MD09G1259200.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0018100
Physical Location & Seq
Reverse (-)
33181852 .. 33183164
1313 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1259200.v1.1.491

Sequence Viewer

Length: 399 bp
ATGGCGAAGCCTTTTTCTCTACCTTCTCTGTGCAATTTTGTACAGCCATCTACGATCAAGAGCCGCTGTAGTACTCGTCTTCATATGACCATGCAAGTAAAAGCTCAGAGCTTAGATGAAGGTAGATCAAGGAATATTGTGGATTCAAATTTGAGCGTTTTAAGAGAGAAGATGGCAGTCGTTAAGATGAGGGAGAGACTTGAGAAATATTGCTGCAAACATCAACAAAATGGATGGAATTATTCACCGGGATATAATTACAAACTCAGAAGAGCAAGAGAGGTATCGACGTTCTTTGAGCTCATACGTTTGGTGGGCGTGACTCTTGGTTTTACCTGTTTTACTGCTACATTCTTCCTTGTCCTTGTATCAATCTTGGTTCGTTTGAATCAATGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

133

Amino Acids

15.36

Weight (kDa)

10.04

Isoelectric Point (pI)

45.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018100)

Species Orthologous Gene IDs
malus_domestica MD09G1259200.v1.1 MD09G1259400.v1.1
prunus_persica Prupe.3G151000_v2.0.a1
pyrus_communis pycom09g17410
rosa_laevigata RLG00000022699
rosa_roxburghii Rroxscaffold_6G00391400
rosa_rugosa Rorug03G0263300
rosa_samantha Rh3AG312100 Rh3BG348000 Rh3DG348200
rosa_wichuraiana Rw3G027380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 64
AcsI RAATTY 1 cut(s) 148
AfaI GTAC 2 cut(s) 42, 73
AgsI TTSAA 2 cut(s) 147, 388
AluBI AGCT 3 cut(s) 104, 111, 301
AluI AGCT 3 cut(s) 104, 111, 301
Alw21I GWGCWC 1 cut(s) 303
Alw26I GTCTC 1 cut(s) 190
ApeKI GCWGC 1 cut(s) 213
ApoI RAATTY 1 cut(s) 148
AsuC2I CCSGG 1 cut(s) 249
AsuHPI GGTGA 1 cut(s) 237
BanII GRGCYC 1 cut(s) 303
BbsI GAAGAC 1 cut(s) 71
Bbv12I GWGCWC 1 cut(s) 303
BbvI GCAGC 1 cut(s) 200
BccI CCATC 3 cut(s) 55, 166, 228
BcnI CCSGG 1 cut(s) 249
BcoDI GTCTC 1 cut(s) 190
BfmI CTRYAG 1 cut(s) 67
BisI GCNGC 2 cut(s) 64, 214
BlsI GCNGC 2 cut(s) 65, 215
BmcAI AGTACT 1 cut(s) 73
Bme1390I CCNGG 1 cut(s) 249
BmrFI CCNGG 1 cut(s) 249
BpiI GAAGAC 1 cut(s) 71
BpuEI CTTGAG 1 cut(s) 221
BpuMI CCSGG 1 cut(s) 249
BseGI GGATG 1 cut(s) 239
BseMII CTCAG 2 cut(s) 119, 280
BseXI GCAGC 1 cut(s) 200
BsiHKAI GWGCWC 1 cut(s) 303
BsiSI CCGG 1 cut(s) 248
BsmAI GTCTC 1 cut(s) 190
Bsp1286I GDGCHC 1 cut(s) 303
Bsp1407I TGTACA 1 cut(s) 40
Bsp143I GATC 2 cut(s) 54, 125
BspACI CCGC 1 cut(s) 64
BspCNI CTCAG 2 cut(s) 118, 279
BspQI GCTCTTC 1 cut(s) 265
BsrGI TGTACA 1 cut(s) 40
BssMI GATC 2 cut(s) 54, 125
Bst6I CTCTTC 1 cut(s) 265
BstAUI TGTACA 1 cut(s) 40
BstDEI CTNAG 3 cut(s) 105, 112, 266
BstF5I GGATG 1 cut(s) 239
BstKTI GATC 2 cut(s) 57, 128
BstMAI GTCTC 1 cut(s) 190
BstMBI GATC 2 cut(s) 54, 125
BstSCI CCNGG 1 cut(s) 247
BstSFI CTRYAG 1 cut(s) 67
BstV1I GCAGC 1 cut(s) 200
BstV2I GAAGAC 1 cut(s) 71
BtsCI GGATG 1 cut(s) 239
Csp6I GTAC 2 cut(s) 41, 72
CviAII CATG 1 cut(s) 91
CviJI RGCY 6 cut(s) 10, 46, 63, 104, 111, 301
CviKI_1 RGCY 6 cut(s) 10, 46, 63, 104, 111, 301
CviQI GTAC 2 cut(s) 41, 72
DdeI CTNAG 3 cut(s) 105, 112, 266
DpnI GATC 2 cut(s) 56, 127
DpnII GATC 2 cut(s) 54, 125
Eam1104I CTCTTC 1 cut(s) 265
EarI CTCTTC 1 cut(s) 265
Ecl136II GAGCTC 1 cut(s) 301
Eco24I GRGCYC 1 cut(s) 303
Eco53kI GAGCTC 1 cut(s) 301
EcoICRI GAGCTC 1 cut(s) 301
EcoT38I GRGCYC 1 cut(s) 303
FaeI CATG 1 cut(s) 94
FaiI YATR 5 cut(s) 84, 86, 92, 255, 305
FatI CATG 1 cut(s) 90
FauNDI CATATG 1 cut(s) 84
Fnu4HI GCNGC 2 cut(s) 64, 214
FokI GGATG 1 cut(s) 246
FriOI GRGCYC 1 cut(s) 303
Fsp4HI GCNGC 2 cut(s) 64, 214
GluI GCNGC 2 cut(s) 64, 214
HapII CCGG 1 cut(s) 248
Hin1II CATG 1 cut(s) 94
HinfI GANTC 3 cut(s) 143, 322, 388
HpaII CCGG 1 cut(s) 248
HphI GGTGA 1 cut(s) 237
Hpy188I TCNGA 2 cut(s) 108, 269
Hpy188III TCNNGA 1 cut(s) 58
Hpy99I CGWCG 1 cut(s) 292
HpyAV CCTTC 2 cut(s) 33, 113
HpyCH4IV ACGT 2 cut(s) 290, 307
HpyCH4V TGCA 3 cut(s) 33, 94, 216
HpyF3I CTNAG 3 cut(s) 105, 112, 266
HpySE526I ACGT 2 cut(s) 290, 307
Hsp92II CATG 1 cut(s) 94
Kzo9I GATC 2 cut(s) 54, 125
LguI GCTCTTC 1 cut(s) 265
LpnPI CCDG 2 cut(s) 261, 349
Lsp1109I GCAGC 1 cut(s) 200
MaeII ACGT 2 cut(s) 290, 307
MaeIII GTNAC 1 cut(s) 319
MalI GATC 2 cut(s) 56, 127
MboI GATC 2 cut(s) 54, 125
MboII GAAGA 4 cut(s) 71, 181, 282, 346
MhlI GDGCHC 1 cut(s) 303
MluCI AATT 4 cut(s) 34, 148, 238, 256
MlyI GAGTC 1 cut(s) 316
MnlI CCTC 2 cut(s) 183, 274
MseI TTAA 2 cut(s) 161, 183
MspA1I CMGCKG 1 cut(s) 66
MspI CCGG 1 cut(s) 248
MspR9I CCNGG 1 cut(s) 249
NciI CCSGG 1 cut(s) 249
NdeI CATATG 1 cut(s) 84
NdeII GATC 2 cut(s) 54, 125
NlaIII CATG 1 cut(s) 94
NmuCI GTSAC 1 cut(s) 319
PciSI GCTCTTC 1 cut(s) 265
PfeI GAWTC 2 cut(s) 143, 388
PkrI GCNGC 2 cut(s) 65, 215
PleI GAGTC 1 cut(s) 316
PpsI GAGTC 1 cut(s) 316
Psp124BI GAGCTC 1 cut(s) 303
RsaI GTAC 2 cut(s) 42, 73
RsaNI GTAC 2 cut(s) 41, 72
SacI GAGCTC 1 cut(s) 303
SapI GCTCTTC 1 cut(s) 265
SaqAI TTAA 2 cut(s) 161, 183
SatI GCNGC 2 cut(s) 64, 214
Sau3AI GATC 2 cut(s) 54, 125
ScaI AGTACT 1 cut(s) 73
SchI GAGTC 1 cut(s) 316
ScrFI CCNGG 1 cut(s) 249
SduI GDGCHC 1 cut(s) 303
SetI ASST 9 cut(s) 25, 106, 113, 124, 285, 293, 303, 310, 338
SfcI CTRYAG 1 cut(s) 67
SmlI CTYRAG 1 cut(s) 200
SmoI CTYRAG 1 cut(s) 200
Sse9I AATT 4 cut(s) 34, 148, 238, 256
SsiI CCGC 1 cut(s) 64
SspI AATATT 2 cut(s) 136, 209
SstI GAGCTC 1 cut(s) 303
StyD4I CCNGG 1 cut(s) 247
TaiI ACGT 2 cut(s) 293, 310
TaqI TCGA 1 cut(s) 287
TasI AATT 4 cut(s) 34, 148, 238, 256
TatI WGTACW 2 cut(s) 40, 71
TauI GCSGC 1 cut(s) 66
TfiI GAWTC 2 cut(s) 143, 388
Tru1I TTAA 2 cut(s) 161, 183
Tru9I TTAA 2 cut(s) 161, 183
TseFI GTSAC 1 cut(s) 319
TseI GCWGC 1 cut(s) 213
Tsp45I GTSAC 1 cut(s) 319
TspDTI ATGAA 2 cut(s) 71, 132
XapI RAATTY 1 cut(s) 148
ZrmI AGTACT 1 cut(s) 73
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.