MD09G1259400.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0018100
Physical Location & Seq
Reverse (-)
33237695 .. 33240226
2532 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1259400.v1.1.491

Sequence Viewer

Length: 405 bp
ATGGCGAAGGCTTCTTCTTCTCTACCTTCTCTGTGTAACCTTGTACAGCCATCTACCATAAAGATCCGTTGTAGTACTCGTCTTCGTAGGATCATGCAAGTAAGAGCTCAGAGCTTAGATGAAGAAGGTAGATCAAGGAATATTGTGGATGCAAATTTGAGTGTTTTAAGAGAGAAGATGGAAGTCGTGAAGATGAGGGAGAGACTTGAGAAATATTGCTGCAAACGTCAACAAAATGGTTGGAATTATTCACCGGGATATAATTACAAACTCAGAAGAGCAAGAGATGTATCGACGTTCTTTGAGCTCATACGTTTAGTGGGCGTGACTCTTGGTTTTACCTGTTTTAGTGCCACATTCCTCCTTGTCCTTGTATCAATCTTGGTTCACTTGAATCCATGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

135

Amino Acids

15.52

Weight (kDa)

10.11

Isoelectric Point (pI)

56.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018100)

Species Orthologous Gene IDs
malus_domestica MD09G1259200.v1.1 MD09G1259400.v1.1
prunus_persica Prupe.3G151000_v2.0.a1
pyrus_communis pycom09g17410
rosa_laevigata RLG00000022699
rosa_roxburghii Rroxscaffold_6G00391400
rosa_rugosa Rorug03G0263300
rosa_samantha Rh3AG312100 Rh3BG348000 Rh3DG348200
rosa_wichuraiana Rw3G027380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 58, 98
AcsI RAATTY 1 cut(s) 154
AfaI GTAC 2 cut(s) 45, 76
AgsI TTSAA 1 cut(s) 394
AluBI AGCT 3 cut(s) 107, 114, 307
AluI AGCT 3 cut(s) 107, 114, 307
Alw21I GWGCWC 2 cut(s) 109, 309
Alw26I GTCTC 1 cut(s) 196
AlwI GGATC 2 cut(s) 58, 98
ApeKI GCWGC 1 cut(s) 219
ApoI RAATTY 1 cut(s) 154
AsuC2I CCSGG 1 cut(s) 255
AsuHPI GGTGA 1 cut(s) 243
BanII GRGCYC 2 cut(s) 109, 309
BbsI GAAGAC 1 cut(s) 74
Bbv12I GWGCWC 2 cut(s) 109, 309
BbvI GCAGC 1 cut(s) 206
BccI CCATC 2 cut(s) 58, 172
BcnI CCSGG 1 cut(s) 255
BcoDI GTCTC 1 cut(s) 196
BisI GCNGC 1 cut(s) 220
BlsI GCNGC 1 cut(s) 221
BmcAI AGTACT 1 cut(s) 76
Bme1390I CCNGG 1 cut(s) 255
BmrFI CCNGG 1 cut(s) 255
BmsI GCATC 1 cut(s) 139
BpiI GAAGAC 1 cut(s) 74
BpuEI CTTGAG 1 cut(s) 227
BpuMI CCSGG 1 cut(s) 255
BsaJI CCNNGG 1 cut(s) 398
BseDI CCNNGG 1 cut(s) 398
BseGI GGATG 1 cut(s) 154
BseMII CTCAG 2 cut(s) 122, 286
BseXI GCAGC 1 cut(s) 206
BsiHKAI GWGCWC 2 cut(s) 109, 309
BsiSI CCGG 1 cut(s) 254
BsmAI GTCTC 1 cut(s) 196
Bsp1286I GDGCHC 2 cut(s) 109, 309
Bsp1407I TGTACA 1 cut(s) 43
Bsp143I GATC 3 cut(s) 63, 90, 131
Bsp19I CCATGG 1 cut(s) 398
BspCNI CTCAG 2 cut(s) 121, 285
BspPI GGATC 2 cut(s) 58, 98
BspQI GCTCTTC 1 cut(s) 271
BsrGI TGTACA 1 cut(s) 43
BssECI CCNNGG 1 cut(s) 398
BssMI GATC 3 cut(s) 63, 90, 131
BssT1I CCWWGG 1 cut(s) 398
Bst6I CTCTTC 1 cut(s) 271
BstAUI TGTACA 1 cut(s) 43
BstDEI CTNAG 3 cut(s) 108, 115, 272
BstDSI CCRYGG 1 cut(s) 398
BstF5I GGATG 1 cut(s) 154
BstKTI GATC 3 cut(s) 66, 93, 134
BstMAI GTCTC 1 cut(s) 196
BstMBI GATC 3 cut(s) 63, 90, 131
BstSCI CCNGG 1 cut(s) 253
BstV1I GCAGC 1 cut(s) 206
BstV2I GAAGAC 1 cut(s) 74
BstX2I RGATCY 1 cut(s) 63
BstYI RGATCY 1 cut(s) 63
BtgI CCRYGG 1 cut(s) 398
BtsCI GGATG 1 cut(s) 154
Csp6I GTAC 2 cut(s) 44, 75
CviAII CATG 2 cut(s) 94, 399
CviJI RGCY 5 cut(s) 11, 49, 107, 114, 307
CviKI_1 RGCY 5 cut(s) 11, 49, 107, 114, 307
CviQI GTAC 2 cut(s) 44, 75
DdeI CTNAG 3 cut(s) 108, 115, 272
DpnI GATC 3 cut(s) 65, 92, 133
DpnII GATC 3 cut(s) 63, 90, 131
Eam1104I CTCTTC 1 cut(s) 271
EarI CTCTTC 1 cut(s) 271
Ecl136II GAGCTC 2 cut(s) 107, 307
Eco130I CCWWGG 1 cut(s) 398
Eco24I GRGCYC 2 cut(s) 109, 309
Eco53kI GAGCTC 2 cut(s) 107, 307
EcoICRI GAGCTC 2 cut(s) 107, 307
EcoT14I CCWWGG 1 cut(s) 398
EcoT38I GRGCYC 2 cut(s) 109, 309
ErhI CCWWGG 1 cut(s) 398
FaeI CATG 2 cut(s) 97, 402
FaiI YATR 5 cut(s) 59, 95, 261, 311, 400
FatI CATG 2 cut(s) 93, 398
Fnu4HI GCNGC 1 cut(s) 220
FokI GGATG 1 cut(s) 161
FriOI GRGCYC 2 cut(s) 109, 309
Fsp4HI GCNGC 1 cut(s) 220
GluI GCNGC 1 cut(s) 220
HapII CCGG 1 cut(s) 254
Hin1II CATG 2 cut(s) 97, 402
HincII GTYRAC 1 cut(s) 230
HindII GTYRAC 1 cut(s) 230
HinfI GANTC 2 cut(s) 328, 394
HpaII CCGG 1 cut(s) 254
HphI GGTGA 1 cut(s) 243
Hpy166II GTNNAC 2 cut(s) 230, 388
Hpy188I TCNGA 2 cut(s) 111, 275
Hpy188III TCNNGA 1 cut(s) 187
Hpy8I GTNNAC 2 cut(s) 230, 388
Hpy99I CGWCG 1 cut(s) 298
HpyAV CCTTC 2 cut(s) 36, 119
HpyCH4IV ACGT 3 cut(s) 226, 296, 313
HpyCH4V TGCA 3 cut(s) 97, 152, 222
HpyF3I CTNAG 3 cut(s) 108, 115, 272
HpySE526I ACGT 3 cut(s) 226, 296, 313
Hsp92II CATG 2 cut(s) 97, 402
Kzo9I GATC 3 cut(s) 63, 90, 131
LguI GCTCTTC 1 cut(s) 271
LpnPI CCDG 2 cut(s) 267, 355
Lsp1109I GCAGC 1 cut(s) 206
LweI GCATC 1 cut(s) 139
MaeII ACGT 3 cut(s) 226, 296, 313
MaeIII GTNAC 2 cut(s) 35, 325
MalI GATC 3 cut(s) 65, 92, 133
MboI GATC 3 cut(s) 63, 90, 131
MboII GAAGA 7 cut(s) 6, 9, 74, 134, 187, 202, 288
MflI RGATCY 1 cut(s) 63
MhlI GDGCHC 2 cut(s) 109, 309
MluCI AATT 3 cut(s) 154, 244, 262
MlyI GAGTC 1 cut(s) 322
MmeI TCCRAC 1 cut(s) 221
MnlI CCTC 2 cut(s) 189, 371
MseI TTAA 1 cut(s) 167
MspI CCGG 1 cut(s) 254
MspR9I CCNGG 1 cut(s) 255
NciI CCSGG 1 cut(s) 255
NcoI CCATGG 1 cut(s) 398
NdeII GATC 3 cut(s) 63, 90, 131
NlaIII CATG 2 cut(s) 97, 402
NmuCI GTSAC 1 cut(s) 325
PciSI GCTCTTC 1 cut(s) 271
PfeI GAWTC 1 cut(s) 394
PkrI GCNGC 1 cut(s) 221
PleI GAGTC 1 cut(s) 322
PpsI GAGTC 1 cut(s) 322
Psp124BI GAGCTC 2 cut(s) 109, 309
PsuI RGATCY 1 cut(s) 63
RsaI GTAC 2 cut(s) 45, 76
RsaNI GTAC 2 cut(s) 44, 75
SacI GAGCTC 2 cut(s) 109, 309
SapI GCTCTTC 1 cut(s) 271
SaqAI TTAA 1 cut(s) 167
SatI GCNGC 1 cut(s) 220
Sau3AI GATC 3 cut(s) 63, 90, 131
ScaI AGTACT 1 cut(s) 76
SchI GAGTC 1 cut(s) 322
ScrFI CCNGG 1 cut(s) 255
SduI GDGCHC 2 cut(s) 109, 309
SfaNI GCATC 1 cut(s) 139
SmlI CTYRAG 1 cut(s) 206
SmoI CTYRAG 1 cut(s) 206
Sse9I AATT 3 cut(s) 154, 244, 262
SspI AATATT 2 cut(s) 142, 215
SstI GAGCTC 2 cut(s) 109, 309
StyD4I CCNGG 1 cut(s) 253
StyI CCWWGG 1 cut(s) 398
TaiI ACGT 3 cut(s) 229, 299, 316
TaqI TCGA 1 cut(s) 293
TasI AATT 3 cut(s) 154, 244, 262
TatI WGTACW 2 cut(s) 43, 74
TfiI GAWTC 1 cut(s) 394
Tru1I TTAA 1 cut(s) 167
Tru9I TTAA 1 cut(s) 167
TseFI GTSAC 1 cut(s) 325
TseI GCWGC 1 cut(s) 219
Tsp45I GTSAC 1 cut(s) 325
TspDTI ATGAA 1 cut(s) 135
TspGWI ACGGA 1 cut(s) 56
XapI RAATTY 1 cut(s) 154
ZrmI AGTACT 1 cut(s) 76
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.