Rorug03G0263300

S-adenosyl-L-methionine-dependent protein-lysine N- methyltransferase that methylates elongation factor 1-alpha

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Reverse (-)
25499849 .. 25502093
2245 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0263300.1

Sequence Viewer

Length: 678 bp
ATGGCATCAACAATTGGTCGATTGTTTCAAGATCAGAACCTCAGTGTTCACTCTAATGGAGATTCTGCTGTTGGAAAGGGTGGTGCAAAACAACAGAAGAAAGCAGGGTTTGGTGGAAGGAAACCTCTAGGAGATGTATCGAATACAGGGAAGCCTGATTTTACCAAGGTGTCGAAAAAGCCTGCTCTTACCAATGTTTCTGAAATGATTGCTGATGCAAGCAATAAGAAAGGCCTTTGTAAAGCCTCAGATAAAGTGCAGACTCGTGGCAGCCGCAAGGCACTATCTGATGTGTCTAACACAGTCAAACCACCTGTGCACAAGAAGTCAAGTGTTGTGGCACAACCACCTTGTGGTTTTGAGGAAGAAGGATTCTTGCATGACCATCAACAGTGCATCAAATCTATGAGAAAGGCTAACCAAATGGATCAAATGGATTTTTCTATGATAATACAAGGATCACACTCATCCAAGAAGCTTCTATCTCCCTGTGCAGTTTCTCAGTTTCGTAAAGTTGAGCCGGAGAGTTCCATGAGGTACTTGGATTTGAAAGAGATGCCTGAGCTGTCTATCACGCTTGACTCTTCACCTCATTGCAAGTCTCCATTGTCACCAACTCATACCAAGTCCACTTGGATTTGGGATGATTGTGATTTTCAGGTGATGGAGACACCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

225

Amino Acids

24.61

Weight (kDa)

9.18

Isoelectric Point (pI)

31.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014371)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66680
fragaria_vesca FvH4_1g29040 FvH4_1g29040 FvH4_1g29040
malus_domestica MD09G1258900.v1.1 MD17G1253400.v1.1
prunus_persica Prupe.3G150900_v2.0.a1
pyrus_communis pycom09g17370
rosa_chinensis RchiOBHm_Chr3g0493661
rosa_laevigata RLG00000022698
rosa_multiflora Rmu_sc0000568.1_g000014
rosa_roxburghii Rroxscaffold_6G00391390
rosa_rugosa Rorug03G0263300
rosa_samantha Rh3AG312200 Rh3BG348100 Rh3CG345800
rosa_wichuraiana Rw3G027390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 353
AciI CCGC 1 cut(s) 274
AclWI GGATC 2 cut(s) 435, 466
AdeI CACNNNGTG 1 cut(s) 353
AfaI GTAC 1 cut(s) 539
AfiI CCNNNNNNNGG 1 cut(s) 353
AgsI TTSAA 2 cut(s) 29, 550
AluBI AGCT 2 cut(s) 478, 565
AluI AGCT 2 cut(s) 478, 565
Alw21I GWGCWC 1 cut(s) 321
Alw26I GTCTC 2 cut(s) 606, 662
Alw44I GTGCAC 1 cut(s) 317
AlwI GGATC 2 cut(s) 435, 466
AoxI GGCC 1 cut(s) 232
ApaLI GTGCAC 1 cut(s) 317
ApeKI GCWGC 1 cut(s) 270
AsuHPI GGTGA 3 cut(s) 579, 603, 673
BaeGI GKGCMC 1 cut(s) 321
BauI CACGAG 1 cut(s) 264
Bbv12I GWGCWC 1 cut(s) 321
BbvI GCAGC 1 cut(s) 282
BccI CCATC 2 cut(s) 393, 658
BcoDI GTCTC 2 cut(s) 606, 662
BfaI CTAG 1 cut(s) 128
BisI GCNGC 2 cut(s) 271, 274
BlsI GCNGC 2 cut(s) 272, 275
BmsI GCATC 4 cut(s) 14, 205, 405, 546
Bpu10I CCTNAGC 1 cut(s) 561
BsaJI CCNNGG 1 cut(s) 165
Bsc4I CCNNNNNNNGG 1 cut(s) 353
Bse3DI GCAATG 1 cut(s) 592
BseDI CCNNGG 1 cut(s) 165
BseGI GGATG 2 cut(s) 467, 649
BseLI CCNNNNNNNGG 1 cut(s) 353
BseMI GCAATG 1 cut(s) 592
BseMII CTCAG 4 cut(s) 55, 261, 515, 552
BseSI GKGCMC 1 cut(s) 321
BseXI GCAGC 1 cut(s) 282
BsgI GTGCAG 2 cut(s) 278, 513
BshFI GGCC 1 cut(s) 234
BsiHKAI GWGCWC 1 cut(s) 321
BsiSI CCGG 1 cut(s) 521
BslI CCNNNNNNNGG 1 cut(s) 353
BsmAI GTCTC 2 cut(s) 606, 662
BsnI GGCC 1 cut(s) 234
Bsp1286I GDGCHC 1 cut(s) 321
Bsp143I GATC 3 cut(s) 31, 427, 458
BspACI CCGC 1 cut(s) 274
BspANI GGCC 1 cut(s) 234
BspCNI CTCAG 4 cut(s) 54, 260, 514, 553
BspPI GGATC 2 cut(s) 435, 466
BsrDI GCAATG 1 cut(s) 592
BssECI CCNNGG 1 cut(s) 165
BssMI GATC 3 cut(s) 31, 427, 458
BssSI CACGAG 1 cut(s) 264
BssT1I CCWWGG 1 cut(s) 165
Bst2BI CACGAG 1 cut(s) 264
Bst4CI ACNGT 2 cut(s) 304, 393
Bst6I CTCTTC 1 cut(s) 589
BstC8I GCNNGC 2 cut(s) 183, 220
BstDEI CTNAG 5 cut(s) 41, 247, 501, 561, 675
BstF5I GGATG 2 cut(s) 467, 649
BstKTI GATC 3 cut(s) 34, 430, 461
BstMAI GTCTC 2 cut(s) 606, 662
BstMBI GATC 3 cut(s) 31, 427, 458
BstSLI GKGCMC 1 cut(s) 321
BstV1I GCAGC 1 cut(s) 282
BsuRI GGCC 1 cut(s) 234
BtsCI GGATG 2 cut(s) 467, 649
BtsIMutI CAGTG 2 cut(s) 49, 398
Cac8I GCNNGC 2 cut(s) 183, 220
Csp6I GTAC 1 cut(s) 538
CspCI CAANNNNNGTGG 2 cut(s) 318, 353
CviAII CATG 2 cut(s) 380, 532
CviJI RGCY 9 cut(s) 154, 181, 234, 245, 273, 416, 478, 520, 565
CviKI_1 RGCY 9 cut(s) 154, 181, 234, 245, 273, 416, 478, 520, 565
CviQI GTAC 1 cut(s) 538
DdeI CTNAG 5 cut(s) 41, 247, 501, 561, 675
DpnI GATC 3 cut(s) 33, 429, 460
DpnII GATC 3 cut(s) 31, 427, 458
DraIII CACNNNGTG 1 cut(s) 353
Eam1104I CTCTTC 1 cut(s) 589
EarI CTCTTC 1 cut(s) 589
Eco130I CCWWGG 1 cut(s) 165
Eco147I AGGCCT 1 cut(s) 234
EcoT14I CCWWGG 1 cut(s) 165
ErhI CCWWGG 1 cut(s) 165
FaeI CATG 2 cut(s) 383, 535
FaiI YATR 5 cut(s) 381, 407, 446, 533, 621
FatI CATG 2 cut(s) 379, 531
Fnu4HI GCNGC 2 cut(s) 271, 274
FokI GGATG 2 cut(s) 454, 656
Fsp4HI GCNGC 2 cut(s) 271, 274
FspBI CTAG 1 cut(s) 128
GluI GCNGC 2 cut(s) 271, 274
HaeIII GGCC 1 cut(s) 234
HapII CCGG 1 cut(s) 521
Hin1II CATG 2 cut(s) 383, 535
HindIII AAGCTT 1 cut(s) 476
HinfI GANTC 4 cut(s) 62, 262, 372, 581
HpaII CCGG 1 cut(s) 521
HphI GGTGA 3 cut(s) 579, 603, 673
Hpy166II GTNNAC 3 cut(s) 49, 319, 630
Hpy188I TCNGA 4 cut(s) 36, 202, 250, 289
Hpy188III TCNNGA 1 cut(s) 29
Hpy8I GTNNAC 3 cut(s) 49, 319, 630
HpyAV CCTTC 2 cut(s) 111, 362
HpyCH4III ACNGT 2 cut(s) 304, 393
HpyCH4V TGCA 8 cut(s) 86, 218, 259, 319, 379, 396, 494, 597
HpyF3I CTNAG 5 cut(s) 41, 247, 501, 561, 675
Hsp92II CATG 2 cut(s) 383, 535
Kzo9I GATC 3 cut(s) 31, 427, 458
LpnPI CCDG 9 cut(s) 90, 132, 168, 195, 327, 502, 534, 573, 644
Lsp1109I GCAGC 1 cut(s) 282
LweI GCATC 4 cut(s) 14, 205, 405, 546
MaeI CTAG 1 cut(s) 128
MaeIII GTNAC 1 cut(s) 609
MalI GATC 3 cut(s) 33, 429, 460
MboI GATC 3 cut(s) 31, 427, 458
MboII GAAGA 3 cut(s) 109, 377, 576
MfeI CAATTG 1 cut(s) 12
MhlI GDGCHC 1 cut(s) 321
MluCI AATT 1 cut(s) 12
MlyI GAGTC 2 cut(s) 256, 575
MmeI TCCRAC 1 cut(s) 52
MnlI CCTC 6 cut(s) 50, 135, 256, 355, 528, 600
MslI CAYNNNNRTG 1 cut(s) 54
MspI CCGG 1 cut(s) 521
MunI CAATTG 1 cut(s) 12
NdeII GATC 3 cut(s) 31, 427, 458
NlaIII CATG 2 cut(s) 383, 535
NmuCI GTSAC 1 cut(s) 609
PceI AGGCCT 1 cut(s) 234
PfeI GAWTC 2 cut(s) 62, 372
PflMI CCANNNNNTGG 1 cut(s) 353
PkrI GCNGC 2 cut(s) 272, 275
PleI GAGTC 2 cut(s) 256, 575
PpsI GAGTC 2 cut(s) 256, 575
RsaI GTAC 1 cut(s) 539
RsaNI GTAC 1 cut(s) 538
RseI CAYNNNNRTG 1 cut(s) 54
SatI GCNGC 2 cut(s) 271, 274
Sau3AI GATC 3 cut(s) 31, 427, 458
SchI GAGTC 2 cut(s) 256, 575
SduI GDGCHC 1 cut(s) 321
SfaNI GCATC 4 cut(s) 14, 205, 405, 546
SmiMI CAYNNNNRTG 1 cut(s) 54
Sse9I AATT 1 cut(s) 12
SseBI AGGCCT 1 cut(s) 234
SsiI CCGC 1 cut(s) 274
SspMI CTAG 1 cut(s) 128
StuI AGGCCT 1 cut(s) 234
StyI CCWWGG 1 cut(s) 165
TaaI ACNGT 2 cut(s) 304, 393
TaqI TCGA 3 cut(s) 19, 140, 173
TasI AATT 1 cut(s) 12
TauI GCSGC 1 cut(s) 276
TfiI GAWTC 2 cut(s) 62, 372
TscAI CASTG 2 cut(s) 49, 398
TseFI GTSAC 1 cut(s) 609
TseI GCWGC 1 cut(s) 270
Tsp45I GTSAC 1 cut(s) 609
TspRI CASTG 2 cut(s) 49, 398
Van91I CCANNNNNTGG 1 cut(s) 353
VneI GTGCAC 1 cut(s) 317
XcmI CCANNNNNNNNNTGG 1 cut(s) 538
XspI CTAG 1 cut(s) 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.