Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0008819

Physical Location & Seq

Genomic Coordinates Reverse (-)

31009863 .. 31017696

Gene Structure 7834 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002269

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2190 bp

ATGGAAGATTTTATTGATTTTGTTCCCAATTCTAGAAGAAGAAGAAGAAGAAGAAGAAGAAAAAAGTTCATTTCCAAATTTACTTTTGCTGAAAAGATTGGCCATATTACGGAAACAAAGAATAAAGCTTCGGTGGTCGGAGGATATTTGGTTAGTCTTGCTATGGCGCTCTCAGCTTCAAATCATCCCTCAGGAGTTGCCCGTCCAGGGACAAGTGATGCTTTGTTTAAGGAGCTATGGCATGCTTGTGCTGGACCCCTTGTCACCCTGCCACGTGAAGGGGAGCGAGTTTATTACTTTCCCCAGGGACACATGGAACAGCTGGAGGCATCAATGCATCAGATGTCGGAGCAGCAAATGCCTTCATTCAATCTGCCATCCAAAATTTTATGTAAAGTTGTTAATGTTCAGCTTCGGGCTGAACCAGAAACCGACGAAGTTTATGCGCAAGTTACTCTGCTACCAGAAACTGATCAAAGCGAGGTAACAAGCCCAGATCCTCCTCTCCCAGAAATTCCACGCTGTACAGTCCATTCATTTTGCAAGACACTTACTGCTTCTGACACAAGTACACATGGGGGATTCTCTGTCCTTCGGAGGCATGCTGATGATTGTCTGCCACCACTGGATATGTCTCAGCAGCCTCCTTGGCAAGAACTAGTTGCAACTGATCTGCACGGAAATGAATGGCATTTTCGGCATATATTTCGAGGGCAACCTAGGCGCCACTTACTCACAACTGGGTGGAGTGTTTTTGTTAGTTCCAAAAAATTAGTAGCTGGTGATGCGTTTATATTCCTAAGAGGTGAGACTGGGGAGCTGCGTGTCGGTGTCAGGAGACTGATGAGACAACCAAGCAATATGCCATCTTCTGTCATTTCTAGTCACAGTATGCATCTTGGAGTCCTAGCTACTGCATCTCATGCCATTGCAACTGGGACACTATTTTCGGTCTTCTACAAGCCAAGAACAAGTCGATCTGAGTTCCTTGTTAGTGTCAACAAGTACCTTGAAGCTCGCAGTCACAAACTCTCTGTTGGGATGAGGTTTAAGATGAGATTTGAGGGTGAGGAAGTTCCTGAAAGAAGGTTCAGTGGCACGATTGTTGGTGTTGGGGATAATACATCACCTGGATGGGCAAATTCTGAGTGGCGCTCTCTAAAGGTCCAATGGGATGAACCCTCATCTATATTGCGGCCAGATAGAGTCTCACCTTGGGAATTGGAGCCCCTGGTAGCGACTACTCCACTAAACTCTCAACCTGCTCTGAGAAACAAGCGGGCACGACCTCCTGTTTTACCTTCCTCATCCCCAGATCTTTCTGCACTGAGTGAGTGGAAATCCCAAGTAGAATCTCCTTCGGCTTTCTCATATAATGACCCTCAGCGTGGTCGAGACCTCTATCCATCACCCAAGTATAGTTCTGCTTCAAAAGCCAATTCTCTTTGTTTTAAGGGCAATAATTCTCTAGCTGCTGTTTCTGCGAACCCAATGTTTTGGTCCAATCGAGTTGAAGCCGTTACAGAGTCTTTTTCACCTGTTATGAGAGATTCGGTGGAAAGGAGACAAAGCACTGGGAATGGCTGTAGGCTGTTTGGAATTCAGTTGCTTGATAACTCTAATGTAGAAGAGACTTCATCCATGGTAGTGTCTGGAAAGCTGAGGGATGTTCAACCAATTTCTTCATTTGATGCTGAATCTGACCAACACTCAGAACCATCAAATGTCAACCGATCTGATCTTCCTTCAGGAAGTTGTGACGCTGAAAAATCATCCCTCAGATCACCTCAGGAATCGCAAAGCAGGCAAATTCGGAGTTGCACAAAGGTTCATATGCAAGGGATTGCAGTAGGAAGAGCTGTAGATTTAGCACGGTTTGAGGGATATGAGGACCTGCTTAAGAAACTGGAAGATATGTTTGATATTGAGGGCGAGCTGAGTGGATCTACCAAGAAATGGCAAGTTGTCTACACTGATGATGAGGATGACATGATGATGGTTGGGGATGACCCATGGCATGAGTTCTGCAGCATGGTAAGGAAGATTTTCATCTATACAGTGGAGGAAGTGAAGAGGTTGTCACCCAAGATAAAACTTCCAGTAGGTGGAGAGGCTAAACAAGGCAAGCTAGATTCTGAAGCAGCTATCAATGCAGAAGACGGGTCATCTGTTGTGGGGACGGCATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007568 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009889 GO:0009890 GO:0009892 GO:0010033 GO:0010150 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0042221 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048366 GO:0048367 GO:0048519 GO:0048523 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0090693 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA Auxin_resp B3

Protein Analysis

730

Amino Acids

81.44

Weight (kDa)

7.3

Isoelectric Point (pI)

64.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	180 - 280	8.4e-22	B3 DNA binding domain
BRWD_AD	PF25313	306 - 411	2e-08	BRWD/PHIP ancillary domain-like domain
ARF_AD	PF06507	329 - 411	2.4e-33	Auxin response factor ancillary domain
AUX_IAA	PF02309	596 - 695	3e-11	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008819)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G59750 AT1G59750 AT1G59750 AT1G59750
fragaria_vesca	FvH4_5g27860 FvH4_5g27860 FvH4_5g27860 FvH4_5g27860 FvH4_5g27860
malus_domestica	MD08G1247700.v1.1
prunus_persica	Prupe.1G585200_v2.0.a1 Prupe.1G585200_v2.0.a1
pyrus_communis	pycom08g21460
rosa_chinensis	RchiOBHm_Chr7g0219771
rosa_laevigata	RLG00000002269
rosa_multiflora	Rmu_sc0005014.1_g000017
rosa_roxburghii	Rroxscaffold_3G00239870
rosa_rugosa	Rorug07G0187800 Rorug07G0187900
rosa_samantha	Rh7AG331600 Rh7BG321200 Rh7CG349000
rosa_wichuraiana	Rw7G027920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	447
Acc36I	ACCTGC	2 cut(s)	1270, 1902
AccB1I	GGYRCC	1 cut(s)	723
AccB7I	CCANNNNNTGG	2 cut(s)	1956, 2105
AccI	GTMKAC	1 cut(s)	1968
AciI	CCGC	2 cut(s)	1195, 1279
AclWI	GGATC	2 cut(s)	491, 1951
AcoI	YGGCCR	2 cut(s)	100, 1196
AcsI	RAATTY	6 cut(s)	77, 384, 513, 1141, 1599, 1809
AcuI	CTGAAG	2 cut(s)	1731, 2157
AcvI	CACGTG	1 cut(s)	275
AcyI	GRCGYC	1 cut(s)	724
AdeI	CACNNNGTG	1 cut(s)	1331
AfaI	GTAC	3 cut(s)	526, 571, 1007
AfiI	CCNNNNNNNGG	6 cut(s)	109, 207, 278, 1388, 1956, 2105
AflII	CTTAAG	1 cut(s)	1898
AgsI	TTSAA	6 cut(s)	180, 370, 1013, 1431, 1514, 1673
AhdI	GACNNNNNGTC	1 cut(s)	260
AhlI	ACTAGT	1 cut(s)	658
AjnI	CCWGG	4 cut(s)	205, 303, 1129, 1230
Alw26I	GTCTC	8 cut(s)	639, 803, 832, 841, 1213, 1389, 1558, 1625
AlwI	GGATC	2 cut(s)	491, 1951
AlwNI	CAGNNNCTG	1 cut(s)	470
AoxI	GGCC	2 cut(s)	100, 1196
ApeKI	GCWGC	6 cut(s)	352, 640, 820, 1472, 2028, 2141
ApoI	RAATTY	6 cut(s)	77, 384, 513, 1141, 1599, 1809
ArsI	GACNNNNNNTTYG	2 cut(s)	931, 963
Asp700I	GAANNNNTTC	1 cut(s)	2045
AspA2I	CCTAGG	1 cut(s)	719
AspLEI	GCGC	4 cut(s)	169, 448, 726, 1155
AspS9I	GGNCC	4 cut(s)	254, 1165, 1500, 1891
AvaII	GGWCC	4 cut(s)	254, 1165, 1500, 1891
AvrII	CCTAGG	1 cut(s)	719
AxyI	CCTNAGG	2 cut(s)	190, 1788
BaeGI	GKGCMC	1 cut(s)	1285
BalI	TGGCCA	1 cut(s)	102
BanI	GGYRCC	1 cut(s)	723
BanII	GRGCYC	1 cut(s)	1230
BbrPI	CACGTG	1 cut(s)	275
BbsI	GAAGAC	2 cut(s)	946, 2163
BbvCI	CCTCAGC	2 cut(s)	1383, 1661
BbvI	GCAGC	6 cut(s)	364, 652, 807, 1459, 2040, 2153
BccI	CCATC	6 cut(s)	385, 874, 1128, 1414, 1726, 1990
BceAI	ACGGC	1 cut(s)	1502
BcgI	CGANNNNNNTGC	4 cut(s)	425, 459, 689, 723
BciT130I	CCWGG	4 cut(s)	207, 305, 1131, 1232
BclI	TGATCA	1 cut(s)	472
BcoDI	GTCTC	8 cut(s)	639, 803, 832, 841, 1213, 1389, 1558, 1625
BcuI	ACTAGT	1 cut(s)	658
BfaI	CTAG	7 cut(s)	33, 659, 720, 882, 908, 1469, 2129
BfmI	CTRYAG	3 cut(s)	1585, 1860, 2026
BfoI	RGCGCY	3 cut(s)	170, 727, 1156
BfrI	CTTAAG	1 cut(s)	1898
BfuAI	ACCTGC	2 cut(s)	1270, 1902
BglI	GCCNNNNNGGC	1 cut(s)	649
BglII	AGATCT	1 cut(s)	1315
BisI	GCNGC	7 cut(s)	353, 641, 821, 1196, 1473, 2029, 2142
BlnI	CCTAGG	1 cut(s)	719
BlsI	GCNGC	7 cut(s)	354, 642, 822, 1197, 1474, 2030, 2143
Bme1390I	CCNGG	4 cut(s)	207, 305, 1131, 1232
Bme18I	GGWCC	4 cut(s)	254, 1165, 1500, 1891
BmeRI	GACNNNNNGTC	1 cut(s)	260
BmgT120I	GGNCC	4 cut(s)	254, 1165, 1500, 1891
BmiI	GGNNCC	3 cut(s)	256, 725, 1227
BmrFI	CCNGG	4 cut(s)	207, 305, 1131, 1232
BmrI	ACTGGG	4 cut(s)	750, 822, 945, 1584
BmsI	GCATC	7 cut(s)	208, 338, 346, 775, 904, 926, 1681
BmuI	ACTGGG	4 cut(s)	750, 822, 945, 1584
BpiI	GAAGAC	2 cut(s)	946, 2163
BplI	GAGNNNNNCTC	2 cut(s)	1139, 1171
BpmI	CTGGAG	1 cut(s)	344
Bpu10I	CCTNAGC	2 cut(s)	1383, 1661
BsaAI	YACGTR	1 cut(s)	275
BsaBI	GATNNNNATC	1 cut(s)	2048
BsaHI	GRCGYC	1 cut(s)	724
BsaI	GGTCTC	1 cut(s)	1389
BsaJI	CCNNGG	9 cut(s)	206, 303, 304, 647, 719, 1214, 1230, 1641, 2012
Bsc4I	CCNNNNNNNGG	6 cut(s)	109, 207, 278, 1388, 1956, 2105
Bse1I	ACTGG	7 cut(s)	630, 745, 817, 940, 1579, 1911, 2099
Bse21I	CCTNAGG	2 cut(s)	190, 1788
Bse3DI	GCAATG	1 cut(s)	927
Bse8I	GATNNNNATC	1 cut(s)	2048
BseBI	CCWGG	4 cut(s)	207, 305, 1131, 1232
BseDI	CCNNGG	9 cut(s)	206, 303, 304, 647, 719, 1214, 1230, 1641, 2012
BseJI	GATNNNNATC	1 cut(s)	2048
BseLI	CCNNNNNNNGG	6 cut(s)	109, 207, 278, 1388, 1956, 2105
BseMI	GCAATG	1 cut(s)	927
BseNI	ACTGG	7 cut(s)	630, 745, 817, 940, 1579, 1911, 2099
BseRI	GAGGAG	1 cut(s)	492
BseSI	GKGCMC	1 cut(s)	1285
BseXI	GCAGC	6 cut(s)	364, 652, 807, 1459, 2040, 2153
BsgI	GTGCAG	2 cut(s)	659, 1308
BshFI	GGCC	2 cut(s)	102, 1198
BshNI	GGYRCC	1 cut(s)	723
BslFI	GGGAC	3 cut(s)	223, 321, 952
BslI	CCNNNNNNNGG	6 cut(s)	109, 207, 278, 1388, 1956, 2105
BsmAI	GTCTC	8 cut(s)	639, 803, 832, 841, 1213, 1389, 1558, 1625
BsmFI	GGGAC	3 cut(s)	223, 321, 952
BsnI	GGCC	2 cut(s)	102, 1198
Bso31I	GGTCTC	1 cut(s)	1389
Bsp1286I	GDGCHC	2 cut(s)	1230, 1285
Bsp1407I	TGTACA	1 cut(s)	524
Bsp143I	GATC	9 cut(s)	472, 496, 670, 977, 1315, 1733, 1738, 1781, 1943
Bsp19I	CCATGG	2 cut(s)	1641, 2012
BspACI	CCGC	2 cut(s)	1195, 1279
BspANI	GGCC	2 cut(s)	102, 1198
BspLI	GGNNCC	3 cut(s)	256, 725, 1227
BspMAI	CTGCAG	1 cut(s)	2030
BspMI	ACCTGC	2 cut(s)	1270, 1902
BspPI	GGATC	2 cut(s)	491, 1951
BspQI	GCTCTTC	1 cut(s)	1849
BspT107I	GGYRCC	1 cut(s)	723
BspTI	CTTAAG	1 cut(s)	1898
BspTNI	GGTCTC	1 cut(s)	1389
BsrDI	GCAATG	1 cut(s)	927
BsrGI	TGTACA	1 cut(s)	524
BsrI	ACTGG	7 cut(s)	630, 745, 817, 940, 1579, 1911, 2099
BssECI	CCNNGG	9 cut(s)	206, 303, 304, 647, 719, 1214, 1230, 1641, 2012
BssMI	GATC	9 cut(s)	472, 496, 670, 977, 1315, 1733, 1738, 1781, 1943
BssNI	GRCGYC	1 cut(s)	724
BssT1I	CCWWGG	5 cut(s)	647, 719, 1214, 1641, 2012
Bst2UI	CCWGG	4 cut(s)	207, 305, 1131, 1232
Bst4CI	ACNGT	4 cut(s)	529, 890, 1875, 2059
Bst6I	CTCTTC	3 cut(s)	1623, 1849, 2066
BstACI	GRCGYC	1 cut(s)	724
BstAFI	CTTAAG	1 cut(s)	1898
BstAPI	GCANNNNNTGC	2 cut(s)	358, 923
BstAUI	TGTACA	1 cut(s)	524
BstBAI	YACGTR	1 cut(s)	275
BstC8I	GCNNGC	7 cut(s)	243, 603, 1018, 1281, 1805, 1934, 2126
BstDSI	CCRYGG	2 cut(s)	1641, 2012
BstH2I	RGCGCY	3 cut(s)	170, 727, 1156
BstHHI	GCGC	4 cut(s)	169, 448, 726, 1155
BstKTI	GATC	9 cut(s)	475, 499, 673, 980, 1318, 1736, 1741, 1784, 1946
BstMAI	GTCTC	8 cut(s)	639, 803, 832, 841, 1213, 1389, 1558, 1625
BstMBI	GATC	9 cut(s)	472, 496, 670, 977, 1315, 1733, 1738, 1781, 1943
BstNI	CCWGG	4 cut(s)	207, 305, 1131, 1232
BstNSI	RCATGY	2 cut(s)	245, 605
BstSCI	CCNGG	4 cut(s)	205, 303, 1129, 1230
BstSFI	CTRYAG	3 cut(s)	1585, 1860, 2026
BstSLI	GKGCMC	1 cut(s)	1285
BstV1I	GCAGC	6 cut(s)	364, 652, 807, 1459, 2040, 2153
BstV2I	GAAGAC	2 cut(s)	946, 2163
BstX2I	RGATCY	3 cut(s)	496, 1315, 1943
BstXI	CCANNNNNNTGG	1 cut(s)	1497
BstYI	RGATCY	3 cut(s)	496, 1315, 1943
Bsu36I	CCTNAGG	2 cut(s)	190, 1788
BsuRI	GGCC	2 cut(s)	102, 1198
BtgI	CCRYGG	2 cut(s)	1641, 2012
BtsIMutI	CAGTG	6 cut(s)	623, 1099, 1325, 1572, 1971, 2064
BveI	ACCTGC	2 cut(s)	1270, 1902
Cac8I	GCNNGC	7 cut(s)	243, 603, 1018, 1281, 1805, 1934, 2126
CaiI	CAGNNNCTG	1 cut(s)	470
CfoI	GCGC	4 cut(s)	169, 448, 726, 1155
Cfr13I	GGNCC	4 cut(s)	254, 1165, 1500, 1891
CseI	GACGC	1 cut(s)	1769
Csp6I	GTAC	3 cut(s)	525, 570, 1006
CviQI	GTAC	3 cut(s)	525, 570, 1006
DinI	GGCGCC	1 cut(s)	725
DpnI	GATC	9 cut(s)	474, 498, 672, 979, 1317, 1735, 1740, 1783, 1945
DpnII	GATC	9 cut(s)	472, 496, 670, 977, 1315, 1733, 1738, 1781, 1943
DraIII	CACNNNGTG	1 cut(s)	1331
DriI	GACNNNNNGTC	1 cut(s)	260
EaeI	YGGCCR	2 cut(s)	100, 1196
Eam1104I	CTCTTC	3 cut(s)	1623, 1849, 2066
Eam1105I	GACNNNNNGTC	1 cut(s)	260
EarI	CTCTTC	3 cut(s)	1623, 1849, 2066
Eco130I	CCWWGG	5 cut(s)	647, 719, 1214, 1641, 2012
Eco24I	GRGCYC	1 cut(s)	1230
Eco31I	GGTCTC	1 cut(s)	1389
Eco47I	GGWCC	4 cut(s)	254, 1165, 1500, 1891
Eco57I	CTGAAG	2 cut(s)	1731, 2157
Eco72I	CACGTG	1 cut(s)	275
Eco81I	CCTNAGG	2 cut(s)	190, 1788
EcoO109I	RGGNCCY	1 cut(s)	1891
EcoRI	GAATTC	1 cut(s)	1599
EcoRII	CCWGG	4 cut(s)	205, 303, 1129, 1230
EcoT14I	CCWWGG	5 cut(s)	647, 719, 1214, 1641, 2012
EcoT22I	ATGCAT	2 cut(s)	339, 897
EcoT38I	GRGCYC	1 cut(s)	1230
EgeI	GGCGCC	1 cut(s)	725
EheI	GGCGCC	1 cut(s)	725
ErhI	CCWWGG	5 cut(s)	647, 719, 1214, 1641, 2012
FalI	AAGNNNNNCTT	2 cut(s)	205, 237
FaqI	GGGAC	3 cut(s)	223, 321, 952
FauI	CCCGC	1 cut(s)	1272
FauNDI	CATATG	1 cut(s)	1833
FbaI	TGATCA	1 cut(s)	472
FblI	GTMKAC	1 cut(s)	1968
Fnu4HI	GCNGC	7 cut(s)	353, 641, 821, 1196, 1473, 2029, 2142
FriOI	GRGCYC	1 cut(s)	1230
Fsp4HI	GCNGC	7 cut(s)	353, 641, 821, 1196, 1473, 2029, 2142
FspBI	CTAG	7 cut(s)	33, 659, 720, 882, 908, 1469, 2129
FspI	TGCGCA	1 cut(s)	447
GlaI	GCGC	4 cut(s)	168, 447, 725, 1154
GluI	GCNGC	7 cut(s)	353, 641, 821, 1196, 1473, 2029, 2142
GsuI	CTGGAG	1 cut(s)	344
HaeII	RGCGCY	3 cut(s)	170, 727, 1156
HaeIII	GGCC	2 cut(s)	102, 1198
HgaI	GACGC	1 cut(s)	1769
HhaI	GCGC	4 cut(s)	169, 448, 726, 1155
Hin1I	GRCGYC	1 cut(s)	724
Hin6I	GCGC	4 cut(s)	167, 446, 724, 1153
HinP1I	GCGC	4 cut(s)	167, 446, 724, 1153
HincII	GTYRAC	2 cut(s)	1000, 1729
HindII	GTYRAC	2 cut(s)	1000, 1729
HindIII	AAGCTT	1 cut(s)	126
HinfI	GANTC	9 cut(s)	582, 903, 1206, 1352, 1526, 1550, 1697, 1793, 2132
Hpy166II	GTNNAC	4 cut(s)	572, 1000, 1729, 1969
Hpy188III	TCNNGA	8 cut(s)	33, 192, 835, 1079, 1394, 1653, 1749, 1790
Hpy8I	GTNNAC	4 cut(s)	572, 1000, 1729, 1969
Hpy99I	CGWCG	1 cut(s)	437
HpyAV	CCTTC	7 cut(s)	272, 372, 602, 1080, 1311, 1368, 1755
HpyCH4III	ACNGT	4 cut(s)	529, 890, 1875, 2059
HpyCH4IV	ACGT	1 cut(s)	274
HpySE526I	ACGT	1 cut(s)	274
Hsp92I	GRCGYC	1 cut(s)	724
HspAI	GCGC	4 cut(s)	167, 446, 724, 1153
KasI	GGCGCC	1 cut(s)	723
Ksp22I	TGATCA	1 cut(s)	472
Kzo9I	GATC	9 cut(s)	472, 496, 670, 977, 1315, 1733, 1738, 1781, 1943
LguI	GCTCTTC	1 cut(s)	1849
LmnI	GCTCC	5 cut(s)	232, 283, 349, 817, 1225
Lsp1109I	GCAGC	6 cut(s)	364, 652, 807, 1459, 2040, 2153
LweI	GCATC	7 cut(s)	208, 338, 346, 775, 904, 926, 1681
MaeI	CTAG	7 cut(s)	33, 659, 720, 882, 908, 1469, 2129
MaeII	ACGT	1 cut(s)	274
MaeIII	GTNAC	8 cut(s)	262, 451, 484, 884, 1022, 1519, 1757, 2079
MalI	GATC	9 cut(s)	474, 498, 672, 979, 1317, 1735, 1740, 1783, 1945
MboI	GATC	9 cut(s)	472, 496, 670, 977, 1315, 1733, 1738, 1781, 1943
MflI	RGATCY	3 cut(s)	496, 1315, 1943
MhlI	GDGCHC	2 cut(s)	1230, 1285
MlsI	TGGCCA	1 cut(s)	102
MluNI	TGGCCA	1 cut(s)	102
Mly113I	GGCGCC	1 cut(s)	724
MlyI	GAGTC	3 cut(s)	912, 1215, 1535
MmeI	TCCRAC	2 cut(s)	118, 327
Mox20I	TGGCCA	1 cut(s)	102
Mph1103I	ATGCAT	2 cut(s)	339, 897
MroXI	GAANNNNTTC	1 cut(s)	2045
MscI	TGGCCA	1 cut(s)	102
MseI	TTAA	5 cut(s)	228, 402, 1050, 1452, 1899
MslI	CAYNNNNRTG	6 cut(s)	246, 606, 681, 1132, 1646, 1994
Msp20I	TGGCCA	1 cut(s)	102
MspA1I	CMGCKG	1 cut(s)	322
MspCI	CTTAAG	1 cut(s)	1898
MspR9I	CCNGG	4 cut(s)	207, 305, 1131, 1232
MvaI	CCWGG	4 cut(s)	207, 305, 1131, 1232
NarI	GGCGCC	1 cut(s)	724
NcoI	CCATGG	2 cut(s)	1641, 2012
NdeI	CATATG	1 cut(s)	1833
NdeII	GATC	9 cut(s)	472, 496, 670, 977, 1315, 1733, 1738, 1781, 1943
NlaIV	GGNNCC	3 cut(s)	256, 725, 1227
NmuCI	GTSAC	5 cut(s)	262, 884, 1022, 1757, 2079
NsbI	TGCGCA	1 cut(s)	447
NsiI	ATGCAT	2 cut(s)	339, 897
NspI	RCATGY	2 cut(s)	245, 605
PaeI	GCATGC	2 cut(s)	245, 605
PasI	CCCWGGG	1 cut(s)	304
PciSI	GCTCTTC	1 cut(s)	1849
PdmI	GAANNNNTTC	1 cut(s)	2045
PfeI	GAWTC	6 cut(s)	582, 1352, 1550, 1697, 1793, 2132
PflMI	CCANNNNNTGG	2 cut(s)	1956, 2105
PkrI	GCNGC	7 cut(s)	354, 642, 822, 1197, 1474, 2030, 2143
PleI	GAGTC	3 cut(s)	911, 1214, 1534
PluTI	GGCGCC	1 cut(s)	727
PmaCI	CACGTG	1 cut(s)	275
PmlI	CACGTG	1 cut(s)	275
PpsI	GAGTC	3 cut(s)	911, 1214, 1534
Ppu21I	YACGTR	1 cut(s)	275
PpuMI	RGGWCCY	1 cut(s)	1891
Psp5II	RGGWCCY	1 cut(s)	1891
Psp6I	CCWGG	4 cut(s)	205, 303, 1129, 1230
PspCI	CACGTG	1 cut(s)	275
PspGI	CCWGG	4 cut(s)	205, 303, 1129, 1230
PspN4I	GGNNCC	3 cut(s)	256, 725, 1227
PspPI	GGNCC	4 cut(s)	254, 1165, 1500, 1891
PspPPI	RGGWCCY	1 cut(s)	1891
PstI	CTGCAG	1 cut(s)	2030
PstNI	CAGNNNCTG	1 cut(s)	470
PsuI	RGATCY	3 cut(s)	496, 1315, 1943
PvuII	CAGCTG	1 cut(s)	322
RsaI	GTAC	3 cut(s)	526, 571, 1007
RsaNI	GTAC	3 cut(s)	525, 570, 1006
RseI	CAYNNNNRTG	6 cut(s)	246, 606, 681, 1132, 1646, 1994
SapI	GCTCTTC	1 cut(s)	1849
SaqAI	TTAA	5 cut(s)	228, 402, 1050, 1452, 1899
SatI	GCNGC	7 cut(s)	353, 641, 821, 1196, 1473, 2029, 2142
Sau3AI	GATC	9 cut(s)	472, 496, 670, 977, 1315, 1733, 1738, 1781, 1943
Sau96I	GGNCC	4 cut(s)	254, 1165, 1500, 1891
SchI	GAGTC	3 cut(s)	912, 1215, 1535
ScrFI	CCNGG	4 cut(s)	207, 305, 1131, 1232
SduI	GDGCHC	2 cut(s)	1230, 1285
SfaNI	GCATC	7 cut(s)	208, 338, 346, 775, 904, 926, 1681
SfcI	CTRYAG	3 cut(s)	1585, 1860, 2026
SfoI	GGCGCC	1 cut(s)	725
SinI	GGWCC	4 cut(s)	254, 1165, 1500, 1891
SmiMI	CAYNNNNRTG	6 cut(s)	246, 606, 681, 1132, 1646, 1994
SmlI	CTYRAG	1 cut(s)	1898
SmoI	CTYRAG	1 cut(s)	1898
SpeI	ACTAGT	1 cut(s)	658
SphI	GCATGC	2 cut(s)	245, 605
SsiI	CCGC	2 cut(s)	1195, 1279
SspDI	GGCGCC	1 cut(s)	723
SspMI	CTAG	7 cut(s)	33, 659, 720, 882, 908, 1469, 2129
StyD4I	CCNGG	4 cut(s)	205, 303, 1129, 1230
StyI	CCWWGG	5 cut(s)	647, 719, 1214, 1641, 2012
TaaI	ACNGT	4 cut(s)	529, 890, 1875, 2059
TaiI	ACGT	1 cut(s)	277
TaqI	TCGA	4 cut(s)	709, 976, 1393, 1507
TaqII	GACCGA	1 cut(s)	940
TatI	WGTACW	2 cut(s)	524, 569
TauI	GCSGC	1 cut(s)	1198
TfiI	GAWTC	6 cut(s)	582, 1352, 1550, 1697, 1793, 2132
Tru1I	TTAA	5 cut(s)	228, 402, 1050, 1452, 1899
Tru9I	TTAA	5 cut(s)	228, 402, 1050, 1452, 1899
TscAI	CASTG	6 cut(s)	630, 1099, 1332, 1579, 1978, 2064
TseFI	GTSAC	5 cut(s)	262, 884, 1022, 1757, 2079
TseI	GCWGC	6 cut(s)	352, 640, 820, 1472, 2028, 2141
Tsp45I	GTSAC	5 cut(s)	262, 884, 1022, 1757, 2079
TspDTI	ATGAA	9 cut(s)	58, 354, 525, 699, 1191, 1626, 1674, 1820, 2038
TspGWI	ACGGA	2 cut(s)	125, 693
TspRI	CASTG	6 cut(s)	630, 1099, 1332, 1579, 1978, 2064
Van91I	CCANNNNNTGG	2 cut(s)	1956, 2105
Vha464I	CTTAAG	1 cut(s)	1898
VpaK11BI	GGWCC	4 cut(s)	254, 1165, 1500, 1891
XapI	RAATTY	6 cut(s)	77, 384, 513, 1141, 1599, 1809
XbaI	TCTAGA	1 cut(s)	32
XceI	RCATGY	2 cut(s)	245, 605
XmaJI	CCTAGG	1 cut(s)	719
XmiI	GTMKAC	1 cut(s)	1968
XmnI	GAANNNNTTC	1 cut(s)	2045
XspI	CTAG	7 cut(s)	33, 659, 720, 882, 908, 1469, 2129
Zsp2I	ATGCAT	2 cut(s)	339, 897

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.