Prupe.3G151000_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0018100
Physical Location & Seq
Reverse (-)
16536278 .. 16539853
3576 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G151000.1

Sequence Viewer

Length: 390 bp
ATGGCCAAGGCTTCTTCTTTGTGTTCTCTTCATGTACTACAGCCATCTATCCGGAGCAGTTGCAGTCGTCGTCATCATGTCATGCAAGTAAGAGCTCAGAGCTTAGATGAAGGTAGATCAAGGAATATTGTAGATGCAAATTTGAGTGTTCTAAGAGAGAAGATGGAAGTAATTAAGATGCGGGAGAGACTTGAGAAATGTTGCAATAATCAGCACCAACAATATGGTTGGAATTATGCAGTGGGTTATAATTACAAACTCAGAAGAGCAAGGGAGGTATCAACGTTCTTCGAGCTCATGCGATTGGTTTGTGTGACTGTTGGTGCCACCTGTTTTACTGCTACTCTCTGCCTTGTCCTTGTTTCGCTTATGGTAAATTTGAATCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

130

Amino Acids

14.84

Weight (kDa)

9.57

Isoelectric Point (pI)

53.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018100)

Species Orthologous Gene IDs
malus_domestica MD09G1259200.v1.1 MD09G1259400.v1.1
prunus_persica Prupe.3G151000_v2.0.a1
pyrus_communis pycom09g17410
rosa_laevigata RLG00000022699
rosa_roxburghii Rroxscaffold_6G00391400
rosa_rugosa Rorug03G0263300
rosa_samantha Rh3AG312100 Rh3BG348000 Rh3DG348200
rosa_wichuraiana Rw3G027380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 249
AccB1I GGYRCC 1 cut(s) 323
AccIII TCCGGA 1 cut(s) 51
AciI CCGC 1 cut(s) 181
AclI AACGTT 1 cut(s) 284
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 139, 376
AfaI GTAC 1 cut(s) 36
AgsI TTSAA 1 cut(s) 382
AluBI AGCT 3 cut(s) 95, 102, 295
AluI AGCT 3 cut(s) 95, 102, 295
Alw21I GWGCWC 2 cut(s) 97, 297
Alw26I GTCTC 1 cut(s) 181
Aor13HI TCCGGA 1 cut(s) 51
AoxI GGCC 1 cut(s) 3
ApoI RAATTY 2 cut(s) 139, 376
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 323
BanII GRGCYC 2 cut(s) 97, 297
Bbv12I GWGCWC 2 cut(s) 97, 297
BccI CCATC 2 cut(s) 52, 157
BcoDI GTCTC 1 cut(s) 181
BfmI CTRYAG 1 cut(s) 38
BmiI GGNNCC 1 cut(s) 325
BmsI GCATC 2 cut(s) 124, 168
BpuEI CTTGAG 1 cut(s) 212
BsaJI CCNNGG 1 cut(s) 6
BsaWI WCCGGW 1 cut(s) 51
BseAI TCCGGA 1 cut(s) 51
BseDI CCNNGG 1 cut(s) 6
BseMII CTCAG 2 cut(s) 110, 274
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 1 cut(s) 323
BsiHKAI GWGCWC 2 cut(s) 97, 297
BsiSI CCGG 1 cut(s) 52
BsmAI GTCTC 1 cut(s) 181
BsnI GGCC 1 cut(s) 5
Bsp1286I GDGCHC 2 cut(s) 97, 297
Bsp13I TCCGGA 1 cut(s) 51
Bsp143I GATC 1 cut(s) 116
BspACI CCGC 1 cut(s) 181
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 2 cut(s) 109, 273
BspEI TCCGGA 1 cut(s) 51
BspLI GGNNCC 1 cut(s) 325
BspQI GCTCTTC 1 cut(s) 259
BspT107I GGYRCC 1 cut(s) 323
BssECI CCNNGG 1 cut(s) 6
BssMI GATC 1 cut(s) 116
BssT1I CCWWGG 1 cut(s) 6
Bst4CI ACNGT 1 cut(s) 319
Bst6I CTCTTC 2 cut(s) 33, 259
BstDEI CTNAG 4 cut(s) 96, 103, 152, 260
BstKTI GATC 1 cut(s) 119
BstMAI GTCTC 1 cut(s) 181
BstMBI GATC 1 cut(s) 116
BstSFI CTRYAG 1 cut(s) 38
BstXI CCANNNNNNTGG 1 cut(s) 224
BsuRI GGCC 1 cut(s) 5
BtsI GCAGTG 1 cut(s) 246
BtsIMutI CAGTG 1 cut(s) 246
Csp6I GTAC 1 cut(s) 35
CviAII CATG 4 cut(s) 32, 77, 82, 298
CviJI RGCY 6 cut(s) 5, 11, 43, 95, 102, 295
CviKI_1 RGCY 6 cut(s) 5, 11, 43, 95, 102, 295
CviQI GTAC 1 cut(s) 35
DdeI CTNAG 4 cut(s) 96, 103, 152, 260
DpnI GATC 1 cut(s) 118
DpnII GATC 1 cut(s) 116
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 33, 259
EarI CTCTTC 2 cut(s) 33, 259
Ecl136II GAGCTC 2 cut(s) 95, 295
Eco130I CCWWGG 1 cut(s) 6
Eco24I GRGCYC 2 cut(s) 97, 297
Eco53kI GAGCTC 2 cut(s) 95, 295
EcoICRI GAGCTC 2 cut(s) 95, 295
EcoT14I CCWWGG 1 cut(s) 6
EcoT38I GRGCYC 2 cut(s) 97, 297
ErhI CCWWGG 1 cut(s) 6
FaeI CATG 4 cut(s) 35, 80, 85, 301
FaiI YATR 8 cut(s) 33, 78, 83, 225, 237, 249, 299, 371
FatI CATG 4 cut(s) 31, 76, 81, 297
FauI CCCGC 1 cut(s) 174
FriOI GRGCYC 2 cut(s) 97, 297
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 52
Hin1II CATG 4 cut(s) 35, 80, 85, 301
HinfI GANTC 1 cut(s) 382
HpaII CCGG 1 cut(s) 52
Hpy188I TCNGA 2 cut(s) 99, 263
Hpy188III TCNNGA 1 cut(s) 52
Hpy99I CGWCG 1 cut(s) 72
HpyAV CCTTC 1 cut(s) 104
HpyCH4III ACNGT 1 cut(s) 319
HpyCH4IV ACGT 1 cut(s) 284
HpyCH4V TGCA 5 cut(s) 63, 85, 137, 204, 239
HpyF3I CTNAG 4 cut(s) 96, 103, 152, 260
HpySE526I ACGT 1 cut(s) 284
Hsp92II CATG 4 cut(s) 35, 80, 85, 301
Kpn2I TCCGGA 1 cut(s) 51
Kzo9I GATC 1 cut(s) 116
LguI GCTCTTC 1 cut(s) 259
LmnI GCTCC 1 cut(s) 54
LpnPI CCDG 2 cut(s) 65, 343
LweI GCATC 2 cut(s) 124, 168
MaeII ACGT 1 cut(s) 284
MaeIII GTNAC 1 cut(s) 313
MalI GATC 1 cut(s) 118
MboI GATC 1 cut(s) 116
MboII GAAGA 5 cut(s) 6, 20, 172, 276, 280
MhlI GDGCHC 2 cut(s) 97, 297
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 5 cut(s) 139, 171, 232, 250, 376
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 209
MnlI CCTC 1 cut(s) 268
Mox20I TGGCCA 1 cut(s) 5
MroI TCCGGA 1 cut(s) 51
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 174
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 52
NdeII GATC 1 cut(s) 116
NlaIII CATG 4 cut(s) 35, 80, 85, 301
NlaIV GGNNCC 1 cut(s) 325
NmuCI GTSAC 1 cut(s) 313
PciSI GCTCTTC 1 cut(s) 259
PfeI GAWTC 1 cut(s) 382
PsiI TTATAA 1 cut(s) 249
Psp124BI GAGCTC 2 cut(s) 97, 297
Psp1406I AACGTT 1 cut(s) 284
PspN4I GGNNCC 1 cut(s) 325
RsaI GTAC 1 cut(s) 36
RsaNI GTAC 1 cut(s) 35
SacI GAGCTC 2 cut(s) 97, 297
SapI GCTCTTC 1 cut(s) 259
SaqAI TTAA 1 cut(s) 174
Sau3AI GATC 1 cut(s) 116
SduI GDGCHC 2 cut(s) 97, 297
SetI ASST 7 cut(s) 97, 104, 115, 279, 287, 297, 332
SfaNI GCATC 2 cut(s) 124, 168
SfcI CTRYAG 1 cut(s) 38
SmlI CTYRAG 1 cut(s) 191
SmoI CTYRAG 1 cut(s) 191
Sse9I AATT 5 cut(s) 139, 171, 232, 250, 376
SsiI CCGC 1 cut(s) 181
SspI AATATT 1 cut(s) 127
SstI GAGCTC 2 cut(s) 97, 297
StyI CCWWGG 1 cut(s) 6
TaaI ACNGT 1 cut(s) 319
TaiI ACGT 1 cut(s) 287
TaqI TCGA 1 cut(s) 291
TasI AATT 5 cut(s) 139, 171, 232, 250, 376
TatI WGTACW 1 cut(s) 34
TfiI GAWTC 1 cut(s) 382
Tru1I TTAA 1 cut(s) 174
Tru9I TTAA 1 cut(s) 174
TscAI CASTG 1 cut(s) 246
TseFI GTSAC 1 cut(s) 313
Tsp45I GTSAC 1 cut(s) 313
TspDTI ATGAA 2 cut(s) 20, 123
TspRI CASTG 1 cut(s) 246
XapI RAATTY 2 cut(s) 139, 376
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.