Rorug01G0232000
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Reverse (-)
33360627 .. 33367022
6396 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0232000.1

Sequence Viewer

Length: 1230 bp
ATGATGCAGAGGCTCAAGGCAGCTGTATTGGCCAGACGCGGCAGCCTTGGCAGTTGTCGTTTCCTCCCCCATTGCAGCAGAAGAGGCCTCTGCTCTCTCCCGGACACTGCCCTCAACGATGATCTTGATAACCAAGTATTGGTTGAAGGCAAAGCTTGGTCCAGAACTGCAGTTCTCAACAGGCCTTCAGTGCTCAATGCTCTCAATTCTGCAATGGGGCTTAGATTGCAGAAACTGTACAGAAGTTGGGAAGATAATCCGGATGTGGGCTTTATTGCATTGAAGGGCAGTGGCAAGGCATTTTGTGCGGGTGGAGATGTAGTGTCTCTCTATCATTTGATAAACGAAGGGAGAATGGAAGATTGTAAGGAGTTTTTTAGGGCATTATATCCTTTTACGTATCTCCTGGGCACATGTTTAAAGCCACATGTGGCTATCTTGAATGGAGTTACCATGGGTGGCGGTGGTGGTGTCTCAATCCCTGGAACATTCCGCATTGCAACTGATAAAACCGTTTTCGCTACCCCTGAAACTCTAATTGGTTTCCATCCAGATGCTGGGGCATCCTTTTACCTTTCACATCTACCGGGTCACTTAGGGGAGTTCTTGGCTCTTACAAGTGAAAAACTCAATGGACCTGAGATGCTTGCTTGTGGGCTTGCTACACACTATTTGCATAGTTCAAGGATTCCATTAATCGAAGAAGAACTTGGGAAGTTAGTCACTGATGATCCTTCTGTCATTGAAACTTGTTTAGACAAACATGGGGAACCTGTCCATCCAGATAAGTCAAGTGTGCTTCACAGGATTGAATTACTTGATGAATGTTTCAGCCATGACACGGTTGAAGAGATTATAGATGCCTTGGAAATTGAGGCAGGCAGAACAAAGGATCCATGGTGCATTTCTACTCTAAAGAGACTTAAAGAAGTCTCGCCATTGAGCTTGAAGGTTTCCCTTAGATCTATAAGAGAAGGAAGATTTCAGACCCTTGATCAGTGCTTGGTCCGTGAGTATCGAATGTCCTTACAGGGAATTTCTAAGCAGATTACCGGTGACTTCTGTGAGGGAGTTCGGGCACGACTAGTCGAAAAGGACTCAGCCCCAAAGTGGGATCCTCCAAGTGTTGAAAAAGTAACCAAAGACATGGTGGATCAATATTTTGTCCCTCTTAGTGAGTTTGAGCCTGACTTAGAACTACCAACAGAGTCGCGAGAAGCATTCATCTGA

Protein Analysis

409

Amino Acids

45.3

Weight (kDa)

5.7

Isoelectric Point (pI)

39.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ECH_2 PF16113 55 - 388 1.4e-118 Enoyl-CoA hydratase/isomerase
ECH_1 PF00378 59 - 223 9.1e-22 Enoyl-CoA hydratase/isomerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 139, 557
AccII CGCG 2 cut(s) 39, 1213
AccIII TCCGGA 1 cut(s) 259
AciI CCGC 4 cut(s) 39, 308, 462, 493
AclWI GGATC 6 cut(s) 725, 887, 900, 1109, 1122, 1161
AcoI YGGCCR 1 cut(s) 30
AcsI RAATTY 1 cut(s) 1035
AcuI CTGAAG 1 cut(s) 171
AfaI GTAC 1 cut(s) 239
AfiI CCNNNNNNNGG 6 cut(s) 139, 266, 557, 841, 1110, 1111
AflIII ACRYGT 2 cut(s) 413, 427
AgeI ACCGGT 1 cut(s) 1052
AgsI TTSAA 9 cut(s) 146, 283, 442, 684, 746, 812, 848, 949, 1130
AhlI ACTAGT 1 cut(s) 1084
AjnI CCWGG 2 cut(s) 405, 481
AjuI GAANNNNNNNTTGG 4 cut(s) 522, 554, 693, 725
AloI GAACNNNNNNTCC 2 cut(s) 877, 909
AluBI AGCT 3 cut(s) 23, 155, 945
AluI AGCT 3 cut(s) 23, 155, 945
Alw21I GWGCWC 1 cut(s) 195
Alw26I GTCTC 4 cut(s) 330, 478, 913, 937
AlwI GGATC 6 cut(s) 725, 887, 900, 1109, 1122, 1161
AlwNI CAGNNNCTG 2 cut(s) 235, 557
Aor13HI TCCGGA 1 cut(s) 259
AoxI GGCC 3 cut(s) 30, 85, 182
ApeKI GCWGC 3 cut(s) 20, 42, 75
ApoI RAATTY 1 cut(s) 1035
AseI ATTAAT 1 cut(s) 695
AsiGI ACCGGT 1 cut(s) 1052
AspS9I GGNCC 3 cut(s) 159, 635, 1006
AsuC2I CCSGG 2 cut(s) 101, 588
AsuHPI GGTGA 1 cut(s) 1067
AvaII GGWCC 3 cut(s) 159, 635, 1006
BaeGI GKGCMC 2 cut(s) 413, 1081
BalI TGGCCA 1 cut(s) 32
BamHI GGATCC 2 cut(s) 892, 1114
Bbv12I GWGCWC 1 cut(s) 195
BbvI GCAGC 3 cut(s) 32, 54, 87
BccI CCATC 2 cut(s) 555, 786
BciT130I CCWGG 2 cut(s) 407, 483
BclI TGATCA 1 cut(s) 994
BcnI CCSGG 2 cut(s) 101, 588
BcoDI GTCTC 4 cut(s) 330, 478, 913, 937
BcuI ACTAGT 1 cut(s) 1084
BfaI CTAG 1 cut(s) 1085
BfmI CTRYAG 1 cut(s) 168
BglII AGATCT 1 cut(s) 962
BisI GCNGC 4 cut(s) 21, 40, 43, 76
BlsI GCNGC 4 cut(s) 22, 41, 44, 77
Bme1390I CCNGG 4 cut(s) 101, 407, 483, 588
Bme18I GGWCC 3 cut(s) 159, 635, 1006
BmgT120I GGNCC 3 cut(s) 159, 635, 1006
BmiI GGNNCC 3 cut(s) 771, 894, 1116
BmrFI CCNGG 4 cut(s) 101, 407, 483, 588
BmsI GCATC 4 cut(s) 544, 572, 633, 850
BpuMI CCSGG 2 cut(s) 101, 588
BsaAI YACGTR 1 cut(s) 399
BsaJI CCNNGG 6 cut(s) 46, 406, 453, 481, 864, 896
BsaWI WCCGGW 2 cut(s) 259, 1052
BsaXI ACNNNNNCTCC 2 cut(s) 306, 336
Bsc4I CCNNNNNNNGG 6 cut(s) 139, 266, 557, 841, 1110, 1111
Bse118I RCCGGY 1 cut(s) 1052
Bse3DI GCAATG 3 cut(s) 70, 219, 495
BseAI TCCGGA 1 cut(s) 259
BseBI CCWGG 2 cut(s) 407, 483
BseDI CCNNGG 6 cut(s) 46, 406, 453, 481, 864, 896
BseGI GGATG 4 cut(s) 268, 547, 563, 778
BseLI CCNNNNNNNGG 6 cut(s) 139, 266, 557, 841, 1110, 1111
BseMI GCAATG 3 cut(s) 70, 219, 495
BseMII CTCAG 2 cut(s) 630, 1113
BseSI GKGCMC 2 cut(s) 413, 1081
BseXI GCAGC 3 cut(s) 32, 54, 87
BseYI CCCAGC 1 cut(s) 557
Bsh1236I CGCG 2 cut(s) 39, 1213
BshFI GGCC 3 cut(s) 32, 87, 184
BshTI ACCGGT 1 cut(s) 1052
BsiHKAI GWGCWC 1 cut(s) 195
BsiSI CCGG 4 cut(s) 101, 260, 587, 1053
BslFI GGGAC 1 cut(s) 1151
BslI CCNNNNNNNGG 6 cut(s) 139, 266, 557, 841, 1110, 1111
BsmAI GTCTC 4 cut(s) 330, 478, 913, 937
BsmFI GGGAC 1 cut(s) 1151
BsmI GAATGC 1 cut(s) 1220
BsnI GGCC 3 cut(s) 32, 87, 184
Bsp1286I GDGCHC 3 cut(s) 195, 413, 1081
Bsp13I TCCGGA 1 cut(s) 259
Bsp1407I TGTACA 1 cut(s) 237
Bsp143I GATC 7 cut(s) 121, 730, 892, 962, 994, 1114, 1153
Bsp19I CCATGG 2 cut(s) 453, 896
Bsp68I TCGCGA 1 cut(s) 1213
BspACI CCGC 4 cut(s) 39, 308, 462, 493
BspANI GGCC 3 cut(s) 32, 87, 184
BspCNI CTCAG 2 cut(s) 631, 1112
BspEI TCCGGA 1 cut(s) 259
BspFNI CGCG 2 cut(s) 39, 1213
BspLI GGNNCC 3 cut(s) 771, 894, 1116
BspMAI CTGCAG 1 cut(s) 172
BspPI GGATC 6 cut(s) 725, 887, 900, 1109, 1122, 1161
BsrDI GCAATG 3 cut(s) 70, 219, 495
BsrFI RCCGGY 1 cut(s) 1052
BsrGI TGTACA 1 cut(s) 237
BssAI RCCGGY 1 cut(s) 1052
BssECI CCNNGG 6 cut(s) 46, 406, 453, 481, 864, 896
BssMI GATC 7 cut(s) 121, 730, 892, 962, 994, 1114, 1153
BssT1I CCWWGG 4 cut(s) 46, 453, 864, 896
Bst2UI CCWGG 2 cut(s) 407, 483
Bst4CI ACNGT 3 cut(s) 237, 514, 844
Bst6I CTCTTC 2 cut(s) 76, 843
BstAPI GCANNNNNTGC 1 cut(s) 305
BstAUI TGTACA 1 cut(s) 237
BstBAI YACGTR 1 cut(s) 399
BstC8I GCNNGC 3 cut(s) 648, 660, 880
BstDEI CTNAG 8 cut(s) 221, 595, 639, 959, 1041, 1099, 1172, 1192
BstDSI CCRYGG 2 cut(s) 453, 896
BstF5I GGATG 4 cut(s) 268, 547, 563, 778
BstFNI CGCG 2 cut(s) 39, 1213
BstKTI GATC 7 cut(s) 124, 733, 895, 965, 997, 1117, 1156
BstMAI GTCTC 4 cut(s) 330, 478, 913, 937
BstMBI GATC 7 cut(s) 121, 730, 892, 962, 994, 1114, 1153
BstMWI GCNNNNNNNGC 6 cut(s) 29, 48, 84, 190, 226, 305
BstNI CCWGG 2 cut(s) 407, 483
BstNSI RCATGY 2 cut(s) 417, 431
BstSCI CCNGG 4 cut(s) 99, 405, 481, 586
BstSFI CTRYAG 1 cut(s) 168
BstSLI GKGCMC 2 cut(s) 413, 1081
BstSNI TACGTA 1 cut(s) 399
BstUI CGCG 2 cut(s) 39, 1213
BstV1I GCAGC 3 cut(s) 32, 54, 87
BstX2I RGATCY 3 cut(s) 892, 962, 1114
BstXI CCANNNNNNTGG 1 cut(s) 1147
BstYI RGATCY 3 cut(s) 892, 962, 1114
BsuRI GGCC 3 cut(s) 32, 87, 184
BtgI CCRYGG 2 cut(s) 453, 896
BtsCI GGATG 4 cut(s) 268, 547, 563, 778
BtsI GCAGTG 2 cut(s) 105, 295
BtsIMutI CAGTG 5 cut(s) 105, 195, 295, 723, 1004
BtuMI TCGCGA 1 cut(s) 1213
Cac8I GCNNGC 3 cut(s) 648, 660, 880
CaiI CAGNNNCTG 2 cut(s) 235, 557
Cfr10I RCCGGY 1 cut(s) 1052
Cfr13I GGNCC 3 cut(s) 159, 635, 1006
CseI GACGC 1 cut(s) 45
Csp6I GTAC 1 cut(s) 238
CspAI ACCGGT 1 cut(s) 1052
CviAII CATG 7 cut(s) 414, 428, 454, 764, 836, 897, 1147
CviQI GTAC 1 cut(s) 238
DdeI CTNAG 8 cut(s) 221, 595, 639, 959, 1041, 1099, 1172, 1192
DpnI GATC 7 cut(s) 123, 732, 894, 964, 996, 1116, 1155
DpnII GATC 7 cut(s) 121, 730, 892, 962, 994, 1114, 1153
DraI TTTAAA 1 cut(s) 420
EaeI YGGCCR 1 cut(s) 30
Eam1104I CTCTTC 2 cut(s) 76, 843
EarI CTCTTC 2 cut(s) 76, 843
Eco105I TACGTA 1 cut(s) 399
Eco130I CCWWGG 4 cut(s) 46, 453, 864, 896
Eco147I AGGCCT 2 cut(s) 87, 184
Eco47I GGWCC 3 cut(s) 159, 635, 1006
Eco57I CTGAAG 1 cut(s) 171
EcoRII CCWGG 2 cut(s) 405, 481
EcoT14I CCWWGG 4 cut(s) 46, 453, 864, 896
ErhI CCWWGG 4 cut(s) 46, 453, 864, 896
FaeI CATG 7 cut(s) 417, 431, 457, 767, 839, 900, 1150
FalI AAGNNNNNCTT 2 cut(s) 693, 725
FaqI GGGAC 1 cut(s) 1151
FatI CATG 7 cut(s) 413, 427, 453, 763, 835, 896, 1146
FauI CCCGC 1 cut(s) 301
FbaI TGATCA 1 cut(s) 994
Fnu4HI GCNGC 4 cut(s) 21, 40, 43, 76
FokI GGATG 4 cut(s) 275, 534, 550, 765
Fsp4HI GCNGC 4 cut(s) 21, 40, 43, 76
FspBI CTAG 1 cut(s) 1085
GluI GCNGC 4 cut(s) 21, 40, 43, 76
GsaI CCCAGC 1 cut(s) 561
HaeIII GGCC 3 cut(s) 32, 87, 184
HapII CCGG 4 cut(s) 101, 260, 587, 1053
HgaI GACGC 1 cut(s) 45
Hin1II CATG 7 cut(s) 417, 431, 457, 767, 839, 900, 1150
HindIII AAGCTT 1 cut(s) 153
HinfI GANTC 3 cut(s) 688, 1097, 1208
HpaII CCGG 4 cut(s) 101, 260, 587, 1053
HphI GGTGA 1 cut(s) 1067
Hpy188I TCNGA 2 cut(s) 987, 1229
Hpy188III TCNNGA 7 cut(s) 125, 162, 260, 439, 551, 782, 1212
HpyAV CCTTC 7 cut(s) 140, 195, 277, 341, 744, 943, 968
HpyCH4III ACNGT 3 cut(s) 237, 514, 844
HpyCH4IV ACGT 1 cut(s) 398
HpyCH4V TGCA 9 cut(s) 7, 75, 170, 212, 229, 278, 500, 676, 903
HpyF10VI GCNNNNNNNGC 6 cut(s) 29, 48, 84, 190, 226, 305
HpyF3I CTNAG 8 cut(s) 221, 595, 639, 959, 1041, 1099, 1172, 1192
HpySE526I ACGT 1 cut(s) 398
Hsp92II CATG 7 cut(s) 417, 431, 457, 767, 839, 900, 1150
Kpn2I TCCGGA 1 cut(s) 259
Ksp22I TGATCA 1 cut(s) 994
Kzo9I GATC 7 cut(s) 121, 730, 892, 962, 994, 1114, 1153
Lsp1109I GCAGC 3 cut(s) 32, 54, 87
LweI GCATC 4 cut(s) 544, 572, 633, 850
MaeI CTAG 1 cut(s) 1085
MaeII ACGT 1 cut(s) 398
MaeIII GTNAC 5 cut(s) 448, 590, 721, 1055, 1135
MalI GATC 7 cut(s) 123, 732, 894, 964, 996, 1116, 1155
MboI GATC 7 cut(s) 121, 730, 892, 962, 994, 1114, 1153
MboII GAAGA 7 cut(s) 93, 263, 371, 713, 716, 860, 990
MflI RGATCY 3 cut(s) 892, 962, 1114
MhlI GDGCHC 3 cut(s) 195, 413, 1081
MlsI TGGCCA 1 cut(s) 32
MluCI AATT 5 cut(s) 205, 537, 812, 870, 1035
MluNI TGGCCA 1 cut(s) 32
MlyI GAGTC 2 cut(s) 1091, 1217
MnlI CCTC 9 cut(s) 3, 74, 77, 98, 122, 868, 1060, 1128, 1179
Mox20I TGGCCA 1 cut(s) 32
MroI TCCGGA 1 cut(s) 259
MscI TGGCCA 1 cut(s) 32
MseI TTAA 3 cut(s) 419, 695, 924
MslI CAYNNNNRTG 1 cut(s) 552
Msp20I TGGCCA 1 cut(s) 32
MspA1I CMGCKG 1 cut(s) 23
MspI CCGG 4 cut(s) 101, 260, 587, 1053
MspR9I CCNGG 4 cut(s) 101, 407, 483, 588
Mva1269I GAATGC 1 cut(s) 1220
MvaI CCWGG 2 cut(s) 407, 483
MvnI CGCG 2 cut(s) 39, 1213
MwoI GCNNNNNNNGC 6 cut(s) 29, 48, 84, 190, 226, 305
NciI CCSGG 2 cut(s) 101, 588
NcoI CCATGG 2 cut(s) 453, 896
NdeII GATC 7 cut(s) 121, 730, 892, 962, 994, 1114, 1153
NlaIII CATG 7 cut(s) 417, 431, 457, 767, 839, 900, 1150
NlaIV GGNNCC 3 cut(s) 771, 894, 1116
NmuCI GTSAC 3 cut(s) 590, 721, 1055
NruI TCGCGA 1 cut(s) 1213
NspI RCATGY 2 cut(s) 417, 431
PceI AGGCCT 2 cut(s) 87, 184
PciI ACATGT 2 cut(s) 413, 427
PctI GAATGC 1 cut(s) 1220
PfeI GAWTC 1 cut(s) 688
PflMI CCANNNNNTGG 2 cut(s) 139, 557
PfoI TCCNGGA 1 cut(s) 99
PinAI ACCGGT 1 cut(s) 1052
PkrI GCNGC 4 cut(s) 22, 41, 44, 77
PleI GAGTC 2 cut(s) 1091, 1216
PpsI GAGTC 2 cut(s) 1091, 1216
Ppu21I YACGTR 1 cut(s) 399
PscI ACATGT 2 cut(s) 413, 427
PshBI ATTAAT 1 cut(s) 695
Psp6I CCWGG 2 cut(s) 405, 481
PspFI CCCAGC 1 cut(s) 557
PspGI CCWGG 2 cut(s) 405, 481
PspN4I GGNNCC 3 cut(s) 771, 894, 1116
PspPI GGNCC 3 cut(s) 159, 635, 1006
PstI CTGCAG 1 cut(s) 172
PstNI CAGNNNCTG 2 cut(s) 235, 557
PsuI RGATCY 3 cut(s) 892, 962, 1114
PvuII CAGCTG 1 cut(s) 23
RruI TCGCGA 1 cut(s) 1213
RsaI GTAC 1 cut(s) 239
RsaNI GTAC 1 cut(s) 238
RseI CAYNNNNRTG 1 cut(s) 552
SaqAI TTAA 3 cut(s) 419, 695, 924
SatI GCNGC 4 cut(s) 21, 40, 43, 76
Sau3AI GATC 7 cut(s) 121, 730, 892, 962, 994, 1114, 1153
Sau96I GGNCC 3 cut(s) 159, 635, 1006
SchI GAGTC 2 cut(s) 1091, 1217
ScrFI CCNGG 4 cut(s) 101, 407, 483, 588
SduI GDGCHC 3 cut(s) 195, 413, 1081
SetI ASST 8 cut(s) 25, 157, 401, 576, 640, 775, 947, 954
SfaNI GCATC 4 cut(s) 544, 572, 633, 850
SfcI CTRYAG 1 cut(s) 168
SinI GGWCC 3 cut(s) 159, 635, 1006
SmiMI CAYNNNNRTG 1 cut(s) 552
SmlI CTYRAG 1 cut(s) 14
SmoI CTYRAG 1 cut(s) 14
SnaBI TACGTA 1 cut(s) 399
SpeI ACTAGT 1 cut(s) 1084
Sse9I AATT 5 cut(s) 205, 537, 812, 870, 1035
SseBI AGGCCT 2 cut(s) 87, 184
SsiI CCGC 4 cut(s) 39, 308, 462, 493
SspI AATATT 1 cut(s) 1160
SspMI CTAG 1 cut(s) 1085
StuI AGGCCT 2 cut(s) 87, 184
StyD4I CCNGG 4 cut(s) 99, 405, 481, 586
StyI CCWWGG 4 cut(s) 46, 453, 864, 896
TaaI ACNGT 3 cut(s) 237, 514, 844
TaiI ACGT 1 cut(s) 401
TaqI TCGA 3 cut(s) 699, 1018, 1089
TasI AATT 5 cut(s) 205, 537, 812, 870, 1035
TatI WGTACW 1 cut(s) 237
TauI GCSGC 1 cut(s) 42
TfiI GAWTC 1 cut(s) 688
Tru1I TTAA 3 cut(s) 419, 695, 924
Tru9I TTAA 3 cut(s) 419, 695, 924
TscAI CASTG 5 cut(s) 112, 195, 295, 730, 1004
TseFI GTSAC 3 cut(s) 590, 721, 1055
TseI GCWGC 3 cut(s) 20, 42, 75
Tsp45I GTSAC 3 cut(s) 590, 721, 1055
TspDTI ATGAA 2 cut(s) 837, 1213
TspGWI ACGGA 1 cut(s) 998
TspRI CASTG 5 cut(s) 112, 195, 295, 730, 1004
Van91I CCANNNNNTGG 2 cut(s) 139, 557
VpaK11BI GGWCC 3 cut(s) 159, 635, 1006
VspI ATTAAT 1 cut(s) 695
XapI RAATTY 1 cut(s) 1035
XceI RCATGY 2 cut(s) 417, 431
XcmI CCANNNNNNNNNTGG 2 cut(s) 554, 1147
XspI CTAG 1 cut(s) 1085
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.