Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0008819

Physical Location & Seq

Genomic Coordinates Reverse (-)

31132502 .. 31141393

Gene Structure 8892 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1247700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2034 bp

ATGGCATTCTCAGCTTCCAATCATCCCCAAGGCAGTTCCAGAACAGGGACACCTGGTGATGCTTTGTATAAGGAACTATGGCATGCTTGTGCTGGTCCCCTTGTCACCCTTCCACGTGAAGGGGAGCGAGTTTATTACTTTCCACAGGGTCATATGGAACAGCTTGAAGCATCAATGCATCAAGGGTCGGAGCAGCAAATGCCTTCATTCAATCTTCCATCCAAAATTCTATGTAAAGTTGTTAATGTTCAGCTTCGGGCTGAACCTGAAACAGATGAGGTTTATGCACAAGTTACCCTCCTACCAGAAGCAGATCAAAGTGAGGTAACAAGCCCAGATCCTCCACTCCCAGAAACTCCACAGTGTACGGTACATTCATTCTGCAAGACACTTACTGCTTCTGACACCAGCACACATGGTGGATTCTCCGTCCTTCGTAGGCATGCTGATGATTGTCTGCCACCACTGGATATGACCCAGCAACCTCCATGGCAAGAATTGGTTGCATCTGATTTGCATGGAAATGAATGGCATTTTCGGCACATATTTCGAGGGCAACCAAGGCGCCACTTGCTCACAACTGGATGGAGTGTTTTTGTGAGTTCTAAGAAATTAGTAGCTGGGGATGCATTTATATTCCTAAGAGGTGAAAATGGAGAGCTGCGTGTTGGAGTAAGGAGACTCATGAGACAACCAAGCAATATGCCATCTTCTGTTATTTCTAGTCACAGCATGCATCTTGGAGTTTTGGCGACTGCATCTCATGCCATTGCAACTGGGACACTATTTTCTGTATTCTACAAGCCAAGAACAAGTCGGTCTGAGTTCCTTGTAAGTGTTAACAAGTACATTGAAGCTCGCAGTCAGAAGCTATCTGTTGGGATGAGGTTTAAGATGAGATTTGAGGGTGAGGAAGTTCCTGAAAGAAGGTTCAGTGGTACAATTGTTGGAGTTGGAGATAATACAGCACCTGGATGGGCGAATTCTGAGTGGAGATCACTAAAGGTCCAATGGGATGAGCCCTCATCAATATTGCGACCAGATCGAGTATCACCATGGGATTTGGAGCCCTTGGTGGCAACTACTCCCCAAAACTCCCAACCTGCACTGAGGAATAAGCGGGCTCGGCCTCCTGTTTTACCTTCACCATCCCCAGACCTTTCTGCACTGGGTGAATGGAAATCCAAAGCTGAGTCTCCTTTGGCTTTCTCCTATAGCGACTCACAGCGTGGTCGAGACATTTATCCATCTCCCAAGTATAATTCTGCTTCAAAACCCAATTCTCTGTGCTTTACTGGGAATAATTCTCTTGCTGCCGTTTCTGGGAACTCAATGTTTTGGCCTAATCGAGTTGATGGTGTAACCGAGCCTTTTTCACCTGTTATGAACAAAGATTGTGGGGAAAGGAGACAAAGCACTGGGAATGGCTGTAGGCTGTTCGGAATTCAGCTACTTGAAAATTCTAATTTAGAAGAGACTTCTCCTGTGGTTACGGTATCTGGAAAGTTGGGGGATACTCTACCAGTTTCATCATTTGATGCGGAATCTGACCAACATTCAGAACCATCAAATCTCAATCGATCTGATCTTCCTTCAGGAAGTTGTGATGCTGAGAAGTCATGTCTGAGATCACCACAGGAATCTCAAAGCAGGCAAATCCGGAGCTGCACAAAGGTTCACATGCAAGGGATTGCTGTTGGAAGGGCTGTAGATTTGACACGGTTTGAGCGGTACGAGGATCTGCTTAAGAAACTAGAAGAGATGTTCGATATTGAAGGTGAACTCTGTGGATCTACAAAGAAATGGCAGGTTGTCTACACCGATGATGAAGATGACATGATGATGGTTGGGGATGATCCATGGCATGAGTTCTGCAGCATGGTAAGGAAGATTTTTATCTACACATTAGAGGAAGTAAAGAGGTTGTCGCCCAAGATAAAACTTCCGCTGAACGAGGTCAAAGCTGGCCAGCTGGATTCTGAAGCAGCAGTCAACACTGAAGACCGATCATCTATAGTTGGACCTGCATACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007568 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009889 GO:0009890 GO:0009892 GO:0010033 GO:0010150 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0042221 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048366 GO:0048367 GO:0048519 GO:0048523 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0090693 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA Auxin_resp B3

Protein Analysis

678

Amino Acids

75.34

Weight (kDa)

5.92

Isoelectric Point (pI)

60.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	127 - 227	2.2e-21	B3 DNA binding domain
BRWD_AD	PF25313	253 - 358	5.6e-08	BRWD/PHIP ancillary domain-like domain
ARF_AD	PF06507	276 - 358	1.7e-32	Auxin response factor ancillary domain
AUX_IAA	PF02309	547 - 644	2.9e-11	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008819)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G59750 AT1G59750 AT1G59750 AT1G59750
fragaria_vesca	FvH4_5g27860 FvH4_5g27860 FvH4_5g27860 FvH4_5g27860 FvH4_5g27860
malus_domestica	MD08G1247700.v1.1
prunus_persica	Prupe.1G585200_v2.0.a1 Prupe.1G585200_v2.0.a1
pyrus_communis	pycom08g21460
rosa_chinensis	RchiOBHm_Chr7g0219771
rosa_laevigata	RLG00000002269
rosa_multiflora	Rmu_sc0005014.1_g000017
rosa_roxburghii	Rroxscaffold_3G00239870
rosa_rugosa	Rorug07G0187800 Rorug07G0187900
rosa_samantha	Rh7AG331600 Rh7BG321200 Rh7CG349000
rosa_wichuraiana	Rw7G027920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	1111, 1798
AccB1I	GGYRCC	1 cut(s)	564
AccBSI	CCGCTC	1 cut(s)	1729
AccI	GTMKAC	1 cut(s)	1815
AccIII	TCCGGA	1 cut(s)	1659
AciI	CCGC	4 cut(s)	1120, 1541, 1729, 1946
AclWI	GGATC	4 cut(s)	332, 1746, 1798, 1850
AcoI	YGGCCR	1 cut(s)	1966
AcsI	RAATTY	4 cut(s)	225, 982, 1443, 1459
AcuI	CTGAAG	3 cut(s)	1578, 2001, 2019
AcvI	CACGTG	1 cut(s)	116
AcyI	GRCGYC	1 cut(s)	565
AdeI	CACNNNGTG	4 cut(s)	56, 419, 1172, 1229
AfaI	GTAC	5 cut(s)	367, 372, 848, 940, 1733
AfiI	CCNNNNNNNGG	3 cut(s)	45, 119, 1323
AflII	CTTAAG	1 cut(s)	1745
AgsI	TTSAA	6 cut(s)	167, 211, 854, 1272, 1457, 1775
AjnI	CCWGG	2 cut(s)	52, 970
Alw26I	GTCTC	6 cut(s)	673, 682, 1200, 1230, 1402, 1469
AlwI	GGATC	4 cut(s)	332, 1746, 1798, 1850
AlwNI	CAGNNNCTG	1 cut(s)	971
Aor13HI	TCCGGA	1 cut(s)	1659
AoxI	GGCC	3 cut(s)	1127, 1340, 1966
ApeKI	GCWGC	6 cut(s)	193, 661, 1313, 1665, 1875, 1985
ApoI	RAATTY	4 cut(s)	225, 982, 1443, 1459
AspLEI	GCGC	1 cut(s)	567
AspS9I	GGNCC	3 cut(s)	95, 1006, 2021
AvaII	GGWCC	3 cut(s)	95, 1006, 2021
BaeI	ACNNNNGTAYC	2 cut(s)	930, 963
BalI	TGGCCA	1 cut(s)	1968
BanI	GGYRCC	1 cut(s)	564
BanII	GRGCYC	3 cut(s)	1023, 1071, 1126
BbrPI	CACGTG	1 cut(s)	116
BbsI	GAAGAC	1 cut(s)	2007
BbvI	GCAGC	6 cut(s)	205, 648, 1300, 1652, 1887, 1997
BccI	CCATC	9 cut(s)	226, 579, 715, 969, 1156, 1255, 1349, 1573, 1837
BceAI	ACGGC	1 cut(s)	1301
BcgI	CGANNNNNNTGC	2 cut(s)	530, 564
BciT130I	CCWGG	2 cut(s)	54, 972
BciVI	GTATCC	1 cut(s)	1507
BcoDI	GTCTC	6 cut(s)	673, 682, 1200, 1230, 1402, 1469
BfaI	CTAG	2 cut(s)	723, 1754
BfmI	CTRYAG	5 cut(s)	1213, 1429, 1707, 1873, 2013
BfoI	RGCGCY	1 cut(s)	568
BfrI	CTTAAG	1 cut(s)	1745
BfuAI	ACCTGC	2 cut(s)	1111, 1798
BfuI	GTATCC	1 cut(s)	1507
BisI	GCNGC	6 cut(s)	194, 662, 1314, 1666, 1876, 1986
BlsI	GCNGC	6 cut(s)	195, 663, 1315, 1667, 1877, 1987
Bme1390I	CCNGG	2 cut(s)	54, 972
Bme18I	GGWCC	3 cut(s)	95, 1006, 2021
BmgT120I	GGNCC	3 cut(s)	95, 1006, 2021
BmiI	GGNNCC	3 cut(s)	97, 566, 1068
BmrFI	CCNGG	2 cut(s)	54, 972
BmrI	ACTGGG	4 cut(s)	786, 1178, 1305, 1428
BmsI	GCATC	9 cut(s)	49, 179, 187, 515, 616, 745, 767, 1528, 1597
BmuI	ACTGGG	4 cut(s)	786, 1178, 1305, 1428
BpiI	GAAGAC	1 cut(s)	2007
Bsa29I	ATCGAT	1 cut(s)	1579
BsaAI	YACGTR	1 cut(s)	116
BsaBI	GATNNNNATC	1 cut(s)	1895
BsaHI	GRCGYC	1 cut(s)	565
BsaJI	CCNNGG	6 cut(s)	28, 488, 560, 1055, 1071, 1859
BsaWI	WCCGGW	1 cut(s)	1659
Bsc4I	CCNNNNNNNGG	3 cut(s)	45, 119, 1323
Bse1I	ACTGG	7 cut(s)	471, 586, 781, 1173, 1300, 1423, 1523
Bse3DI	GCAATG	1 cut(s)	768
Bse8I	GATNNNNATC	1 cut(s)	1895
BseAI	TCCGGA	1 cut(s)	1659
BseBI	CCWGG	2 cut(s)	54, 972
BseCI	ATCGAT	1 cut(s)	1579
BseDI	CCNNGG	6 cut(s)	28, 488, 560, 1055, 1071, 1859
BseGI	GGATG	9 cut(s)	22, 218, 590, 631, 888, 980, 1021, 1148, 1858
BseJI	GATNNNNATC	1 cut(s)	1895
BseLI	CCNNNNNNNGG	3 cut(s)	45, 119, 1323
BseMI	GCAATG	1 cut(s)	768
BseMII	CTCAG	7 cut(s)	24, 813, 978, 1100, 1182, 1602, 1616
BseNI	ACTGG	7 cut(s)	471, 586, 781, 1173, 1300, 1423, 1523
BseXI	GCAGC	6 cut(s)	205, 648, 1300, 1652, 1887, 1997
BseYI	CCCAGC	2 cut(s)	477, 620
BsgI	GTGCAG	3 cut(s)	1089, 1149, 1651
BshFI	GGCC	3 cut(s)	1129, 1342, 1968
BshNI	GGYRCC	1 cut(s)	564
BshVI	ATCGAT	1 cut(s)	1579
BsiSI	CCGG	1 cut(s)	1660
BslFI	GGGAC	3 cut(s)	61, 81, 793
BslI	CCNNNNNNNGG	3 cut(s)	45, 119, 1323
BsmAI	GTCTC	6 cut(s)	673, 682, 1200, 1230, 1402, 1469
BsmFI	GGGAC	3 cut(s)	61, 81, 793
BsmI	GAATGC	1 cut(s)	5
BsnI	GGCC	3 cut(s)	1129, 1342, 1968
Bsp1286I	GDGCHC	3 cut(s)	1023, 1071, 1126
Bsp13I	TCCGGA	1 cut(s)	1659
Bsp19I	CCATGG	3 cut(s)	488, 1055, 1859
BspACI	CCGC	4 cut(s)	1120, 1541, 1729, 1946
BspANI	GGCC	3 cut(s)	1129, 1342, 1968
BspCNI	CTCAG	7 cut(s)	23, 814, 979, 1101, 1183, 1603, 1617
BspDI	ATCGAT	1 cut(s)	1579
BspEI	TCCGGA	1 cut(s)	1659
BspHI	TCATGA	1 cut(s)	684
BspLI	GGNNCC	3 cut(s)	97, 566, 1068
BspMAI	CTGCAG	1 cut(s)	1877
BspMI	ACCTGC	2 cut(s)	1111, 1798
BspPI	GGATC	4 cut(s)	332, 1746, 1798, 1850
BspT107I	GGYRCC	1 cut(s)	564
BspTI	CTTAAG	1 cut(s)	1745
BsrBI	CCGCTC	1 cut(s)	1729
BsrDI	GCAATG	1 cut(s)	768
BsrI	ACTGG	7 cut(s)	471, 586, 781, 1173, 1300, 1423, 1523
BssECI	CCNNGG	6 cut(s)	28, 488, 560, 1055, 1071, 1859
BssNI	GRCGYC	1 cut(s)	565
BssT1I	CCWWGG	6 cut(s)	28, 488, 560, 1055, 1071, 1859
Bst2UI	CCWGG	2 cut(s)	54, 972
Bst4CI	ACNGT	4 cut(s)	363, 370, 1495, 1722
Bst6I	CTCTTC	2 cut(s)	1467, 1752
BstACI	GRCGYC	1 cut(s)	565
BstAFI	CTTAAG	1 cut(s)	1745
BstAPI	GCANNNNNTGC	2 cut(s)	199, 764
BstBAI	YACGTR	1 cut(s)	116
BstC8I	GCNNGC	8 cut(s)	84, 444, 734, 859, 1122, 1652, 1966, 1970
BstDEI	CTNAG	9 cut(s)	10, 606, 641, 822, 987, 1109, 1191, 1611, 1625
BstDSI	CCRYGG	3 cut(s)	488, 1055, 1859
BstF5I	GGATG	9 cut(s)	22, 218, 590, 631, 888, 980, 1021, 1148, 1858
BstH2I	RGCGCY	1 cut(s)	568
BstHHI	GCGC	1 cut(s)	567
BstMAI	GTCTC	6 cut(s)	673, 682, 1200, 1230, 1402, 1469
BstMWI	GCNNNNNNNGC	8 cut(s)	11, 199, 538, 562, 571, 626, 764, 1126
BstNI	CCWGG	2 cut(s)	54, 972
BstNSI	RCATGY	4 cut(s)	86, 446, 736, 1684
BstSCI	CCNGG	2 cut(s)	52, 970
BstSFI	CTRYAG	5 cut(s)	1213, 1429, 1707, 1873, 2013
BstV1I	GCAGC	6 cut(s)	205, 648, 1300, 1652, 1887, 1997
BstV2I	GAAGAC	1 cut(s)	2007
BstX2I	RGATCY	3 cut(s)	337, 1738, 1790
BstYI	RGATCY	3 cut(s)	337, 1738, 1790
Bsu15I	ATCGAT	1 cut(s)	1579
BsuI	GTATCC	1 cut(s)	1507
BsuRI	GGCC	3 cut(s)	1129, 1342, 1968
BsuTUI	ATCGAT	1 cut(s)	1579
BtgI	CCRYGG	3 cut(s)	488, 1055, 1859
BtsCI	GGATG	9 cut(s)	22, 218, 590, 631, 888, 980, 1021, 1148, 1858
BtsIMutI	CAGTG	7 cut(s)	368, 464, 940, 1106, 1166, 1416, 1995
BveI	ACCTGC	2 cut(s)	1111, 1798
Cac8I	GCNNGC	8 cut(s)	84, 444, 734, 859, 1122, 1652, 1966, 1970
CaiI	CAGNNNCTG	1 cut(s)	971
CciI	TCATGA	1 cut(s)	684
CfoI	GCGC	1 cut(s)	567
Cfr13I	GGNCC	3 cut(s)	95, 1006, 2021
ClaI	ATCGAT	1 cut(s)	1579
CsiI	ACCWGGT	1 cut(s)	52
Csp6I	GTAC	5 cut(s)	366, 371, 847, 939, 1732
CspCI	CAANNNNNGTGG	2 cut(s)	1378, 1413
CviQI	GTAC	5 cut(s)	366, 371, 847, 939, 1732
DdeI	CTNAG	9 cut(s)	10, 606, 641, 822, 987, 1109, 1191, 1611, 1625
DinI	GGCGCC	1 cut(s)	566
DraIII	CACNNNGTG	4 cut(s)	56, 419, 1172, 1229
EaeI	YGGCCR	1 cut(s)	1966
Eam1104I	CTCTTC	2 cut(s)	1467, 1752
EarI	CTCTTC	2 cut(s)	1467, 1752
Eco130I	CCWWGG	6 cut(s)	28, 488, 560, 1055, 1071, 1859
Eco24I	GRGCYC	3 cut(s)	1023, 1071, 1126
Eco47I	GGWCC	3 cut(s)	95, 1006, 2021
Eco57I	CTGAAG	3 cut(s)	1578, 2001, 2019
Eco72I	CACGTG	1 cut(s)	116
EcoRI	GAATTC	2 cut(s)	982, 1443
EcoRII	CCWGG	2 cut(s)	52, 970
EcoT14I	CCWWGG	6 cut(s)	28, 488, 560, 1055, 1071, 1859
EcoT22I	ATGCAT	3 cut(s)	180, 631, 738
EcoT38I	GRGCYC	3 cut(s)	1023, 1071, 1126
EgeI	GGCGCC	1 cut(s)	566
EheI	GGCGCC	1 cut(s)	566
ErhI	CCWWGG	6 cut(s)	28, 488, 560, 1055, 1071, 1859
FaqI	GGGAC	3 cut(s)	61, 81, 793
FauI	CCCGC	1 cut(s)	1113
FauNDI	CATATG	1 cut(s)	153
FblI	GTMKAC	1 cut(s)	1815
Fnu4HI	GCNGC	6 cut(s)	194, 662, 1314, 1666, 1876, 1986
FokI	GGATG	9 cut(s)	9, 205, 597, 638, 895, 987, 1028, 1135, 1865
FriOI	GRGCYC	3 cut(s)	1023, 1071, 1126
Fsp4HI	GCNGC	6 cut(s)	194, 662, 1314, 1666, 1876, 1986
FspBI	CTAG	2 cut(s)	723, 1754
GlaI	GCGC	1 cut(s)	566
GluI	GCNGC	6 cut(s)	194, 662, 1314, 1666, 1876, 1986
GsaI	CCCAGC	2 cut(s)	481, 624
HaeII	RGCGCY	1 cut(s)	568
HaeIII	GGCC	3 cut(s)	1129, 1342, 1968
HapII	CCGG	1 cut(s)	1660
HhaI	GCGC	1 cut(s)	567
Hin1I	GRCGYC	1 cut(s)	565
Hin6I	GCGC	1 cut(s)	565
HinP1I	GCGC	1 cut(s)	565
HincII	GTYRAC	2 cut(s)	841, 1993
HindII	GTYRAC	2 cut(s)	841, 1993
HinfI	GANTC	7 cut(s)	423, 681, 1193, 1220, 1544, 1640, 1976
HpaI	GTTAAC	1 cut(s)	841
HpaII	CCGG	1 cut(s)	1660
Hpy166II	GTNNAC	6 cut(s)	366, 841, 1678, 1781, 1816, 1993
Hpy188III	TCNNGA	7 cut(s)	39, 685, 920, 1235, 1500, 1596, 1660
Hpy8I	GTNNAC	6 cut(s)	366, 841, 1678, 1781, 1816, 1993
HpyAV	CCTTC	9 cut(s)	113, 119, 213, 443, 921, 1152, 1602, 1695, 1769
HpyCH4III	ACNGT	4 cut(s)	363, 370, 1495, 1722
HpyCH4IV	ACGT	1 cut(s)	115
HpyF10VI	GCNNNNNNNGC	8 cut(s)	11, 199, 538, 562, 571, 626, 764, 1126
HpyF3I	CTNAG	9 cut(s)	10, 606, 641, 822, 987, 1109, 1191, 1611, 1625
HpySE526I	ACGT	1 cut(s)	115
Hsp92I	GRCGYC	1 cut(s)	565
HspAI	GCGC	1 cut(s)	565
KasI	GGCGCC	1 cut(s)	564
Kpn2I	TCCGGA	1 cut(s)	1659
KspAI	GTTAAC	1 cut(s)	841
LmnI	GCTCC	4 cut(s)	124, 190, 1066, 1662
Lsp1109I	GCAGC	6 cut(s)	205, 648, 1300, 1652, 1887, 1997
LweI	GCATC	9 cut(s)	49, 179, 187, 515, 616, 745, 767, 1528, 1597
MabI	ACCWGGT	1 cut(s)	52
MaeI	CTAG	2 cut(s)	723, 1754
MaeII	ACGT	1 cut(s)	115
MaeIII	GTNAC	6 cut(s)	103, 292, 325, 725, 1360, 1489
MbiI	CCGCTC	1 cut(s)	1729
MboII	GAAGA	8 cut(s)	206, 702, 1484, 1580, 1769, 1841, 1900, 2012
MfeI	CAATTG	1 cut(s)	942
MflI	RGATCY	3 cut(s)	337, 1738, 1790
MhlI	GDGCHC	3 cut(s)	1023, 1071, 1126
MlsI	TGGCCA	1 cut(s)	1968
MluNI	TGGCCA	1 cut(s)	1968
Mly113I	GGCGCC	1 cut(s)	565
MlyI	GAGTC	3 cut(s)	675, 1202, 1214
MmeI	TCCRAC	6 cut(s)	168, 649, 928, 934, 1678, 1999
Mox20I	TGGCCA	1 cut(s)	1968
Mph1103I	ATGCAT	3 cut(s)	180, 631, 738
MroI	TCCGGA	1 cut(s)	1659
MscI	TGGCCA	1 cut(s)	1968
MseI	TTAA	4 cut(s)	243, 840, 891, 1746
MslI	CAYNNNNRTG	5 cut(s)	87, 447, 522, 973, 1841
Msp20I	TGGCCA	1 cut(s)	1968
MspA1I	CMGCKG	2 cut(s)	1948, 1972
MspCI	CTTAAG	1 cut(s)	1745
MspI	CCGG	1 cut(s)	1660
MspR9I	CCNGG	2 cut(s)	54, 972
MunI	CAATTG	1 cut(s)	942
Mva1269I	GAATGC	1 cut(s)	5
MvaI	CCWGG	2 cut(s)	54, 972
MwoI	GCNNNNNNNGC	8 cut(s)	11, 199, 538, 562, 571, 626, 764, 1126
NarI	GGCGCC	1 cut(s)	565
NcoI	CCATGG	3 cut(s)	488, 1055, 1859
NdeI	CATATG	1 cut(s)	153
NlaIV	GGNNCC	3 cut(s)	97, 566, 1068
NmeAIII	GCCGAG	1 cut(s)	1105
NmuCI	GTSAC	2 cut(s)	103, 725
NsiI	ATGCAT	3 cut(s)	180, 631, 738
NspI	RCATGY	4 cut(s)	86, 446, 736, 1684
PaeI	GCATGC	3 cut(s)	86, 446, 736
PagI	TCATGA	1 cut(s)	684
PctI	GAATGC	1 cut(s)	5
PfeI	GAWTC	4 cut(s)	423, 1544, 1640, 1976
PkrI	GCNGC	6 cut(s)	195, 663, 1315, 1667, 1877, 1987
PleI	GAGTC	3 cut(s)	675, 1201, 1214
PluTI	GGCGCC	1 cut(s)	568
PmaCI	CACGTG	1 cut(s)	116
PmlI	CACGTG	1 cut(s)	116
PpsI	GAGTC	3 cut(s)	675, 1201, 1214
Ppu21I	YACGTR	1 cut(s)	116
Psp6I	CCWGG	2 cut(s)	52, 970
PspCI	CACGTG	1 cut(s)	116
PspFI	CCCAGC	2 cut(s)	477, 620
PspGI	CCWGG	2 cut(s)	52, 970
PspN4I	GGNNCC	3 cut(s)	97, 566, 1068
PspPI	GGNCC	3 cut(s)	95, 1006, 2021
PstI	CTGCAG	1 cut(s)	1877
PstNI	CAGNNNCTG	1 cut(s)	971
PsuI	RGATCY	3 cut(s)	337, 1738, 1790
PvuII	CAGCTG	1 cut(s)	1972
RsaI	GTAC	5 cut(s)	367, 372, 848, 940, 1733
RsaNI	GTAC	5 cut(s)	366, 371, 847, 939, 1732
RseI	CAYNNNNRTG	5 cut(s)	87, 447, 522, 973, 1841
SaqAI	TTAA	4 cut(s)	243, 840, 891, 1746
SatI	GCNGC	6 cut(s)	194, 662, 1314, 1666, 1876, 1986
Sau96I	GGNCC	3 cut(s)	95, 1006, 2021
SchI	GAGTC	3 cut(s)	675, 1202, 1214
ScrFI	CCNGG	2 cut(s)	54, 972
SduI	GDGCHC	3 cut(s)	1023, 1071, 1126
SexAI	ACCWGGT	1 cut(s)	52
SfaNI	GCATC	9 cut(s)	49, 179, 187, 515, 616, 745, 767, 1528, 1597
SfcI	CTRYAG	5 cut(s)	1213, 1429, 1707, 1873, 2013
SfoI	GGCGCC	1 cut(s)	566
SinI	GGWCC	3 cut(s)	95, 1006, 2021
SmiMI	CAYNNNNRTG	5 cut(s)	87, 447, 522, 973, 1841
SmlI	CTYRAG	1 cut(s)	1745
SmoI	CTYRAG	1 cut(s)	1745
SphI	GCATGC	3 cut(s)	86, 446, 736
SsiI	CCGC	4 cut(s)	1120, 1541, 1729, 1946
SspDI	GGCGCC	1 cut(s)	564
SspI	AATATT	1 cut(s)	1032
SspMI	CTAG	2 cut(s)	723, 1754
StyD4I	CCNGG	2 cut(s)	52, 970
StyI	CCWWGG	6 cut(s)	28, 488, 560, 1055, 1071, 1859
TaaI	ACNGT	4 cut(s)	363, 370, 1495, 1722
TaiI	ACGT	1 cut(s)	118
TaqI	TCGA	6 cut(s)	550, 1045, 1234, 1348, 1579, 1767
TaqII	GACCGA	2 cut(s)	807, 2019
TatI	WGTACW	1 cut(s)	846
TfiI	GAWTC	4 cut(s)	423, 1544, 1640, 1976
Tru1I	TTAA	4 cut(s)	243, 840, 891, 1746
Tru9I	TTAA	4 cut(s)	243, 840, 891, 1746
TscAI	CASTG	7 cut(s)	368, 471, 940, 1113, 1173, 1423, 2002
TseFI	GTSAC	2 cut(s)	103, 725
TseI	GCWGC	6 cut(s)	193, 661, 1313, 1665, 1875, 1985
Tsp45I	GTSAC	2 cut(s)	103, 725
TspDTI	ATGAA	6 cut(s)	195, 366, 540, 1400, 1518, 1842
TspGWI	ACGGA	1 cut(s)	418
TspRI	CASTG	7 cut(s)	368, 471, 940, 1113, 1173, 1423, 2002
Vha464I	CTTAAG	1 cut(s)	1745
VpaK11BI	GGWCC	3 cut(s)	95, 1006, 2021
XapI	RAATTY	4 cut(s)	225, 982, 1443, 1459
XceI	RCATGY	4 cut(s)	86, 446, 736, 1684
XmiI	GTMKAC	1 cut(s)	1815
XspI	CTAG	2 cut(s)	723, 1754
Zsp2I	ATGCAT	3 cut(s)	180, 631, 738

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.