI	GAGTC	2 cut(s)	91, 350
Psp6I	CCWGG	1 cut(s)	170
PspGI	CCWGG	1 cut(s)	170
PspN4I	GGNNCC	1 cut(s)	176
PspPI	GGNCC	2 cut(s)	175, 204
PstNI	CAGNNNCTG	1 cut(s)	86
SapI	GCTCTTC	1 cut(s)	57
SaqAI	TTAA	3 cut(s)	167, 291, 376
Sau3AI	GATC	2 cut(s)	126, 256
Sau96I	GGNCC	2 cut(s)	175, 204
SchI	GAGTC	2 cut(s)	92, 350
ScrFI	CCNGG	1 cut(s)	172
SetI	ASST	4 cut(s)	52, 173, 311, 376
SinI	GGWCC	2 cut(s)	175, 204
Sse9I	AATT	4 cut(s)	93, 181, 199, 292
SseBI	AGGCCT	2 cut(s)	122, 143
StuI	AGGCCT	2 cut(s)	122, 143
StyD4I	CCNGG	1 cut(s)	170
TaaI	ACNGT	1 cut(s)	280
TaqI	TCGA	1 cut(s)	150
TasI	AATT	4 cut(s)	93, 181, 199, 292
TfiI	GAWTC	4 cut(s)	5, 283, 342, 367
Tru1I	TTAA	3 cut(s)	167, 291, 376
Tru9I	TTAA	3 cut(s)	167, 291, 376
TscAI	CASTG	1 cut(s)	285
TspDTI	ATGAA	2 cut(s)	174, 285
TspRI	CASTG	1 cut(s)	285
VpaK11BI	GGWCC	2 cut(s)	175, 204
XapI	RAATTY	1 cut(s)	181
XcmI	CCANNNNNNNNNTGG	1 cut(s)	168
Zsp2I	ATGCAT	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.