Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0017733

Physical Location & Seq

Genomic Coordinates Reverse (-)

1844695 .. 1845569

Gene Structure 875 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ35971

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGGCAGAAATAGCAACCGCGAGAGCGAGCGTGGTTCCGATGACCCGACCGGTTCAGGGCGGCGGCAAGGTGCTGAAGGAGAAGCTGGAGTTTGTGCCGTCAGATGATATAAAGCCGATCATGAGCTTCGATCAGATGAACCTCAAGGACGAGCTCCTCCGAGGCATCTACAACTACGGCTTCGAGAAGCCCTCCGCCATCCAGCAAAGGGCCATCAGACCCATAATCGAGGGCTGTGACGTCATAGCTCAGGCTCAATCTAGCATTGGAAAGACCTCCATGATTGCCCTAGCTTCTTGCCAAACCGTCGACACCTCCTCCAGAGAGGTTCAGGTGTTGATATTGTCTCCAACGAGGGAATTGGCGACACAGACAGAGAAAGTGATACTGGCAATGGGAAACTACATGAGTATTCAAGCGCATTCCTGCATTGGAGGCAAAAGCGTGGGTGAGGATATCAGAAAGCTAGAAAACAGAGTTCAGGTGGTGTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003729 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009628 GO:0009987 GO:0010467 GO:0010468 GO:0010501 GO:0016020 GO:0016070 GO:0016462 GO:0016604 GO:0016607 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0035145 GO:0036293 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0050789 GO:0050896 GO:0060255 GO:0065007 GO:0070013 GO:0070035 GO:0070482 GO:0071013 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03040 map03013 map03015 map03040

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

164

Amino Acids

17.88

Weight (kDa)

7.68

Isoelectric Point (pI)

40.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	66 - 163	3.5e-21	DEAD/DEAH box helicase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017733)

Species	Orthologous Gene IDs
malus_domestica	MD09G1268100.v1.1
prunus_persica	Prupe.5G019300_v2.0.a1
pyrus_communis	pycom13g00570
rosa_chinensis	RchiOBHm_Chr0c44g0503471 RchiOBHm_Chr0c44g0503481 RchiOBHm_Chr0c44g0503571 RchiOBHm_Chr0c44g0503761 RchiOBHm_Chr0c44g0503771 RchiOBHm_Chr4g0386201 RchiOBHm_Chr4g0386211 RchiOBHm_Chr4g0386351
rosa_samantha	Rh2DG639600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	243
AccI	GTMKAC	1 cut(s)	309
AccII	CGCG	1 cut(s)	20
AciI	CCGC	4 cut(s)	18, 60, 63, 195
AcuI	CTGAAG	1 cut(s)	95
AcyI	GRCGYC	1 cut(s)	240
AfiI	CCNNNNNNNGG	2 cut(s)	56, 208
AgeI	ACCGGT	1 cut(s)	49
AgsI	TTSAA	1 cut(s)	416
AluBI	AGCT	6 cut(s)	85, 126, 154, 248, 293, 466
AluI	AGCT	6 cut(s)	85, 126, 154, 248, 293, 466
Alw21I	GWGCWC	1 cut(s)	156
Alw26I	GTCTC	1 cut(s)	351
AoxI	GGCC	1 cut(s)	210
AsiGI	ACCGGT	1 cut(s)	49
AspLEI	GCGC	1 cut(s)	421
AspS9I	GGNCC	1 cut(s)	210
AsuHPI	GGTGA	1 cut(s)	461
BanII	GRGCYC	1 cut(s)	156
Bbv12I	GWGCWC	1 cut(s)	156
BccI	CCATC	2 cut(s)	206, 221
BceAI	ACGGC	2 cut(s)	82, 193
BcoDI	GTCTC	1 cut(s)	351
BfaI	CTAG	3 cut(s)	261, 290, 467
BisI	GCNGC	2 cut(s)	61, 64
BlsI	GCNGC	2 cut(s)	62, 65
BmgT120I	GGNCC	1 cut(s)	210
BmiI	GGNNCC	1 cut(s)	36
BmsI	GCATC	1 cut(s)	174
BplI	GAGNNNNNCTC	2 cut(s)	176, 208
BpmI	CTGGAG	2 cut(s)	107, 304
Bpu10I	CCTNAGC	1 cut(s)	249
BpuEI	CTTGAG	1 cut(s)	128
BsaHI	GRCGYC	1 cut(s)	240
BsaJI	CCNNGG	1 cut(s)	160
BsaWI	WCCGGW	1 cut(s)	49
BsaXI	ACNNNNNCTCC	2 cut(s)	302, 332
Bsc4I	CCNNNNNNNGG	2 cut(s)	56, 208
Bse118I	RCCGGY	1 cut(s)	49
Bse1I	ACTGG	1 cut(s)	393
Bse3DI	GCAATG	1 cut(s)	399
BseDI	CCNNGG	1 cut(s)	160
BseGI	GGATG	1 cut(s)	198
BseLI	CCNNNNNNNGG	2 cut(s)	56, 208
BseMI	GCAATG	1 cut(s)	399
BseMII	CTCAG	1 cut(s)	263
BseNI	ACTGG	1 cut(s)	393
BseRI	GAGGAG	2 cut(s)	146, 307
Bsh1236I	CGCG	1 cut(s)	20
Bsh1285I	CGRYCG	1 cut(s)	50
BshFI	GGCC	1 cut(s)	212
BshTI	ACCGGT	1 cut(s)	49
BsiEI	CGRYCG	1 cut(s)	50
BsiHKAI	GWGCWC	1 cut(s)	156
BsiSI	CCGG	1 cut(s)	50
BslI	CCNNNNNNNGG	2 cut(s)	56, 208
BsmAI	GTCTC	1 cut(s)	351
BsmI	GAATGC	1 cut(s)	421
BsnI	GGCC	1 cut(s)	212
Bsp1286I	GDGCHC	1 cut(s)	156
Bsp143I	GATC	2 cut(s)	117, 130
BspACI	CCGC	4 cut(s)	18, 60, 63, 195
BspANI	GGCC	1 cut(s)	212
BspCNI	CTCAG	1 cut(s)	262
BspFNI	CGCG	1 cut(s)	20
BspHI	TCATGA	2 cut(s)	120, 491
BspLI	GGNNCC	1 cut(s)	36
BsrDI	GCAATG	1 cut(s)	399
BsrFI	RCCGGY	1 cut(s)	49
BsrI	ACTGG	1 cut(s)	393
BssAI	RCCGGY	1 cut(s)	49
BssECI	CCNNGG	1 cut(s)	160
BssMI	GATC	2 cut(s)	117, 130
BssNI	GRCGYC	1 cut(s)	240
Bst4CI	ACNGT	1 cut(s)	307
BstACI	GRCGYC	1 cut(s)	240
BstC8I	GCNNGC	1 cut(s)	28
BstDEI	CTNAG	1 cut(s)	249
BstF5I	GGATG	1 cut(s)	198
BstFNI	CGCG	1 cut(s)	20
BstHHI	GCGC	1 cut(s)	421
BstKTI	GATC	2 cut(s)	120, 133
BstMAI	GTCTC	1 cut(s)	351
BstMBI	GATC	2 cut(s)	117, 130
BstMCI	CGRYCG	1 cut(s)	50
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 435
BstUI	CGCG	1 cut(s)	20
BsuRI	GGCC	1 cut(s)	212
BtsCI	GGATG	1 cut(s)	198
Cac8I	GCNNGC	1 cut(s)	28
CciI	TCATGA	2 cut(s)	120, 491
CfoI	GCGC	1 cut(s)	421
Cfr10I	RCCGGY	1 cut(s)	49
Cfr13I	GGNCC	1 cut(s)	210
CspAI	ACCGGT	1 cut(s)	49
CviAII	CATG	4 cut(s)	121, 280, 406, 492
DdeI	CTNAG	1 cut(s)	249
DpnI	GATC	2 cut(s)	119, 132
DpnII	GATC	2 cut(s)	117, 130
EciI	GGCGGA	1 cut(s)	184
Ecl136II	GAGCTC	1 cut(s)	154
Eco24I	GRGCYC	1 cut(s)	156
Eco32I	GATATC	1 cut(s)	457
Eco53kI	GAGCTC	1 cut(s)	154
Eco57I	CTGAAG	1 cut(s)	95
EcoICRI	GAGCTC	1 cut(s)	154
EcoRV	GATATC	1 cut(s)	457
EcoT38I	GRGCYC	1 cut(s)	156
FaeI	CATG	4 cut(s)	124, 283, 409, 495
FaiI	YATR	7 cut(s)	110, 122, 224, 245, 281, 407, 493
FatI	CATG	4 cut(s)	120, 279, 405, 491
FblI	GTMKAC	1 cut(s)	309
Fnu4HI	GCNGC	2 cut(s)	61, 64
FokI	GGATG	1 cut(s)	185
FriOI	GRGCYC	1 cut(s)	156
Fsp4HI	GCNGC	2 cut(s)	61, 64
FspBI	CTAG	3 cut(s)	261, 290, 467
GlaI	GCGC	1 cut(s)	420
GluI	GCNGC	2 cut(s)	61, 64
GsuI	CTGGAG	2 cut(s)	107, 304
HaeIII	GGCC	1 cut(s)	212
HapII	CCGG	1 cut(s)	50
HhaI	GCGC	1 cut(s)	421
Hin1I	GRCGYC	1 cut(s)	240
Hin1II	CATG	4 cut(s)	124, 283, 409, 495
Hin6I	GCGC	1 cut(s)	419
HinP1I	GCGC	1 cut(s)	419
HincII	GTYRAC	1 cut(s)	310
HindII	GTYRAC	1 cut(s)	310
HpaII	CCGG	1 cut(s)	50
HphI	GGTGA	1 cut(s)	461
Hpy166II	GTNNAC	1 cut(s)	310
Hpy188I	TCNGA	6 cut(s)	39, 103, 135, 161, 218, 461
Hpy188III	TCNNGA	4 cut(s)	121, 184, 321, 492
Hpy8I	GTNNAC	1 cut(s)	310
Hpy99I	CGWCG	1 cut(s)	311
HpyAV	CCTTC	1 cut(s)	70
HpyCH4III	ACNGT	1 cut(s)	307
HpyCH4IV	ACGT	1 cut(s)	240
HpyCH4V	TGCA	1 cut(s)	429
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 435
HpyF3I	CTNAG	1 cut(s)	249
HpySE526I	ACGT	1 cut(s)	240
Hsp92I	GRCGYC	1 cut(s)	240
Hsp92II	CATG	4 cut(s)	124, 283, 409, 495
HspAI	GCGC	1 cut(s)	419
Kzo9I	GATC	2 cut(s)	117, 130
LmnI	GCTCC	1 cut(s)	159
LweI	GCATC	1 cut(s)	174
MaeI	CTAG	3 cut(s)	261, 290, 467
MaeII	ACGT	1 cut(s)	240
MaeIII	GTNAC	1 cut(s)	236
MalI	GATC	2 cut(s)	119, 132
MboI	GATC	2 cut(s)	117, 130
MhlI	GDGCHC	1 cut(s)	156
MluCI	AATT	1 cut(s)	359
MmeI	TCCRAC	1 cut(s)	374
MspI	CCGG	1 cut(s)	50
Mva1269I	GAATGC	1 cut(s)	421
MvnI	CGCG	1 cut(s)	20
MwoI	GCNNNNNNNGC	2 cut(s)	11, 435
NdeII	GATC	2 cut(s)	117, 130
NlaIII	CATG	4 cut(s)	124, 283, 409, 495
NlaIV	GGNNCC	1 cut(s)	36
NmuCI	GTSAC	1 cut(s)	236
PagI	TCATGA	2 cut(s)	120, 491
PctI	GAATGC	1 cut(s)	421
PinAI	ACCGGT	1 cut(s)	49
PkrI	GCNGC	2 cut(s)	62, 65
Psp124BI	GAGCTC	1 cut(s)	156
PspN4I	GGNNCC	1 cut(s)	36
PspPI	GGNCC	1 cut(s)	210
SacI	GAGCTC	1 cut(s)	156
SalI	GTCGAC	1 cut(s)	308
SatI	GCNGC	2 cut(s)	61, 64
Sau3AI	GATC	2 cut(s)	117, 130
Sau96I	GGNCC	1 cut(s)	210
SduI	GDGCHC	1 cut(s)	156
SfaNI	GCATC	1 cut(s)	174
SmlI	CTYRAG	1 cut(s)	143
SmoI	CTYRAG	1 cut(s)	143
Sse9I	AATT	1 cut(s)	359
SsiI	CCGC	4 cut(s)	18, 60, 63, 195
SspMI	CTAG	3 cut(s)	261, 290, 467
SstI	GAGCTC	1 cut(s)	156
TaaI	ACNGT	1 cut(s)	307
TaiI	ACGT	1 cut(s)	243
TaqI	TCGA	4 cut(s)	129, 183, 228, 309
TasI	AATT	1 cut(s)	359
TauI	GCSGC	2 cut(s)	63, 66
TseFI	GTSAC	1 cut(s)	236
Tsp45I	GTSAC	1 cut(s)	236
TspDTI	ATGAA	1 cut(s)	152
XmiI	GTMKAC	1 cut(s)	309
XspI	CTAG	3 cut(s)	261, 290, 467
ZraI	GACGTC	1 cut(s)	241

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.