Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0017733

Physical Location & Seq

Genomic Coordinates Forward (+)

34256278 .. 34256818

Gene Structure 541 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1268100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGGTTGGAACAAGGACATGGCGCCATTTCGCGACTTCTGATGGGATAGAGGCGATCATGAGCTTCGATGAGATGGGGTTGAAGGATGATGTGCTCCAAGGCATCTACGAATATGGGTACGAAAAGCCCTCCGCCATCCAGCAACGGGCGGTCAGGCGCATTATCGAGGGTTATGATGTCATAGCCCAGTCCCAGTCAGGTACCGGCAAAACCTCCATGATTGCCCTTACCGCTTGCCAACTCGTCGACACCTCCTGCCGAGAGGTTCAGGCTTTGATATTGTGTCCCACTAGGGAACTGGCGGCACAGACGGAGAAGGTGATATTAGCAATTGGAAATCACATGAACATACAAGCGCATGCTTGCATCGGAGGCAAAAAGCGTGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003729 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009628 GO:0009987 GO:0010467 GO:0010468 GO:0010501 GO:0016020 GO:0016070 GO:0016462 GO:0016604 GO:0016607 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0035145 GO:0036293 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0050789 GO:0050896 GO:0060255 GO:0065007 GO:0070013 GO:0070035 GO:0070482 GO:0071013 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03040 map03013 map03015 map03040

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

130

Amino Acids

14.15

Weight (kDa)

6.82

Isoelectric Point (pI)

47.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ResIII	PF04851	43 - 114	4e-06	Type III restriction enzyme, res subunit
DEAD	PF00270	45 - 128	2.6e-19	DEAD/DEAH box helicase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017733)

Species	Orthologous Gene IDs
malus_domestica	MD09G1268100.v1.1
prunus_persica	Prupe.5G019300_v2.0.a1
pyrus_communis	pycom13g00570
rosa_chinensis	RchiOBHm_Chr0c44g0503471 RchiOBHm_Chr0c44g0503481 RchiOBHm_Chr0c44g0503571 RchiOBHm_Chr0c44g0503761 RchiOBHm_Chr0c44g0503771 RchiOBHm_Chr4g0386201 RchiOBHm_Chr4g0386211 RchiOBHm_Chr4g0386351
rosa_samantha	Rh2DG639600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	200
AccB1I	GGYRCC	2 cut(s)	21, 200
AccI	GTMKAC	1 cut(s)	246
AccII	CGCG	1 cut(s)	32
AciI	CCGC	4 cut(s)	132, 149, 231, 302
AcyI	GRCGYC	1 cut(s)	22
AfaI	GTAC	2 cut(s)	119, 202
AfiI	CCNNNNNNNGG	1 cut(s)	145
AgsI	TTSAA	1 cut(s)	82
AluBI	AGCT	1 cut(s)	63
AluI	AGCT	1 cut(s)	63
Alw21I	GWGCWC	1 cut(s)	96
Asp718I	GGTACC	1 cut(s)	200
AspLEI	GCGC	3 cut(s)	24, 159, 358
AsuHPI	GGTGA	1 cut(s)	331
BanI	GGYRCC	2 cut(s)	21, 200
Bbv12I	GWGCWC	1 cut(s)	96
BccI	CCATC	3 cut(s)	35, 67, 143
BfaI	CTAG	1 cut(s)	291
BfoI	RGCGCY	1 cut(s)	25
BisI	GCNGC	1 cut(s)	303
BlsI	GCNGC	1 cut(s)	304
BmiI	GGNNCC	2 cut(s)	23, 202
BmrI	ACTGGG	2 cut(s)	181, 187
BmsI	GCATC	2 cut(s)	111, 375
BmuI	ACTGGG	2 cut(s)	181, 187
BsaHI	GRCGYC	1 cut(s)	22
BsaJI	CCNNGG	1 cut(s)	97
Bsc4I	CCNNNNNNNGG	1 cut(s)	145
Bse118I	RCCGGY	1 cut(s)	203
Bse1I	ACTGG	3 cut(s)	187, 193, 303
BseDI	CCNNGG	1 cut(s)	97
BseGI	GGATG	2 cut(s)	91, 135
BseLI	CCNNNNNNNGG	1 cut(s)	145
BseNI	ACTGG	3 cut(s)	187, 193, 303
Bsh1236I	CGCG	1 cut(s)	32
BshNI	GGYRCC	2 cut(s)	21, 200
BsiHKAI	GWGCWC	1 cut(s)	96
BsiSI	CCGG	1 cut(s)	204
BslFI	GGGAC	2 cut(s)	175, 270
BslI	CCNNNNNNNGG	1 cut(s)	145
BsmFI	GGGAC	2 cut(s)	175, 270
Bsp1286I	GDGCHC	1 cut(s)	96
Bsp143I	GATC	1 cut(s)	54
Bsp68I	TCGCGA	1 cut(s)	32
BspACI	CCGC	4 cut(s)	132, 149, 231, 302
BspFNI	CGCG	1 cut(s)	32
BspHI	TCATGA	1 cut(s)	57
BspLI	GGNNCC	2 cut(s)	23, 202
BspT107I	GGYRCC	2 cut(s)	21, 200
BsrFI	RCCGGY	1 cut(s)	203
BsrI	ACTGG	3 cut(s)	187, 193, 303
BssAI	RCCGGY	1 cut(s)	203
BssECI	CCNNGG	1 cut(s)	97
BssMI	GATC	1 cut(s)	54
BssNI	GRCGYC	1 cut(s)	22
BssT1I	CCWWGG	1 cut(s)	97
BstACI	GRCGYC	1 cut(s)	22
BstC8I	GCNNGC	3 cut(s)	235, 360, 364
BstF5I	GGATG	2 cut(s)	91, 135
BstFNI	CGCG	1 cut(s)	32
BstH2I	RGCGCY	1 cut(s)	25
BstHHI	GCGC	3 cut(s)	24, 159, 358
BstKTI	GATC	1 cut(s)	57
BstMBI	GATC	1 cut(s)	54
BstMWI	GCNNNNNNNGC	2 cut(s)	230, 372
BstNSI	RCATGY	1 cut(s)	362
BstUI	CGCG	1 cut(s)	32
BtsCI	GGATG	2 cut(s)	91, 135
BtuMI	TCGCGA	1 cut(s)	32
Cac8I	GCNNGC	3 cut(s)	235, 360, 364
CciI	TCATGA	1 cut(s)	57
CfoI	GCGC	3 cut(s)	24, 159, 358
Cfr10I	RCCGGY	1 cut(s)	203
Csp6I	GTAC	2 cut(s)	118, 201
CspCI	CAANNNNNGTGG	1 cut(s)	364
CviAII	CATG	5 cut(s)	18, 58, 217, 343, 359
CviJI	RGCY	5 cut(s)	63, 127, 185, 272, 387
CviKI_1	RGCY	5 cut(s)	63, 127, 185, 272, 387
CviQI	GTAC	2 cut(s)	118, 201
DinI	GGCGCC	1 cut(s)	23
DpnI	GATC	1 cut(s)	56
DpnII	GATC	1 cut(s)	54
EciI	GGCGGA	1 cut(s)	121
Eco130I	CCWWGG	1 cut(s)	97
EcoT14I	CCWWGG	1 cut(s)	97
EgeI	GGCGCC	1 cut(s)	23
EheI	GGCGCC	1 cut(s)	23
ErhI	CCWWGG	1 cut(s)	97
FaeI	CATG	5 cut(s)	21, 61, 220, 346, 362
FaiI	YATR	9 cut(s)	19, 59, 114, 174, 182, 218, 344, 350, 360
FaqI	GGGAC	2 cut(s)	175, 270
FatI	CATG	5 cut(s)	17, 57, 216, 342, 358
FblI	GTMKAC	1 cut(s)	246
Fnu4HI	GCNGC	1 cut(s)	303
FokI	GGATG	2 cut(s)	98, 122
Fsp4HI	GCNGC	1 cut(s)	303
FspBI	CTAG	1 cut(s)	291
GlaI	GCGC	3 cut(s)	23, 158, 357
GluI	GCNGC	1 cut(s)	303
HaeII	RGCGCY	1 cut(s)	25
HapII	CCGG	1 cut(s)	204
HhaI	GCGC	3 cut(s)	24, 159, 358
Hin1I	GRCGYC	1 cut(s)	22
Hin1II	CATG	5 cut(s)	21, 61, 220, 346, 362
Hin6I	GCGC	3 cut(s)	22, 157, 356
HinP1I	GCGC	3 cut(s)	22, 157, 356
HincII	GTYRAC	1 cut(s)	247
HindII	GTYRAC	1 cut(s)	247
HpaII	CCGG	1 cut(s)	204
HphI	GGTGA	1 cut(s)	331
Hpy166II	GTNNAC	1 cut(s)	247
Hpy188I	TCNGA	2 cut(s)	40, 371
Hpy188III	TCNNGA	2 cut(s)	31, 58
Hpy8I	GTNNAC	1 cut(s)	247
Hpy99I	CGWCG	1 cut(s)	248
HpyAV	CCTTC	2 cut(s)	76, 310
HpyCH4V	TGCA	1 cut(s)	366
HpyF10VI	GCNNNNNNNGC	2 cut(s)	230, 372
Hsp92I	GRCGYC	1 cut(s)	22
Hsp92II	CATG	5 cut(s)	21, 61, 220, 346, 362
HspAI	GCGC	3 cut(s)	22, 157, 356
KasI	GGCGCC	1 cut(s)	21
KpnI	GGTACC	1 cut(s)	204
Kzo9I	GATC	1 cut(s)	54
LmnI	GCTCC	1 cut(s)	99
LpnPI	CCDG	9 cut(s)	139, 152, 183, 200, 206, 217, 254, 268, 284
LweI	GCATC	2 cut(s)	111, 375
MaeI	CTAG	1 cut(s)	291
MalI	GATC	1 cut(s)	56
MboI	GATC	1 cut(s)	54
MfeI	CAATTG	1 cut(s)	330
MhlI	GDGCHC	1 cut(s)	96
MluCI	AATT	1 cut(s)	330
Mly113I	GGCGCC	1 cut(s)	22
MnlI	CCTC	7 cut(s)	43, 139, 160, 223, 256, 262, 365
MspI	CCGG	1 cut(s)	204
MunI	CAATTG	1 cut(s)	330
MvnI	CGCG	1 cut(s)	32
MwoI	GCNNNNNNNGC	2 cut(s)	230, 372
NarI	GGCGCC	1 cut(s)	22
NdeII	GATC	1 cut(s)	54
NlaIII	CATG	5 cut(s)	21, 61, 220, 346, 362
NlaIV	GGNNCC	2 cut(s)	23, 202
NmeAIII	GCCGAG	1 cut(s)	284
NruI	TCGCGA	1 cut(s)	32
NspI	RCATGY	1 cut(s)	362
PaeI	GCATGC	1 cut(s)	362
PagI	TCATGA	1 cut(s)	57
PkrI	GCNGC	1 cut(s)	304
PluTI	GGCGCC	1 cut(s)	25
PspN4I	GGNNCC	2 cut(s)	23, 202
RruI	TCGCGA	1 cut(s)	32
RsaI	GTAC	2 cut(s)	119, 202
RsaNI	GTAC	2 cut(s)	118, 201
SalI	GTCGAC	1 cut(s)	245
SatI	GCNGC	1 cut(s)	303
Sau3AI	GATC	1 cut(s)	54
SduI	GDGCHC	1 cut(s)	96
SetI	ASST	6 cut(s)	65, 202, 215, 254, 267, 321
SfaNI	GCATC	2 cut(s)	111, 375
SfoI	GGCGCC	1 cut(s)	23
SphI	GCATGC	1 cut(s)	362
Sse9I	AATT	1 cut(s)	330
SsiI	CCGC	4 cut(s)	132, 149, 231, 302
SspDI	GGCGCC	1 cut(s)	21
SspMI	CTAG	1 cut(s)	291
StyI	CCWWGG	1 cut(s)	97
TaqI	TCGA	3 cut(s)	66, 165, 246
TasI	AATT	1 cut(s)	330
TauI	GCSGC	1 cut(s)	305
TspDTI	ATGAA	1 cut(s)	359
TspGWI	ACGGA	1 cut(s)	326
XceI	RCATGY	1 cut(s)	362
XcmI	CCANNNNNNNNNTGG	1 cut(s)	295
XmiI	GTMKAC	1 cut(s)	246
XspI	CTAG	1 cut(s)	291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.