Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0017733

Physical Location & Seq

Genomic Coordinates Reverse (-)

1744023 .. 1744962

Gene Structure 940 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ35958

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGCAGCAATAGCAACCGCGAGAGTGAGCGTGGTTCCGATGACCCGACCGGTTCAGGGCGGCGGCAAGGTGCTGAAGGAGAAGCTGGAGTTTGTGCCATCAGATGATATAAAGCCGATCATGAGCTTCGATCAGATGAACCTCAAGGACGAGCTCCTCCGAGGCATCTACAACTACGGCTTCGAGAAGCCCTCCGCCATCCAGCAAACGGCCATCAGACCCATAATCGATGGTCGCGACGTCGTAGCTCAGGCTCAATCTGGCACTGGAAAGACCTCCATGATTGCCCTAGCTTCTTGCCAAACCGTCGACACCTCCTCCAGAGAGGTTCAGGTGTTGATATTGTCTCCAACGAGGGAATTGGCGGCACAGATAGAGAAAGTGATACTGGCAATGGGAAACTACATGAATATTCAAGCGCATTCCTGCATTGGAGGCAAAAGCGTGGGTGAGGATATCAGAAAGCTAGAAAACGGAGTTCAGGTGGTGTTTGGAACTCCCGGTAGAGTCCATGATATGATTCAGAGGGAAGTCTACTCACTCGACACATCAAACTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003729 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009628 GO:0009987 GO:0010467 GO:0010468 GO:0010501 GO:0016020 GO:0016070 GO:0016462 GO:0016604 GO:0016607 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0035145 GO:0036293 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0050789 GO:0050896 GO:0060255 GO:0065007 GO:0070013 GO:0070035 GO:0070482 GO:0071013 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03040 map03013 map03015 map03040

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

186

Amino Acids

20.27

Weight (kDa)

6.74

Isoelectric Point (pI)

30.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ResIII	PF04851	65 - 174	6.1e-06	Type III restriction enzyme, res subunit
DEAD	PF00270	66 - 177	1.3e-29	DEAD/DEAH box helicase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017733)

Species	Orthologous Gene IDs
malus_domestica	MD09G1268100.v1.1
prunus_persica	Prupe.5G019300_v2.0.a1
pyrus_communis	pycom13g00570
rosa_chinensis	RchiOBHm_Chr0c44g0503471 RchiOBHm_Chr0c44g0503481 RchiOBHm_Chr0c44g0503571 RchiOBHm_Chr0c44g0503761 RchiOBHm_Chr0c44g0503771 RchiOBHm_Chr4g0386201 RchiOBHm_Chr4g0386211 RchiOBHm_Chr4g0386351
rosa_samantha	Rh2DG639600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	243
AccI	GTMKAC	2 cut(s)	309, 534
AccII	CGCG	2 cut(s)	20, 237
AciI	CCGC	5 cut(s)	18, 60, 63, 195, 365
AcoI	YGGCCR	1 cut(s)	210
AcuI	CTGAAG	1 cut(s)	95
AcyI	GRCGYC	1 cut(s)	240
AfiI	CCNNNNNNNGG	2 cut(s)	56, 208
AgeI	ACCGGT	1 cut(s)	49
AgsI	TTSAA	1 cut(s)	416
AluBI	AGCT	6 cut(s)	85, 126, 154, 248, 293, 466
AluI	AGCT	6 cut(s)	85, 126, 154, 248, 293, 466
Alw21I	GWGCWC	1 cut(s)	156
Alw26I	GTCTC	1 cut(s)	351
AoxI	GGCC	1 cut(s)	210
ApeKI	GCWGC	1 cut(s)	5
AsiGI	ACCGGT	1 cut(s)	49
AspLEI	GCGC	1 cut(s)	421
AsuC2I	CCSGG	1 cut(s)	501
AsuHPI	GGTGA	1 cut(s)	461
BanII	GRGCYC	1 cut(s)	156
Bbv12I	GWGCWC	1 cut(s)	156
BbvI	GCAGC	1 cut(s)	17
BccI	CCATC	4 cut(s)	106, 206, 221, 224
BceAI	ACGGC	2 cut(s)	193, 225
BcnI	CCSGG	1 cut(s)	501
BcoDI	GTCTC	1 cut(s)	351
BfaI	CTAG	2 cut(s)	290, 467
BisI	GCNGC	4 cut(s)	6, 61, 64, 366
BlsI	GCNGC	4 cut(s)	7, 62, 65, 367
Bme1390I	CCNGG	1 cut(s)	501
BmiI	GGNNCC	1 cut(s)	36
BmrFI	CCNGG	1 cut(s)	501
BmsI	GCATC	1 cut(s)	174
BplI	GAGNNNNNCTC	2 cut(s)	176, 208
BpmI	CTGGAG	2 cut(s)	107, 304
Bpu10I	CCTNAGC	1 cut(s)	249
BpuEI	CTTGAG	1 cut(s)	128
BpuMI	CCSGG	1 cut(s)	501
Bsa29I	ATCGAT	1 cut(s)	228
BsaHI	GRCGYC	1 cut(s)	240
BsaJI	CCNNGG	1 cut(s)	160
BsaWI	WCCGGW	1 cut(s)	49
BsaXI	ACNNNNNCTCC	4 cut(s)	302, 332, 468, 498
Bsc4I	CCNNNNNNNGG	2 cut(s)	56, 208
Bse118I	RCCGGY	1 cut(s)	49
Bse1I	ACTGG	2 cut(s)	271, 393
Bse3DI	GCAATG	1 cut(s)	399
BseCI	ATCGAT	1 cut(s)	228
BseDI	CCNNGG	1 cut(s)	160
BseGI	GGATG	1 cut(s)	198
BseLI	CCNNNNNNNGG	2 cut(s)	56, 208
BseMI	GCAATG	1 cut(s)	399
BseMII	CTCAG	1 cut(s)	263
BseNI	ACTGG	2 cut(s)	271, 393
BseRI	GAGGAG	2 cut(s)	146, 307
BseXI	GCAGC	1 cut(s)	17
Bsh1236I	CGCG	2 cut(s)	20, 237
Bsh1285I	CGRYCG	1 cut(s)	50
BshFI	GGCC	1 cut(s)	212
BshTI	ACCGGT	1 cut(s)	49
BshVI	ATCGAT	1 cut(s)	228
BsiEI	CGRYCG	1 cut(s)	50
BsiHKAI	GWGCWC	1 cut(s)	156
BsiSI	CCGG	2 cut(s)	50, 501
BslI	CCNNNNNNNGG	2 cut(s)	56, 208
BsmAI	GTCTC	1 cut(s)	351
BsmI	GAATGC	1 cut(s)	421
BsnI	GGCC	1 cut(s)	212
Bsp1286I	GDGCHC	1 cut(s)	156
Bsp143I	GATC	2 cut(s)	117, 130
Bsp68I	TCGCGA	1 cut(s)	237
BspACI	CCGC	5 cut(s)	18, 60, 63, 195, 365
BspANI	GGCC	1 cut(s)	212
BspCNI	CTCAG	1 cut(s)	262
BspDI	ATCGAT	1 cut(s)	228
BspFNI	CGCG	2 cut(s)	20, 237
BspHI	TCATGA	1 cut(s)	120
BspLI	GGNNCC	1 cut(s)	36
BsrDI	GCAATG	1 cut(s)	399
BsrFI	RCCGGY	1 cut(s)	49
BsrI	ACTGG	2 cut(s)	271, 393
BssAI	RCCGGY	1 cut(s)	49
BssECI	CCNNGG	1 cut(s)	160
BssMI	GATC	2 cut(s)	117, 130
BssNI	GRCGYC	1 cut(s)	240
Bst4CI	ACNGT	1 cut(s)	307
BstACI	GRCGYC	1 cut(s)	240
BstDEI	CTNAG	1 cut(s)	249
BstF5I	GGATG	1 cut(s)	198
BstFNI	CGCG	2 cut(s)	20, 237
BstHHI	GCGC	1 cut(s)	421
BstKTI	GATC	2 cut(s)	120, 133
BstMAI	GTCTC	1 cut(s)	351
BstMBI	GATC	2 cut(s)	117, 130
BstMCI	CGRYCG	1 cut(s)	50
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 435
BstSCI	CCNGG	1 cut(s)	499
BstUI	CGCG	2 cut(s)	20, 237
BstV1I	GCAGC	1 cut(s)	17
Bsu15I	ATCGAT	1 cut(s)	228
BsuRI	GGCC	1 cut(s)	212
BsuTUI	ATCGAT	1 cut(s)	228
BtsCI	GGATG	1 cut(s)	198
BtsIMutI	CAGTG	1 cut(s)	264
BtuMI	TCGCGA	1 cut(s)	237
CciI	TCATGA	1 cut(s)	120
CfoI	GCGC	1 cut(s)	421
Cfr10I	RCCGGY	1 cut(s)	49
ClaI	ATCGAT	1 cut(s)	228
CspAI	ACCGGT	1 cut(s)	49
CviAII	CATG	4 cut(s)	121, 280, 406, 512
DdeI	CTNAG	1 cut(s)	249
DpnI	GATC	2 cut(s)	119, 132
DpnII	GATC	2 cut(s)	117, 130
EaeI	YGGCCR	1 cut(s)	210
EciI	GGCGGA	1 cut(s)	184
Ecl136II	GAGCTC	1 cut(s)	154
Eco24I	GRGCYC	1 cut(s)	156
Eco32I	GATATC	1 cut(s)	457
Eco53kI	GAGCTC	1 cut(s)	154
Eco57I	CTGAAG	1 cut(s)	95
EcoICRI	GAGCTC	1 cut(s)	154
EcoRV	GATATC	1 cut(s)	457
EcoT38I	GRGCYC	1 cut(s)	156
FaeI	CATG	4 cut(s)	124, 283, 409, 515
FaiI	YATR	7 cut(s)	110, 122, 224, 281, 407, 513, 518
FatI	CATG	4 cut(s)	120, 279, 405, 511
FblI	GTMKAC	2 cut(s)	309, 534
Fnu4HI	GCNGC	4 cut(s)	6, 61, 64, 366
FokI	GGATG	1 cut(s)	185
FriOI	GRGCYC	1 cut(s)	156
Fsp4HI	GCNGC	4 cut(s)	6, 61, 64, 366
FspBI	CTAG	2 cut(s)	290, 467
GlaI	GCGC	1 cut(s)	420
GluI	GCNGC	4 cut(s)	6, 61, 64, 366
GsuI	CTGGAG	2 cut(s)	107, 304
HaeIII	GGCC	1 cut(s)	212
HapII	CCGG	2 cut(s)	50, 501
HhaI	GCGC	1 cut(s)	421
Hin1I	GRCGYC	1 cut(s)	240
Hin1II	CATG	4 cut(s)	124, 283, 409, 515
Hin6I	GCGC	1 cut(s)	419
HinP1I	GCGC	1 cut(s)	419
HincII	GTYRAC	1 cut(s)	310
HindII	GTYRAC	1 cut(s)	310
HinfI	GANTC	2 cut(s)	507, 520
HpaII	CCGG	2 cut(s)	50, 501
HphI	GGTGA	1 cut(s)	461
Hpy166II	GTNNAC	2 cut(s)	310, 535
Hpy188I	TCNGA	7 cut(s)	39, 103, 135, 161, 218, 461, 525
Hpy188III	TCNNGA	4 cut(s)	121, 184, 236, 321
Hpy8I	GTNNAC	2 cut(s)	310, 535
Hpy99I	CGWCG	3 cut(s)	242, 245, 311
HpyAV	CCTTC	1 cut(s)	70
HpyCH4III	ACNGT	1 cut(s)	307
HpyCH4IV	ACGT	1 cut(s)	240
HpyCH4V	TGCA	1 cut(s)	429
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 435
HpyF3I	CTNAG	1 cut(s)	249
HpySE526I	ACGT	1 cut(s)	240
Hsp92I	GRCGYC	1 cut(s)	240
Hsp92II	CATG	4 cut(s)	124, 283, 409, 515
HspAI	GCGC	1 cut(s)	419
Kzo9I	GATC	2 cut(s)	117, 130
LmnI	GCTCC	1 cut(s)	159
Lsp1109I	GCAGC	1 cut(s)	17
LweI	GCATC	1 cut(s)	174
MaeI	CTAG	2 cut(s)	290, 467
MaeII	ACGT	1 cut(s)	240
MalI	GATC	2 cut(s)	119, 132
MboI	GATC	2 cut(s)	117, 130
MhlI	GDGCHC	1 cut(s)	156
MluCI	AATT	1 cut(s)	359
MlyI	GAGTC	1 cut(s)	516
MmeI	TCCRAC	1 cut(s)	374
MspI	CCGG	2 cut(s)	50, 501
MspR9I	CCNGG	1 cut(s)	501
Mva1269I	GAATGC	1 cut(s)	421
MvnI	CGCG	2 cut(s)	20, 237
MwoI	GCNNNNNNNGC	2 cut(s)	11, 435
NciI	CCSGG	1 cut(s)	501
NdeII	GATC	2 cut(s)	117, 130
NlaIII	CATG	4 cut(s)	124, 283, 409, 515
NlaIV	GGNNCC	1 cut(s)	36
NruI	TCGCGA	1 cut(s)	237
PagI	TCATGA	1 cut(s)	120
PcsI	WCGNNNNNNNCGW	1 cut(s)	234
PctI	GAATGC	1 cut(s)	421
PfeI	GAWTC	1 cut(s)	520
PinAI	ACCGGT	1 cut(s)	49
PkrI	GCNGC	4 cut(s)	7, 62, 65, 367
PleI	GAGTC	1 cut(s)	515
PpsI	GAGTC	1 cut(s)	515
Psp124BI	GAGCTC	1 cut(s)	156
PspN4I	GGNNCC	1 cut(s)	36
RruI	TCGCGA	1 cut(s)	237
SacI	GAGCTC	1 cut(s)	156
SalI	GTCGAC	1 cut(s)	308
SatI	GCNGC	4 cut(s)	6, 61, 64, 366
Sau3AI	GATC	2 cut(s)	117, 130
SchI	GAGTC	1 cut(s)	516
ScrFI	CCNGG	1 cut(s)	501
SduI	GDGCHC	1 cut(s)	156
SfaNI	GCATC	1 cut(s)	174
SmlI	CTYRAG	1 cut(s)	143
SmoI	CTYRAG	1 cut(s)	143
Sse9I	AATT	1 cut(s)	359
SsiI	CCGC	5 cut(s)	18, 60, 63, 195, 365
SspI	AATATT	1 cut(s)	412
SspMI	CTAG	2 cut(s)	290, 467
SstI	GAGCTC	1 cut(s)	156
StyD4I	CCNGG	1 cut(s)	499
TaaI	ACNGT	1 cut(s)	307
TaiI	ACGT	1 cut(s)	243
TaqI	TCGA	5 cut(s)	129, 183, 228, 309, 543
TasI	AATT	1 cut(s)	359
TauI	GCSGC	3 cut(s)	63, 66, 368
TfiI	GAWTC	1 cut(s)	520
TscAI	CASTG	1 cut(s)	271
TseI	GCWGC	1 cut(s)	5
TspDTI	ATGAA	2 cut(s)	152, 422
TspGWI	ACGGA	1 cut(s)	489
TspRI	CASTG	1 cut(s)	271
XmiI	GTMKAC	2 cut(s)	309, 534
XspI	CTAG	2 cut(s)	290, 467
ZraI	GACGTC	1 cut(s)	241

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.