Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0008819

Physical Location & Seq

Genomic Coordinates Reverse (-)

30773417 .. 30782247

Gene Structure 8831 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00239870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2028 bp

ATGGCGCTCTCGGCTTCAAATCATCCCTCAGGAGTTGCCCGTCCAGGGACAAGTGATGCTTTGTTTAAGGAGCTATGGCATGCTTGTGCTGGACCCCTTGTCACCCTGCCACGTGAAGGGGAGCGAGTTTATTACTTTCCCCAGGGACACATGGAACAGCTGGAGGCGTCAATGCATCAGATGTCAGAGCAGCAAATGCCTTCATTCAATCTGCCATCCAAAATTTTATGTAAAGTTGTTAATGTTCAGCTTCGGGCTGAACCAGAAACCGACGAAGTTTATGCGCAAGTTACTCTGCTACCAGAAACTGATCAAAGTGATGTAACAAGCCCAGATCCTCCTCTCCCAGAAATTCCACGCTGTACAGTCCATTCATTTTGCAAGACACTTACTGCTTCTGACACAAGCACACATGGGGGATTCTCTGTCCTTCGGAGGCATGCTGATGATTGTCTGCCACCACTGGATATGTCTCAGCAGCCTCCTTGGCAAGAACTAGTTGCAACTGATCTGCACGGAAATGAATGGCATTTTCGGCATATATTTCGAGGGCAACCTAGGCGCCACTTACTCACAACTGGGTGGAGTGTTTTTGTTAGTTCCAAAAAATTAGTAGCTGGTGATGCGTTTATATTCCTAAGAGGTGAGACTGGGGAGCTGCGTGTCGGTGTCAGGAGACTGATGAGACAACCAAGCAATATGCCATCTTCTGTCATTTCTAGTCACAGCATGCATCTTGGAGTCCTAGCTACTGCATCTCATGCCATTGCAACTGGGACACTATTTTCGGTCTTCTACAAGCCAAGAACAAGTCGATCTGAGTTCCTTGTTAGTGTCAACAAGTACCTGGAAGCTCGCAGTCACAAACTCTCTGTTGGGATGAGGTTTAAGATGAGATTTGAGGGTGAGGAAGTTCCTGAAAGAAGGTTCAGTGGCACGATTGTTGGTGTTGGGGATAATACATCACCTGGATGGGCAAATTCTGAGTGGCGATCTCTAAAGGTCCAATGGGATGAACCCTCATCTATATTGCGGCCAGATAGAGTCTCACCTTGGGAATTGGACCCCCTGGTAGCAACTACTCCACTAAACTCCCAACCTGCACTTAGAAACAAGCGGGCACGACCTCCTGTTTTACCTTCCTCATCCCCAGATCTTTCTGCACTGGGTGAGTGGAAATCCCAAGTAGAATCTCCTTCGGCTTTCTCATATAATGACCCACAGCGTGGTCGGGACCTTTATCCATCACCCAAGTATAGTTCTGCTTCAAAAGCCAATTCTCTTTGTTTTAAGGGCAATAATTCTCTAGCTGCTGTTTCTGCGAACCCAATCTTTTGGTCCAATCGAGTTGAAGCCGTTACGGAGTCTTTTTCACCTGTTAAGAGAGATTCGGTGGAAAGGAGACAAAGCACTGGGAATGGCTATAGGCTGTTTGGAATTCAGTTGCTTGATAACTCTAATGTAGAAGAGACTTCACCCATGGTAGTGTCTGGAAAGCTGGGGGATGTTCAACCAATTTCTTCATTGGATGCTGAATCTGACCAACACTCAGAACCATCAAATGTCAACCGATCTGATCTTCCTTCAGGAAGTTGTGACGCTGAAAAATCATCCCTCAGATCACCTCAGGAATCGCAAAGCAGGCAAATTCGGAGTTGCACAAAGGTTCATATGCAAGGGATTGCAGTAGGAAGAGCTGTAGATCTAGCACGGTTTGAGGGATATGAGGACCTGCTTAAGAAACTGGAAGATATGTTTGATATTGAAGGCGAGCTGAGTGGATCTACCAAGAAATGGCAAGTTGTCTACACTGATGATGAGGATGACATGATGATGGTTGGGGATGACCCATGGCATGAGTTCTGCAGCATGGTAAGGAAGATTTTCATCTATACAGTGGAGGAAGTGAAGAGGCTGTCACCCAAGATAAAACTTCCAGTTAGTGGAGAGGCTAAACTAGGCAAGCCAGATTCTGAAGCAGCTATCAATGCAGAAGACGGGTCATCTATTGTGGGGACGGCATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007568 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009889 GO:0009890 GO:0009892 GO:0010033 GO:0010150 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0042221 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048366 GO:0048367 GO:0048519 GO:0048523 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0090693 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA Auxin_resp B3

Protein Analysis

675

Amino Acids

74.91

Weight (kDa)

6.03

Isoelectric Point (pI)

58.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	126 - 226	7.5e-22	B3 DNA binding domain
BRWD_AD	PF25313	252 - 357	4.6e-08	BRWD/PHIP ancillary domain-like domain
ARF_AD	PF06507	275 - 357	6e-33	Auxin response factor ancillary domain
AUX_IAA	PF02309	543 - 587	5.5e-06	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008819)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G59750 AT1G59750 AT1G59750 AT1G59750
fragaria_vesca	FvH4_5g27860 FvH4_5g27860 FvH4_5g27860 FvH4_5g27860 FvH4_5g27860
malus_domestica	MD08G1247700.v1.1
prunus_persica	Prupe.1G585200_v2.0.a1 Prupe.1G585200_v2.0.a1
pyrus_communis	pycom08g21460
rosa_chinensis	RchiOBHm_Chr7g0219771
rosa_laevigata	RLG00000002269
rosa_multiflora	Rmu_sc0005014.1_g000017
rosa_roxburghii	Rroxscaffold_3G00239870
rosa_rugosa	Rorug07G0187800 Rorug07G0187900
rosa_samantha	Rh7AG331600 Rh7BG321200 Rh7CG349000
rosa_wichuraiana	Rw7G027920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	285
Acc36I	ACCTGC	2 cut(s)	1108, 1740
AccB1I	GGYRCC	1 cut(s)	561
AccB7I	CCANNNNNTGG	3 cut(s)	1226, 1794, 1943
AccI	GTMKAC	1 cut(s)	1806
AciI	CCGC	2 cut(s)	1033, 1117
AclWI	GGATC	2 cut(s)	329, 1789
AcoI	YGGCCR	1 cut(s)	1034
AcsI	RAATTY	5 cut(s)	222, 351, 979, 1437, 1647
AcuI	CTGAAG	2 cut(s)	1569, 1995
AcvI	CACGTG	1 cut(s)	113
AcyI	GRCGYC	2 cut(s)	167, 562
AdeI	CACNNNGTG	2 cut(s)	1169, 1226
AfaI	GTAC	2 cut(s)	364, 845
AfiI	CCNNNNNNNGG	5 cut(s)	45, 116, 1226, 1794, 1943
AflII	CTTAAG	1 cut(s)	1736
AgsI	TTSAA	6 cut(s)	18, 208, 1269, 1352, 1511, 1766
AhdI	GACNNNNNGTC	1 cut(s)	98
AhlI	ACTAGT	1 cut(s)	496
AjnI	CCWGG	5 cut(s)	43, 141, 846, 967, 1068
Alw26I	GTCTC	7 cut(s)	477, 641, 670, 679, 1051, 1396, 1463
AlwI	GGATC	2 cut(s)	329, 1789
AlwNI	CAGNNNCTG	2 cut(s)	308, 1973
AoxI	GGCC	1 cut(s)	1034
ApeKI	GCWGC	6 cut(s)	190, 478, 658, 1310, 1866, 1979
ApoI	RAATTY	5 cut(s)	222, 351, 979, 1437, 1647
ArsI	GACNNNNNNTTYG	2 cut(s)	769, 801
Asp700I	GAANNNNTTC	1 cut(s)	1883
AspA2I	CCTAGG	1 cut(s)	557
AspLEI	GCGC	3 cut(s)	7, 286, 564
AspS9I	GGNCC	6 cut(s)	92, 1003, 1063, 1234, 1338, 1729
AvaII	GGWCC	6 cut(s)	92, 1003, 1063, 1234, 1338, 1729
AvrII	CCTAGG	1 cut(s)	557
AxyI	CCTNAGG	2 cut(s)	28, 1626
BaeGI	GKGCMC	1 cut(s)	1123
BanI	GGYRCC	1 cut(s)	561
BbrPI	CACGTG	1 cut(s)	113
BbsI	GAAGAC	2 cut(s)	784, 2001
BbvI	GCAGC	6 cut(s)	202, 490, 645, 1297, 1878, 1991
BccI	CCATC	6 cut(s)	223, 712, 966, 1252, 1564, 1828
BceAI	ACGGC	1 cut(s)	1340
BcgI	CGANNNNNNTGC	4 cut(s)	263, 297, 527, 561
BciT130I	CCWGG	5 cut(s)	45, 143, 848, 969, 1070
BclI	TGATCA	1 cut(s)	310
BcoDI	GTCTC	7 cut(s)	477, 641, 670, 679, 1051, 1396, 1463
BcuI	ACTAGT	1 cut(s)	496
BfaI	CTAG	7 cut(s)	497, 558, 720, 746, 1307, 1706, 1958
BfmI	CTRYAG	3 cut(s)	1423, 1698, 1864
BfoI	RGCGCY	2 cut(s)	8, 565
BfrI	CTTAAG	1 cut(s)	1736
BfuAI	ACCTGC	2 cut(s)	1108, 1740
BglI	GCCNNNNNGGC	1 cut(s)	487
BglII	AGATCT	2 cut(s)	1153, 1702
BisI	GCNGC	7 cut(s)	191, 479, 659, 1034, 1311, 1867, 1980
BlnI	CCTAGG	1 cut(s)	557
BlsI	GCNGC	7 cut(s)	192, 480, 660, 1035, 1312, 1868, 1981
Bme1390I	CCNGG	5 cut(s)	45, 143, 848, 969, 1070
Bme18I	GGWCC	6 cut(s)	92, 1003, 1063, 1234, 1338, 1729
BmeRI	GACNNNNNGTC	1 cut(s)	98
BmgT120I	GGNCC	6 cut(s)	92, 1003, 1063, 1234, 1338, 1729
BmiI	GGNNCC	4 cut(s)	94, 563, 1065, 1235
BmrFI	CCNGG	5 cut(s)	45, 143, 848, 969, 1070
BmrI	ACTGGG	5 cut(s)	588, 660, 783, 1175, 1422
BmsI	GCATC	6 cut(s)	46, 184, 613, 742, 764, 1519
BmuI	ACTGGG	5 cut(s)	588, 660, 783, 1175, 1422
BpiI	GAAGAC	2 cut(s)	784, 2001
BpmI	CTGGAG	1 cut(s)	182
BsaAI	YACGTR	1 cut(s)	113
BsaBI	GATNNNNATC	1 cut(s)	1886
BsaHI	GRCGYC	2 cut(s)	167, 562
BsaJI	CCNNGG	9 cut(s)	44, 141, 142, 485, 557, 1052, 1068, 1479, 1850
Bsc4I	CCNNNNNNNGG	5 cut(s)	45, 116, 1226, 1794, 1943
Bse1I	ACTGG	8 cut(s)	468, 583, 655, 778, 1170, 1417, 1749, 1937
Bse21I	CCTNAGG	2 cut(s)	28, 1626
Bse3DI	GCAATG	1 cut(s)	765
Bse8I	GATNNNNATC	1 cut(s)	1886
BseBI	CCWGG	5 cut(s)	45, 143, 848, 969, 1070
BseDI	CCNNGG	9 cut(s)	44, 141, 142, 485, 557, 1052, 1068, 1479, 1850
BseJI	GATNNNNATC	1 cut(s)	1886
BseLI	CCNNNNNNNGG	5 cut(s)	45, 116, 1226, 1794, 1943
BseMI	GCAATG	1 cut(s)	765
BseMII	CTCAG	8 cut(s)	42, 488, 810, 975, 1563, 1630, 1640, 1766
BseNI	ACTGG	8 cut(s)	468, 583, 655, 778, 1170, 1417, 1749, 1937
BseRI	GAGGAG	1 cut(s)	330
BseSI	GKGCMC	1 cut(s)	1123
BseXI	GCAGC	6 cut(s)	202, 490, 645, 1297, 1878, 1991
BseYI	CCCAGC	1 cut(s)	1498
BsgI	GTGCAG	3 cut(s)	497, 1086, 1146
BshFI	GGCC	1 cut(s)	1036
BshNI	GGYRCC	1 cut(s)	561
BslFI	GGGAC	4 cut(s)	61, 159, 790, 1247
BslI	CCNNNNNNNGG	5 cut(s)	45, 116, 1226, 1794, 1943
BsmAI	GTCTC	7 cut(s)	477, 641, 670, 679, 1051, 1396, 1463
BsmFI	GGGAC	4 cut(s)	61, 159, 790, 1247
BsnI	GGCC	1 cut(s)	1036
Bsp1286I	GDGCHC	1 cut(s)	1123
Bsp1407I	TGTACA	1 cut(s)	362
Bsp19I	CCATGG	2 cut(s)	1479, 1850
BspACI	CCGC	2 cut(s)	1033, 1117
BspANI	GGCC	1 cut(s)	1036
BspCNI	CTCAG	8 cut(s)	41, 487, 811, 976, 1562, 1629, 1639, 1767
BspLI	GGNNCC	4 cut(s)	94, 563, 1065, 1235
BspMAI	CTGCAG	1 cut(s)	1868
BspMI	ACCTGC	2 cut(s)	1108, 1740
BspPI	GGATC	2 cut(s)	329, 1789
BspQI	GCTCTTC	1 cut(s)	1687
BspT107I	GGYRCC	1 cut(s)	561
BspTI	CTTAAG	1 cut(s)	1736
BsrDI	GCAATG	1 cut(s)	765
BsrGI	TGTACA	1 cut(s)	362
BsrI	ACTGG	8 cut(s)	468, 583, 655, 778, 1170, 1417, 1749, 1937
BssECI	CCNNGG	9 cut(s)	44, 141, 142, 485, 557, 1052, 1068, 1479, 1850
BssNI	GRCGYC	2 cut(s)	167, 562
BssT1I	CCWWGG	5 cut(s)	485, 557, 1052, 1479, 1850
Bst2UI	CCWGG	5 cut(s)	45, 143, 848, 969, 1070
Bst4CI	ACNGT	3 cut(s)	367, 1713, 1897
Bst6I	CTCTTC	3 cut(s)	1461, 1687, 1904
BstACI	GRCGYC	2 cut(s)	167, 562
BstAFI	CTTAAG	1 cut(s)	1736
BstAPI	GCANNNNNTGC	2 cut(s)	196, 761
BstAUI	TGTACA	1 cut(s)	362
BstBAI	YACGTR	1 cut(s)	113
BstC8I	GCNNGC	8 cut(s)	81, 441, 731, 856, 1119, 1643, 1772, 1964
BstDSI	CCRYGG	2 cut(s)	1479, 1850
BstH2I	RGCGCY	2 cut(s)	8, 565
BstHHI	GCGC	3 cut(s)	7, 286, 564
BstMAI	GTCTC	7 cut(s)	477, 641, 670, 679, 1051, 1396, 1463
BstNI	CCWGG	5 cut(s)	45, 143, 848, 969, 1070
BstNSI	RCATGY	3 cut(s)	83, 443, 733
BstSCI	CCNGG	5 cut(s)	43, 141, 846, 967, 1068
BstSFI	CTRYAG	3 cut(s)	1423, 1698, 1864
BstSLI	GKGCMC	1 cut(s)	1123
BstV1I	GCAGC	6 cut(s)	202, 490, 645, 1297, 1878, 1991
BstV2I	GAAGAC	2 cut(s)	784, 2001
BstX2I	RGATCY	4 cut(s)	334, 1153, 1702, 1781
BstXI	CCANNNNNNTGG	1 cut(s)	1335
BstYI	RGATCY	4 cut(s)	334, 1153, 1702, 1781
Bsu36I	CCTNAGG	2 cut(s)	28, 1626
BsuRI	GGCC	1 cut(s)	1036
BtgI	CCRYGG	2 cut(s)	1479, 1850
BtsIMutI	CAGTG	6 cut(s)	461, 937, 1163, 1410, 1809, 1902
BveI	ACCTGC	2 cut(s)	1108, 1740
Cac8I	GCNNGC	8 cut(s)	81, 441, 731, 856, 1119, 1643, 1772, 1964
CaiI	CAGNNNCTG	2 cut(s)	308, 1973
CfoI	GCGC	3 cut(s)	7, 286, 564
Cfr13I	GGNCC	6 cut(s)	92, 1003, 1063, 1234, 1338, 1729
CseI	GACGC	2 cut(s)	156, 1607
Csp6I	GTAC	2 cut(s)	363, 844
CviQI	GTAC	2 cut(s)	363, 844
DinI	GGCGCC	1 cut(s)	563
DraIII	CACNNNGTG	2 cut(s)	1169, 1226
DriI	GACNNNNNGTC	1 cut(s)	98
EaeI	YGGCCR	1 cut(s)	1034
Eam1104I	CTCTTC	3 cut(s)	1461, 1687, 1904
Eam1105I	GACNNNNNGTC	1 cut(s)	98
EarI	CTCTTC	3 cut(s)	1461, 1687, 1904
Eco130I	CCWWGG	5 cut(s)	485, 557, 1052, 1479, 1850
Eco47I	GGWCC	6 cut(s)	92, 1003, 1063, 1234, 1338, 1729
Eco57I	CTGAAG	2 cut(s)	1569, 1995
Eco72I	CACGTG	1 cut(s)	113
Eco81I	CCTNAGG	2 cut(s)	28, 1626
EcoO109I	RGGNCCY	2 cut(s)	1234, 1729
EcoRI	GAATTC	1 cut(s)	1437
EcoRII	CCWGG	5 cut(s)	43, 141, 846, 967, 1068
EcoT14I	CCWWGG	5 cut(s)	485, 557, 1052, 1479, 1850
EcoT22I	ATGCAT	2 cut(s)	177, 735
EgeI	GGCGCC	1 cut(s)	563
EheI	GGCGCC	1 cut(s)	563
ErhI	CCWWGG	5 cut(s)	485, 557, 1052, 1479, 1850
FalI	AAGNNNNNCTT	2 cut(s)	43, 75
FaqI	GGGAC	4 cut(s)	61, 159, 790, 1247
FauI	CCCGC	1 cut(s)	1110
FauNDI	CATATG	1 cut(s)	1671
FbaI	TGATCA	1 cut(s)	310
FblI	GTMKAC	1 cut(s)	1806
Fnu4HI	GCNGC	7 cut(s)	191, 479, 659, 1034, 1311, 1867, 1980
Fsp4HI	GCNGC	7 cut(s)	191, 479, 659, 1034, 1311, 1867, 1980
FspBI	CTAG	7 cut(s)	497, 558, 720, 746, 1307, 1706, 1958
FspI	TGCGCA	1 cut(s)	285
GlaI	GCGC	3 cut(s)	6, 285, 563
GluI	GCNGC	7 cut(s)	191, 479, 659, 1034, 1311, 1867, 1980
GsaI	CCCAGC	1 cut(s)	1502
GsuI	CTGGAG	1 cut(s)	182
HaeII	RGCGCY	2 cut(s)	8, 565
HaeIII	GGCC	1 cut(s)	1036
HgaI	GACGC	2 cut(s)	156, 1607
HhaI	GCGC	3 cut(s)	7, 286, 564
Hin1I	GRCGYC	2 cut(s)	167, 562
Hin6I	GCGC	3 cut(s)	5, 284, 562
HinP1I	GCGC	3 cut(s)	5, 284, 562
HincII	GTYRAC	2 cut(s)	838, 1567
HindII	GTYRAC	2 cut(s)	838, 1567
HinfI	GANTC	9 cut(s)	420, 741, 1044, 1190, 1364, 1388, 1535, 1631, 1970
Hpy166II	GTNNAC	3 cut(s)	838, 1567, 1807
Hpy188III	TCNNGA	7 cut(s)	30, 673, 917, 1232, 1491, 1587, 1628
Hpy8I	GTNNAC	3 cut(s)	838, 1567, 1807
Hpy99I	CGWCG	1 cut(s)	275
HpyAV	CCTTC	8 cut(s)	110, 210, 440, 918, 1149, 1206, 1593, 1760
HpyCH4III	ACNGT	3 cut(s)	367, 1713, 1897
HpyCH4IV	ACGT	1 cut(s)	112
HpySE526I	ACGT	1 cut(s)	112
Hsp92I	GRCGYC	2 cut(s)	167, 562
HspAI	GCGC	3 cut(s)	5, 284, 562
KasI	GGCGCC	1 cut(s)	561
Ksp22I	TGATCA	1 cut(s)	310
LguI	GCTCTTC	1 cut(s)	1687
LmnI	GCTCC	3 cut(s)	70, 121, 655
Lsp1109I	GCAGC	6 cut(s)	202, 490, 645, 1297, 1878, 1991
LweI	GCATC	6 cut(s)	46, 184, 613, 742, 764, 1519
MaeI	CTAG	7 cut(s)	497, 558, 720, 746, 1307, 1706, 1958
MaeII	ACGT	1 cut(s)	112
MaeIII	GTNAC	8 cut(s)	100, 289, 322, 722, 860, 1357, 1595, 1917
MflI	RGATCY	4 cut(s)	334, 1153, 1702, 1781
MhlI	GDGCHC	1 cut(s)	1123
Mly113I	GGCGCC	1 cut(s)	562
MlyI	GAGTC	3 cut(s)	750, 1053, 1373
Mph1103I	ATGCAT	2 cut(s)	177, 735
MroXI	GAANNNNTTC	1 cut(s)	1883
MseI	TTAA	6 cut(s)	66, 240, 888, 1290, 1380, 1737
MslI	CAYNNNNRTG	6 cut(s)	84, 444, 519, 970, 1484, 1832
MspA1I	CMGCKG	1 cut(s)	160
MspCI	CTTAAG	1 cut(s)	1736
MspR9I	CCNGG	5 cut(s)	45, 143, 848, 969, 1070
MvaI	CCWGG	5 cut(s)	45, 143, 848, 969, 1070
NarI	GGCGCC	1 cut(s)	562
NcoI	CCATGG	2 cut(s)	1479, 1850
NdeI	CATATG	1 cut(s)	1671
NlaIV	GGNNCC	4 cut(s)	94, 563, 1065, 1235
NmuCI	GTSAC	5 cut(s)	100, 722, 860, 1595, 1917
NsbI	TGCGCA	1 cut(s)	285
NsiI	ATGCAT	2 cut(s)	177, 735
NspI	RCATGY	3 cut(s)	83, 443, 733
PaeI	GCATGC	3 cut(s)	83, 443, 733
PasI	CCCWGGG	1 cut(s)	142
PciSI	GCTCTTC	1 cut(s)	1687
PdmI	GAANNNNTTC	1 cut(s)	1883
PfeI	GAWTC	6 cut(s)	420, 1190, 1388, 1535, 1631, 1970
PflMI	CCANNNNNTGG	3 cut(s)	1226, 1794, 1943
PkrI	GCNGC	7 cut(s)	192, 480, 660, 1035, 1312, 1868, 1981
PleI	GAGTC	3 cut(s)	749, 1052, 1372
PluTI	GGCGCC	1 cut(s)	565
PmaCI	CACGTG	1 cut(s)	113
PmlI	CACGTG	1 cut(s)	113
PpsI	GAGTC	3 cut(s)	749, 1052, 1372
Ppu21I	YACGTR	1 cut(s)	113
PpuMI	RGGWCCY	2 cut(s)	1234, 1729
Psp5II	RGGWCCY	2 cut(s)	1234, 1729
Psp6I	CCWGG	5 cut(s)	43, 141, 846, 967, 1068
PspCI	CACGTG	1 cut(s)	113
PspFI	CCCAGC	1 cut(s)	1498
PspGI	CCWGG	5 cut(s)	43, 141, 846, 967, 1068
PspN4I	GGNNCC	4 cut(s)	94, 563, 1065, 1235
PspPI	GGNCC	6 cut(s)	92, 1003, 1063, 1234, 1338, 1729
PspPPI	RGGWCCY	2 cut(s)	1234, 1729
PstI	CTGCAG	1 cut(s)	1868
PstNI	CAGNNNCTG	2 cut(s)	308, 1973
PsuI	RGATCY	4 cut(s)	334, 1153, 1702, 1781
PvuII	CAGCTG	1 cut(s)	160
RsaI	GTAC	2 cut(s)	364, 845
RsaNI	GTAC	2 cut(s)	363, 844
RseI	CAYNNNNRTG	6 cut(s)	84, 444, 519, 970, 1484, 1832
SapI	GCTCTTC	1 cut(s)	1687
SaqAI	TTAA	6 cut(s)	66, 240, 888, 1290, 1380, 1737
SatI	GCNGC	7 cut(s)	191, 479, 659, 1034, 1311, 1867, 1980
Sau96I	GGNCC	6 cut(s)	92, 1003, 1063, 1234, 1338, 1729
SchI	GAGTC	3 cut(s)	750, 1053, 1373
ScrFI	CCNGG	5 cut(s)	45, 143, 848, 969, 1070
SduI	GDGCHC	1 cut(s)	1123
SfaNI	GCATC	6 cut(s)	46, 184, 613, 742, 764, 1519
SfcI	CTRYAG	3 cut(s)	1423, 1698, 1864
SfoI	GGCGCC	1 cut(s)	563
SinI	GGWCC	6 cut(s)	92, 1003, 1063, 1234, 1338, 1729
SmiMI	CAYNNNNRTG	6 cut(s)	84, 444, 519, 970, 1484, 1832
SmlI	CTYRAG	1 cut(s)	1736
SmoI	CTYRAG	1 cut(s)	1736
SpeI	ACTAGT	1 cut(s)	496
SphI	GCATGC	3 cut(s)	83, 443, 733
SsiI	CCGC	2 cut(s)	1033, 1117
SspDI	GGCGCC	1 cut(s)	561
SspMI	CTAG	7 cut(s)	497, 558, 720, 746, 1307, 1706, 1958
StyD4I	CCNGG	5 cut(s)	43, 141, 846, 967, 1068
StyI	CCWWGG	5 cut(s)	485, 557, 1052, 1479, 1850
TaaI	ACNGT	3 cut(s)	367, 1713, 1897
TaiI	ACGT	1 cut(s)	115
TaqI	TCGA	3 cut(s)	547, 814, 1345
TaqII	GACCGA	1 cut(s)	778
TatI	WGTACW	1 cut(s)	362
TauI	GCSGC	1 cut(s)	1036
TfiI	GAWTC	6 cut(s)	420, 1190, 1388, 1535, 1631, 1970
Tru1I	TTAA	6 cut(s)	66, 240, 888, 1290, 1380, 1737
Tru9I	TTAA	6 cut(s)	66, 240, 888, 1290, 1380, 1737
TscAI	CASTG	6 cut(s)	468, 937, 1170, 1417, 1816, 1902
TseFI	GTSAC	5 cut(s)	100, 722, 860, 1595, 1917
TseI	GCWGC	6 cut(s)	190, 478, 658, 1310, 1866, 1979
Tsp45I	GTSAC	5 cut(s)	100, 722, 860, 1595, 1917
TspDTI	ATGAA	7 cut(s)	192, 363, 537, 1029, 1512, 1658, 1876
TspGWI	ACGGA	2 cut(s)	531, 1376
TspRI	CASTG	6 cut(s)	468, 937, 1170, 1417, 1816, 1902
Van91I	CCANNNNNTGG	3 cut(s)	1226, 1794, 1943
Vha464I	CTTAAG	1 cut(s)	1736
VpaK11BI	GGWCC	6 cut(s)	92, 1003, 1063, 1234, 1338, 1729
XapI	RAATTY	5 cut(s)	222, 351, 979, 1437, 1647
XceI	RCATGY	3 cut(s)	83, 443, 733
XmaJI	CCTAGG	1 cut(s)	557
XmiI	GTMKAC	1 cut(s)	1806
XmnI	GAANNNNTTC	1 cut(s)	1883
XspI	CTAG	7 cut(s)	497, 558, 720, 746, 1307, 1706, 1958
Zsp2I	ATGCAT	2 cut(s)	177, 735

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.