Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0017733

Physical Location & Seq

Genomic Coordinates Forward (+)

1746952 .. 1747757

Gene Structure 806 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ35959

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGAACCTCAAGGACGAGCTCCTCCGAGGCATCTACAACTACAGCTTCGAGAAGCCCTCCGCCATCCAGCAAAGGGCCATCAGACCCATAGTCGAGGGCCGCGACGTCGTAGCTCAGGCTCAATCTGGCACTGGAAAGACCTCCATGATTGCCCTAGCTTCTTGCCAAACCGTCGACACCTCCTCCAGAGAGGTTCAGGTGTTGATATTGTCTCCAACGAGGGAATTGGCGGCACAGATAGAGAAAGTGATACTGGCAATGGGAAACTACATGAGTATTCAAGCGCATTCCTGCATTGGAGGCAAAAGCGTGGGTGAGGATATCAGAAAGCTAGAAAACGGAGTTCAGGTGGTGTCTGGAACTCCCGGTAGAGTCCATGACATGATTCAGAGGGAAGTCTACTCACTCGACACATCAAACTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003729 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009628 GO:0009987 GO:0010467 GO:0010468 GO:0010501 GO:0016020 GO:0016070 GO:0016462 GO:0016604 GO:0016607 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0035145 GO:0036293 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0050789 GO:0050896 GO:0060255 GO:0065007 GO:0070013 GO:0070035 GO:0070482 GO:0071013 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03040 map03013 map03015 map03040

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

141

Amino Acids

15.43

Weight (kDa)

6.73

Isoelectric Point (pI)

27.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	21 - 132	9.4e-30	DEAD/DEAH box helicase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017733)

Species	Orthologous Gene IDs
malus_domestica	MD09G1268100.v1.1
prunus_persica	Prupe.5G019300_v2.0.a1
pyrus_communis	pycom13g00570
rosa_chinensis	RchiOBHm_Chr0c44g0503471 RchiOBHm_Chr0c44g0503481 RchiOBHm_Chr0c44g0503571 RchiOBHm_Chr0c44g0503761 RchiOBHm_Chr0c44g0503771 RchiOBHm_Chr4g0386201 RchiOBHm_Chr4g0386211 RchiOBHm_Chr4g0386351
rosa_samantha	Rh2DG639600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	108
AccI	GTMKAC	2 cut(s)	174, 399
AccII	CGCG	1 cut(s)	102
AciI	CCGC	3 cut(s)	60, 100, 230
AcyI	GRCGYC	1 cut(s)	105
AfiI	CCNNNNNNNGG	1 cut(s)	73
AgsI	TTSAA	1 cut(s)	281
AhdI	GACNNNNNGTC	1 cut(s)	89
AluBI	AGCT	5 cut(s)	19, 45, 113, 158, 331
AluI	AGCT	5 cut(s)	19, 45, 113, 158, 331
Alw21I	GWGCWC	1 cut(s)	21
Alw26I	GTCTC	1 cut(s)	216
AoxI	GGCC	2 cut(s)	75, 97
AspLEI	GCGC	1 cut(s)	286
AspS9I	GGNCC	2 cut(s)	75, 97
AsuC2I	CCSGG	1 cut(s)	366
AsuHPI	GGTGA	1 cut(s)	326
BanII	GRGCYC	1 cut(s)	21
Bbv12I	GWGCWC	1 cut(s)	21
BccI	CCATC	2 cut(s)	71, 86
BcnI	CCSGG	1 cut(s)	366
BcoDI	GTCTC	1 cut(s)	216
BfaI	CTAG	2 cut(s)	155, 332
BfmI	CTRYAG	1 cut(s)	40
BisI	GCNGC	2 cut(s)	100, 231
BlsI	GCNGC	2 cut(s)	101, 232
Bme1390I	CCNGG	1 cut(s)	366
BmeRI	GACNNNNNGTC	1 cut(s)	89
BmgT120I	GGNCC	2 cut(s)	75, 97
BmrFI	CCNGG	1 cut(s)	366
BmsI	GCATC	1 cut(s)	39
BplI	GAGNNNNNCTC	2 cut(s)	41, 73
BpmI	CTGGAG	1 cut(s)	169
Bpu10I	CCTNAGC	1 cut(s)	114
BpuMI	CCSGG	1 cut(s)	366
BsaHI	GRCGYC	1 cut(s)	105
BsaJI	CCNNGG	1 cut(s)	25
BsaXI	ACNNNNNCTCC	4 cut(s)	167, 197, 333, 363
Bsc4I	CCNNNNNNNGG	1 cut(s)	73
Bse1I	ACTGG	2 cut(s)	136, 258
Bse3DI	GCAATG	1 cut(s)	264
BseDI	CCNNGG	1 cut(s)	25
BseGI	GGATG	1 cut(s)	63
BseLI	CCNNNNNNNGG	1 cut(s)	73
BseMI	GCAATG	1 cut(s)	264
BseMII	CTCAG	1 cut(s)	128
BseNI	ACTGG	2 cut(s)	136, 258
BseRI	GAGGAG	2 cut(s)	11, 172
Bsh1236I	CGCG	1 cut(s)	102
BshFI	GGCC	2 cut(s)	77, 99
BsiHKAI	GWGCWC	1 cut(s)	21
BsiSI	CCGG	1 cut(s)	366
BslI	CCNNNNNNNGG	1 cut(s)	73
BsmAI	GTCTC	1 cut(s)	216
BsmI	GAATGC	1 cut(s)	286
BsnI	GGCC	2 cut(s)	77, 99
Bsp1286I	GDGCHC	1 cut(s)	21
BspACI	CCGC	3 cut(s)	60, 100, 230
BspANI	GGCC	2 cut(s)	77, 99
BspCNI	CTCAG	1 cut(s)	127
BspFNI	CGCG	1 cut(s)	102
BsrDI	GCAATG	1 cut(s)	264
BsrI	ACTGG	2 cut(s)	136, 258
BssECI	CCNNGG	1 cut(s)	25
BssNI	GRCGYC	1 cut(s)	105
Bst4CI	ACNGT	1 cut(s)	172
BstACI	GRCGYC	1 cut(s)	105
BstDEI	CTNAG	1 cut(s)	114
BstF5I	GGATG	1 cut(s)	63
BstFNI	CGCG	1 cut(s)	102
BstHHI	GCGC	1 cut(s)	286
BstMAI	GTCTC	1 cut(s)	216
BstMWI	GCNNNNNNNGC	1 cut(s)	300
BstSCI	CCNGG	1 cut(s)	364
BstSFI	CTRYAG	1 cut(s)	40
BstUI	CGCG	1 cut(s)	102
BsuRI	GGCC	2 cut(s)	77, 99
BtsCI	GGATG	1 cut(s)	63
BtsIMutI	CAGTG	1 cut(s)	129
CfoI	GCGC	1 cut(s)	286
Cfr13I	GGNCC	2 cut(s)	75, 97
CviAII	CATG	4 cut(s)	145, 271, 377, 382
CviJI	RGCY	9 cut(s)	19, 45, 55, 77, 99, 113, 119, 158, 331
CviKI_1	RGCY	9 cut(s)	19, 45, 55, 77, 99, 113, 119, 158, 331
DdeI	CTNAG	1 cut(s)	114
DriI	GACNNNNNGTC	1 cut(s)	89
Eam1105I	GACNNNNNGTC	1 cut(s)	89
EciI	GGCGGA	1 cut(s)	49
Ecl136II	GAGCTC	1 cut(s)	19
Eco24I	GRGCYC	1 cut(s)	21
Eco32I	GATATC	1 cut(s)	322
Eco53kI	GAGCTC	1 cut(s)	19
EcoICRI	GAGCTC	1 cut(s)	19
EcoRV	GATATC	1 cut(s)	322
EcoT38I	GRGCYC	1 cut(s)	21
FaeI	CATG	4 cut(s)	148, 274, 380, 385
FaiI	YATR	5 cut(s)	89, 146, 272, 378, 383
FatI	CATG	4 cut(s)	144, 270, 376, 381
FblI	GTMKAC	2 cut(s)	174, 399
Fnu4HI	GCNGC	2 cut(s)	100, 231
FokI	GGATG	1 cut(s)	50
FriOI	GRGCYC	1 cut(s)	21
Fsp4HI	GCNGC	2 cut(s)	100, 231
FspBI	CTAG	2 cut(s)	155, 332
GlaI	GCGC	1 cut(s)	285
GluI	GCNGC	2 cut(s)	100, 231
GsuI	CTGGAG	1 cut(s)	169
HaeIII	GGCC	2 cut(s)	77, 99
HapII	CCGG	1 cut(s)	366
HhaI	GCGC	1 cut(s)	286
Hin1I	GRCGYC	1 cut(s)	105
Hin1II	CATG	4 cut(s)	148, 274, 380, 385
Hin6I	GCGC	1 cut(s)	284
HinP1I	GCGC	1 cut(s)	284
HincII	GTYRAC	1 cut(s)	175
HindII	GTYRAC	1 cut(s)	175
HinfI	GANTC	2 cut(s)	372, 385
HpaII	CCGG	1 cut(s)	366
HphI	GGTGA	1 cut(s)	326
Hpy166II	GTNNAC	2 cut(s)	175, 400
Hpy188I	TCNGA	4 cut(s)	26, 83, 326, 390
Hpy188III	TCNNGA	3 cut(s)	49, 186, 357
Hpy8I	GTNNAC	2 cut(s)	175, 400
Hpy99I	CGWCG	3 cut(s)	107, 110, 176
HpyCH4III	ACNGT	1 cut(s)	172
HpyCH4IV	ACGT	1 cut(s)	105
HpyCH4V	TGCA	1 cut(s)	294
HpyF10VI	GCNNNNNNNGC	1 cut(s)	300
HpyF3I	CTNAG	1 cut(s)	114
HpySE526I	ACGT	1 cut(s)	105
Hsp92I	GRCGYC	1 cut(s)	105
Hsp92II	CATG	4 cut(s)	148, 274, 380, 385
HspAI	GCGC	1 cut(s)	284
LmnI	GCTCC	1 cut(s)	24
LweI	GCATC	1 cut(s)	39
MaeI	CTAG	2 cut(s)	155, 332
MaeII	ACGT	1 cut(s)	105
MhlI	GDGCHC	1 cut(s)	21
MluCI	AATT	1 cut(s)	224
MlyI	GAGTC	1 cut(s)	381
MmeI	TCCRAC	1 cut(s)	239
MspI	CCGG	1 cut(s)	366
MspR9I	CCNGG	1 cut(s)	366
Mva1269I	GAATGC	1 cut(s)	286
MvnI	CGCG	1 cut(s)	102
MwoI	GCNNNNNNNGC	1 cut(s)	300
NciI	CCSGG	1 cut(s)	366
NlaIII	CATG	4 cut(s)	148, 274, 380, 385
PcsI	WCGNNNNNNNCGW	1 cut(s)	99
PctI	GAATGC	1 cut(s)	286
PfeI	GAWTC	1 cut(s)	385
PkrI	GCNGC	2 cut(s)	101, 232
PleI	GAGTC	1 cut(s)	380
PpsI	GAGTC	1 cut(s)	380
Psp124BI	GAGCTC	1 cut(s)	21
PspPI	GGNCC	2 cut(s)	75, 97
SacI	GAGCTC	1 cut(s)	21
SalI	GTCGAC	1 cut(s)	173
SatI	GCNGC	2 cut(s)	100, 231
Sau96I	GGNCC	2 cut(s)	75, 97
SchI	GAGTC	1 cut(s)	381
ScrFI	CCNGG	1 cut(s)	366
SduI	GDGCHC	1 cut(s)	21
SfaNI	GCATC	1 cut(s)	39
SfcI	CTRYAG	1 cut(s)	40
SmlI	CTYRAG	1 cut(s)	8
SmoI	CTYRAG	1 cut(s)	8
Sse9I	AATT	1 cut(s)	224
SsiI	CCGC	3 cut(s)	60, 100, 230
SspMI	CTAG	2 cut(s)	155, 332
SstI	GAGCTC	1 cut(s)	21
StyD4I	CCNGG	1 cut(s)	364
TaaI	ACNGT	1 cut(s)	172
TaiI	ACGT	1 cut(s)	108
TaqI	TCGA	4 cut(s)	48, 93, 174, 408
TasI	AATT	1 cut(s)	224
TauI	GCSGC	2 cut(s)	102, 233
TfiI	GAWTC	1 cut(s)	385
TscAI	CASTG	1 cut(s)	136
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	354
TspRI	CASTG	1 cut(s)	136
XmiI	GTMKAC	2 cut(s)	174, 399
XspI	CTAG	2 cut(s)	155, 332
ZraI	GACGTC	1 cut(s)	106

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.