Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0017733

Physical Location & Seq

Genomic Coordinates Reverse (-)

2116428 .. 2117853

Gene Structure 1426 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G019300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGGCAGGGACATCAGAGAGACAGAGAAGCGGAATGGCATCGGACGAGAAGCTGGGGCGGGTGACGTCGGACGGACTAGAGCCAATTACGAGCTTTGATGAGATGGGGCTCAAGGACGATGTGCTTCGAGGCATCTACCAATACGGCTACGAGAAGCCCTCCGCCATCCAGCAACGGGCGGTCAGGAGCATTATCGGGGGACATGATGTGATAGCGCAAGCGCAGTCGGGTACCGGCAAGACCTCCATGATTGCCCTAAGCGTTTGCCACTTGGTGGACACCTCCTATCGAGACGTTCAAGCGTTGATATTGTGCCCTACGAGGGAATTGGCGGCACAGACTGAGAAGCTGATCTTAGGGGTTGGAAACTTCATAAACATACAAGTGCATGCTTGCGTTGGAGGAAAAAGTGTGGGTGAGGATATCAGAAAGCTTGAGCATGGAGTTCATGTGGTTTGCGGAACTCCTGGTAGAGTCTTTGACATGATCAAGAGGAGAACTCTGCGCACTCGAGCCATGAAATTATTAGTTCTTGACGAGTCTGATGAGATGTTAAGCAGAGGGTTCAAGGATCAGATTTACGATGTCTACCGATATCTTCCACCGGAGCTCCAGGTTTGCTTAGTTTCTGCTACACTTGCTCATGAAACCTTGGAGATGACCAAGAAGTTTATGACTGACCCTGTGAGGATACCTGCCCAACGTGAGATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003729 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009628 GO:0009987 GO:0010467 GO:0010468 GO:0010501 GO:0016020 GO:0016070 GO:0016462 GO:0016604 GO:0016607 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0035145 GO:0036293 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0050789 GO:0050896 GO:0060255 GO:0065007 GO:0070013 GO:0070035 GO:0070482 GO:0071013 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03040 map03013 map03015 map03040

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

238

Amino Acids

26.28

Weight (kDa)

7.01

Isoelectric Point (pI)

30.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017733)

Species	Orthologous Gene IDs
malus_domestica	MD09G1268100.v1.1
prunus_persica	Prupe.5G019300_v2.0.a1
pyrus_communis	pycom13g00570
rosa_chinensis	RchiOBHm_Chr0c44g0503471 RchiOBHm_Chr0c44g0503481 RchiOBHm_Chr0c44g0503571 RchiOBHm_Chr0c44g0503761 RchiOBHm_Chr0c44g0503771 RchiOBHm_Chr4g0386201 RchiOBHm_Chr4g0386211 RchiOBHm_Chr4g0386351
rosa_samantha	Rh2DG639600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	68
Acc16I	TGCGCA	1 cut(s)	506
Acc36I	ACCTGC	1 cut(s)	703
Acc65I	GGTACC	1 cut(s)	230
AccB1I	GGYRCC	1 cut(s)	230
AccB7I	CCANNNNNTGG	1 cut(s)	274
AccI	GTMKAC	1 cut(s)	588
AciI	CCGC	6 cut(s)	30, 58, 162, 179, 332, 459
AclWI	GGATC	1 cut(s)	579
AcyI	GRCGYC	1 cut(s)	65
AdeI	CACNNNGTG	1 cut(s)	274
AfaI	GTAC	1 cut(s)	232
AfiI	CCNNNNNNNGG	3 cut(s)	175, 274, 322
AgsI	TTSAA	2 cut(s)	299, 568
AjnI	CCWGG	2 cut(s)	466, 612
AluBI	AGCT	5 cut(s)	52, 93, 349, 433, 610
AluI	AGCT	5 cut(s)	52, 93, 349, 433, 610
Alw21I	GWGCWC	1 cut(s)	612
Alw26I	GTCTC	2 cut(s)	13, 285
AlwI	GGATC	1 cut(s)	579
Ama87I	CYCGRG	1 cut(s)	510
Asp718I	GGTACC	1 cut(s)	230
AspLEI	GCGC	3 cut(s)	217, 223, 507
AsuHPI	GGTGA	2 cut(s)	73, 428
AvaI	CYCGRG	1 cut(s)	510
BaeGI	GKGCMC	1 cut(s)	317
BanI	GGYRCC	1 cut(s)	230
BanII	GRGCYC	2 cut(s)	111, 612
Bbv12I	GWGCWC	1 cut(s)	612
BccI	CCATC	2 cut(s)	97, 173
BceAI	ACGGC	1 cut(s)	160
BciT130I	CCWGG	2 cut(s)	468, 614
BciVI	GTATCC	1 cut(s)	684
BclI	TGATCA	1 cut(s)	486
BcoDI	GTCTC	2 cut(s)	13, 285
BfaI	CTAG	1 cut(s)	77
BfuAI	ACCTGC	1 cut(s)	703
BfuI	GTATCC	1 cut(s)	684
BisI	GCNGC	1 cut(s)	333
BlsI	GCNGC	1 cut(s)	334
Bme1390I	CCNGG	2 cut(s)	468, 614
BmeT110I	CYCGRG	1 cut(s)	510
BmiI	GGNNCC	1 cut(s)	232
BmrFI	CCNGG	2 cut(s)	468, 614
BmsI	GCATC	2 cut(s)	47, 141
BplI	GAGNNNNNCTC	4 cut(s)	143, 175, 484, 516
BpmI	CTGGAG	1 cut(s)	596
Bpu10I	CCTNAGC	1 cut(s)	257
BpuEI	CTTGAG	2 cut(s)	95, 455
BsaHI	GRCGYC	1 cut(s)	65
BsaJI	CCNNGG	1 cut(s)	651
BsaWI	WCCGGW	1 cut(s)	604
BsaXI	ACNNNNNCTCC	4 cut(s)	435, 465, 594, 624
Bsc4I	CCNNNNNNNGG	3 cut(s)	175, 274, 322
Bse118I	RCCGGY	1 cut(s)	233
BseBI	CCWGG	2 cut(s)	468, 614
BseDI	CCNNGG	1 cut(s)	651
BseGI	GGATG	1 cut(s)	165
BseLI	CCNNNNNNNGG	3 cut(s)	175, 274, 322
BseMII	CTCAG	1 cut(s)	333
BseRI	GAGGAG	1 cut(s)	508
BseSI	GKGCMC	1 cut(s)	317
BseYI	CCCAGC	1 cut(s)	52
BshNI	GGYRCC	1 cut(s)	230
BsiHKAI	GWGCWC	1 cut(s)	612
BsiHKCI	CYCGRG	1 cut(s)	510
BsiSI	CCGG	2 cut(s)	234, 605
BslFI	GGGAC	2 cut(s)	22, 213
BslI	CCNNNNNNNGG	3 cut(s)	175, 274, 322
BsmAI	GTCTC	2 cut(s)	13, 285
BsmBI	CGTCTC	1 cut(s)	285
BsmFI	GGGAC	2 cut(s)	22, 213
BsoBI	CYCGRG	1 cut(s)	510
Bsp1286I	GDGCHC	3 cut(s)	111, 317, 612
Bsp143I	GATC	3 cut(s)	351, 486, 571
BspACI	CCGC	6 cut(s)	30, 58, 162, 179, 332, 459
BspCNI	CTCAG	1 cut(s)	334
BspHI	TCATGA	1 cut(s)	643
BspLI	GGNNCC	1 cut(s)	232
BspMI	ACCTGC	1 cut(s)	703
BspPI	GGATC	1 cut(s)	579
BspT107I	GGYRCC	1 cut(s)	230
BsrFI	RCCGGY	1 cut(s)	233
BssAI	RCCGGY	1 cut(s)	233
BssECI	CCNNGG	1 cut(s)	651
BssMI	GATC	3 cut(s)	351, 486, 571
BssNI	GRCGYC	1 cut(s)	65
BssT1I	CCWWGG	1 cut(s)	651
Bst2UI	CCWGG	2 cut(s)	468, 614
BstACI	GRCGYC	1 cut(s)	65
BstC8I	GCNNGC	3 cut(s)	219, 390, 394
BstDEI	CTNAG	4 cut(s)	257, 342, 355, 622
BstF5I	GGATG	1 cut(s)	165
BstHHI	GCGC	3 cut(s)	217, 223, 507
BstKTI	GATC	3 cut(s)	354, 489, 574
BstMAI	GTCTC	2 cut(s)	13, 285
BstMBI	GATC	3 cut(s)	351, 486, 571
BstMWI	GCNNNNNNNGC	1 cut(s)	638
BstNI	CCWGG	2 cut(s)	468, 614
BstNSI	RCATGY	1 cut(s)	392
BstSCI	CCNGG	2 cut(s)	466, 612
BstSLI	GKGCMC	1 cut(s)	317
BsuI	GTATCC	1 cut(s)	684
BtsCI	GGATG	1 cut(s)	165
BveI	ACCTGC	1 cut(s)	703
Cac8I	GCNNGC	3 cut(s)	219, 390, 394
CciI	TCATGA	1 cut(s)	643
CfoI	GCGC	3 cut(s)	217, 223, 507
Cfr10I	RCCGGY	1 cut(s)	233
Csp6I	GTAC	1 cut(s)	231
CviAII	CATG	8 cut(s)	203, 247, 389, 440, 449, 484, 517, 644
CviQI	GTAC	1 cut(s)	231
DdeI	CTNAG	4 cut(s)	257, 342, 355, 622
DpnI	GATC	3 cut(s)	353, 488, 573
DpnII	GATC	3 cut(s)	351, 486, 571
DraIII	CACNNNGTG	1 cut(s)	274
EciI	GGCGGA	1 cut(s)	151
Ecl136II	GAGCTC	1 cut(s)	610
Eco130I	CCWWGG	1 cut(s)	651
Eco24I	GRGCYC	2 cut(s)	111, 612
Eco32I	GATATC	2 cut(s)	424, 596
Eco53kI	GAGCTC	1 cut(s)	610
Eco88I	CYCGRG	1 cut(s)	510
EcoICRI	GAGCTC	1 cut(s)	610
EcoRII	CCWGG	2 cut(s)	466, 612
EcoRV	GATATC	2 cut(s)	424, 596
EcoT14I	CCWWGG	1 cut(s)	651
EcoT38I	GRGCYC	2 cut(s)	111, 612
ErhI	CCWWGG	1 cut(s)	651
Esp3I	CGTCTC	1 cut(s)	285
FaeI	CATG	8 cut(s)	206, 250, 392, 443, 452, 487, 520, 647
FalI	AAGNNNNNCTT	2 cut(s)	338, 370
FaqI	GGGAC	2 cut(s)	22, 213
FatI	CATG	8 cut(s)	202, 246, 388, 439, 448, 483, 516, 643
FauI	CCCGC	1 cut(s)	51
FbaI	TGATCA	1 cut(s)	486
FblI	GTMKAC	1 cut(s)	588
Fnu4HI	GCNGC	1 cut(s)	333
FokI	GGATG	1 cut(s)	152
FriOI	GRGCYC	2 cut(s)	111, 612
Fsp4HI	GCNGC	1 cut(s)	333
FspBI	CTAG	1 cut(s)	77
FspI	TGCGCA	1 cut(s)	506
GlaI	GCGC	3 cut(s)	216, 222, 506
GluI	GCNGC	1 cut(s)	333
GsaI	CCCAGC	1 cut(s)	56
GsuI	CTGGAG	1 cut(s)	596
HapII	CCGG	2 cut(s)	234, 605
HhaI	GCGC	3 cut(s)	217, 223, 507
Hin1I	GRCGYC	1 cut(s)	65
Hin1II	CATG	8 cut(s)	206, 250, 392, 443, 452, 487, 520, 647
Hin6I	GCGC	3 cut(s)	215, 221, 505
HinP1I	GCGC	3 cut(s)	215, 221, 505
HindIII	AAGCTT	1 cut(s)	431
HinfI	GANTC	2 cut(s)	474, 539
HpaII	CCGG	2 cut(s)	234, 605
HphI	GGTGA	2 cut(s)	73, 428
Hpy166II	GTNNAC	2 cut(s)	277, 589
Hpy188I	TCNGA	6 cut(s)	16, 43, 70, 428, 544, 576
Hpy188III	TCNNGA	5 cut(s)	184, 290, 490, 533, 644
Hpy8I	GTNNAC	2 cut(s)	277, 589
Hpy99I	CGWCG	1 cut(s)	70
HpyCH4IV	ACGT	3 cut(s)	65, 294, 703
HpyCH4V	TGCA	1 cut(s)	388
HpyF10VI	GCNNNNNNNGC	1 cut(s)	638
HpyF3I	CTNAG	4 cut(s)	257, 342, 355, 622
HpySE526I	ACGT	3 cut(s)	65, 294, 703
Hsp92I	GRCGYC	1 cut(s)	65
Hsp92II	CATG	8 cut(s)	206, 250, 392, 443, 452, 487, 520, 647
HspAI	GCGC	3 cut(s)	215, 221, 505
KpnI	GGTACC	1 cut(s)	234
Ksp22I	TGATCA	1 cut(s)	486
Kzo9I	GATC	3 cut(s)	351, 486, 571
LmnI	GCTCC	3 cut(s)	186, 607, 615
LweI	GCATC	2 cut(s)	47, 141
MaeI	CTAG	1 cut(s)	77
MaeII	ACGT	3 cut(s)	65, 294, 703
MaeIII	GTNAC	1 cut(s)	61
MalI	GATC	3 cut(s)	353, 488, 573
MboI	GATC	3 cut(s)	351, 486, 571
MboII	GAAGA	1 cut(s)	590
MhlI	GDGCHC	3 cut(s)	111, 317, 612
MluCI	AATT	3 cut(s)	84, 326, 521
MlyI	GAGTC	2 cut(s)	483, 548
MmeI	TCCRAC	3 cut(s)	48, 343, 379
MseI	TTAA	2 cut(s)	554, 712
MslI	CAYNNNNRTG	1 cut(s)	383
MspI	CCGG	2 cut(s)	234, 605
MspR9I	CCNGG	2 cut(s)	468, 614
MvaI	CCWGG	2 cut(s)	468, 614
MwoI	GCNNNNNNNGC	1 cut(s)	638
NdeII	GATC	3 cut(s)	351, 486, 571
NlaIII	CATG	8 cut(s)	206, 250, 392, 443, 452, 487, 520, 647
NlaIV	GGNNCC	1 cut(s)	232
NmuCI	GTSAC	1 cut(s)	61
NsbI	TGCGCA	1 cut(s)	506
NspI	RCATGY	1 cut(s)	392
PaeI	GCATGC	1 cut(s)	392
PaeR7I	CTCGAG	1 cut(s)	510
PagI	TCATGA	1 cut(s)	643
PflMI	CCANNNNNTGG	1 cut(s)	274
PkrI	GCNGC	1 cut(s)	334
PleI	GAGTC	2 cut(s)	482, 547
PpsI	GAGTC	2 cut(s)	482, 547
Psp124BI	GAGCTC	1 cut(s)	612
Psp6I	CCWGG	2 cut(s)	466, 612
PspFI	CCCAGC	1 cut(s)	52
PspGI	CCWGG	2 cut(s)	466, 612
PspN4I	GGNNCC	1 cut(s)	232
PspXI	VCTCGAGB	1 cut(s)	510
RsaI	GTAC	1 cut(s)	232
RsaNI	GTAC	1 cut(s)	231
RseI	CAYNNNNRTG	1 cut(s)	383
SacI	GAGCTC	1 cut(s)	612
SaqAI	TTAA	2 cut(s)	554, 712
SatI	GCNGC	1 cut(s)	333
Sau3AI	GATC	3 cut(s)	351, 486, 571
SchI	GAGTC	2 cut(s)	483, 548
ScrFI	CCNGG	2 cut(s)	468, 614
SduI	GDGCHC	3 cut(s)	111, 317, 612
SfaNI	GCATC	2 cut(s)	47, 141
Sfr274I	CTCGAG	1 cut(s)	510
SlaI	CTCGAG	1 cut(s)	510
SmiMI	CAYNNNNRTG	1 cut(s)	383
SmlI	CTYRAG	3 cut(s)	110, 434, 510
SmoI	CTYRAG	3 cut(s)	110, 434, 510
SphI	GCATGC	1 cut(s)	392
Sse9I	AATT	3 cut(s)	84, 326, 521
SsiI	CCGC	6 cut(s)	30, 58, 162, 179, 332, 459
SspMI	CTAG	1 cut(s)	77
SstI	GAGCTC	1 cut(s)	612
StyD4I	CCNGG	2 cut(s)	466, 612
StyI	CCWWGG	1 cut(s)	651
TaiI	ACGT	3 cut(s)	68, 297, 706
TaqI	TCGA	3 cut(s)	127, 289, 511
TasI	AATT	3 cut(s)	84, 326, 521
TauI	GCSGC	1 cut(s)	335
Tru1I	TTAA	2 cut(s)	554, 712
Tru9I	TTAA	2 cut(s)	554, 712
TseFI	GTSAC	1 cut(s)	61
Tsp45I	GTSAC	1 cut(s)	61
TspDTI	ATGAA	4 cut(s)	361, 437, 533, 660
TspGWI	ACGGA	1 cut(s)	87
Van91I	CCANNNNNTGG	1 cut(s)	274
XceI	RCATGY	1 cut(s)	392
XhoI	CTCGAG	1 cut(s)	510
XmiI	GTMKAC	1 cut(s)	588
XspI	CTAG	1 cut(s)	77
ZraI	GACGTC	1 cut(s)	66

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.