Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0017733

Physical Location & Seq

Genomic Coordinates Forward (+)

355768 .. 356721

Gene Structure 954 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g00570.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGAATATTCTCTTTATAAAACCCTCGACGCCTTTCGTCGCTTGCTCCTCTGACTCGCGTGAATCGTTATCCAGAGAAACAAGGGCAGCCAAACAAACCCTAAAGACAACTACGCACCTGCTCGATAGTCGTCGTCGTCGGAACGTCAGAGCCATGGAAGAGGCACCGGCGAGACGCGTCGGAGGAATGGGGGATGAGAAGCTGGAGTTCGTGACTTCCGATGGGATAGAGCCCATCATGACCTTCGATCAGATGGGTTTAAGGGACGATCTCCTCCGAGGCGTCTACAACTACGGCTTCGAGAAGCCCTCCGCCATCCAGCAACGGGCCGTCAGGCCCATCATAGAGGGTCGCGACGTCATTGCCCAGGCCCAGTCCGGTACCGGCAAGACCTCCATGATTGCGCTCACCGTCTGTCAGCTTGTCGACACCTCCTCCCGAGAGGTTCAGGCTTTGATATTGTCTCCGACGAGGGAATTGGCGGCGCAGACTGAGAAGGTGATATTAGCAATTGGGAATTTCATAAATATACAAGCGCATTCTTGCATTGGAGGCAAAAGCGTGGGTGAGGATATCCGAAAGCTCGAGTATGGCGTTCATGTGGTGTCTGGAACTCCTGGCAGAGTCTGTGATCGATCAAAAGAAGAACTCTCCGAACTCGAGCCATCAAATTATTATTTTATTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003729 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009628 GO:0009987 GO:0010467 GO:0010468 GO:0010501 GO:0016020 GO:0016070 GO:0016462 GO:0016604 GO:0016607 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0035145 GO:0036293 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0050789 GO:0050896 GO:0060255 GO:0065007 GO:0070013 GO:0070035 GO:0070482 GO:0071013 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03040 map03013 map03015 map03040

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

230

Amino Acids

25.28

Weight (kDa)

7.67

Isoelectric Point (pI)

56.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017733)

Species	Orthologous Gene IDs
malus_domestica	MD09G1268100.v1.1
prunus_persica	Prupe.5G019300_v2.0.a1
pyrus_communis	pycom13g00570
rosa_chinensis	RchiOBHm_Chr0c44g0503471 RchiOBHm_Chr0c44g0503481 RchiOBHm_Chr0c44g0503571 RchiOBHm_Chr0c44g0503761 RchiOBHm_Chr0c44g0503771 RchiOBHm_Chr4g0386201 RchiOBHm_Chr4g0386211 RchiOBHm_Chr4g0386351
rosa_samantha	Rh2DG639600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	17
AarI	CACCTGC	1 cut(s)	126
AatII	GACGTC	1 cut(s)	360
Acc36I	ACCTGC	1 cut(s)	126
Acc65I	GGTACC	1 cut(s)	380
AccB1I	GGYRCC	2 cut(s)	163, 380
AccI	GTMKAC	2 cut(s)	285, 426
AccII	CGCG	3 cut(s)	58, 177, 354
AciI	CCGC	2 cut(s)	312, 482
AcsI	RAATTY	1 cut(s)	517
AcyI	GRCGYC	3 cut(s)	29, 282, 357
AfaI	GTAC	1 cut(s)	382
AfiI	CCNNNNNNNGG	1 cut(s)	325
AflIII	ACRYGT	1 cut(s)	175
AjnI	CCWGG	2 cut(s)	366, 616
AluBI	AGCT	3 cut(s)	202, 421, 583
AluI	AGCT	3 cut(s)	202, 421, 583
Alw26I	GTCTC	2 cut(s)	166, 468
AlwNI	CAGNNNCTG	1 cut(s)	627
Ama87I	CYCGRG	3 cut(s)	438, 584, 659
AoxI	GGCC	3 cut(s)	327, 335, 369
ApeKI	GCWGC	1 cut(s)	86
ApoI	RAATTY	1 cut(s)	517
Asp718I	GGTACC	1 cut(s)	380
AspLEI	GCGC	3 cut(s)	406, 487, 538
AspS9I	GGNCC	3 cut(s)	327, 336, 370
AsuHPI	GGTGA	3 cut(s)	400, 511, 578
AvaI	CYCGRG	3 cut(s)	438, 584, 659
BanI	GGYRCC	2 cut(s)	163, 380
BanII	GRGCYC	1 cut(s)	234
BbvI	GCAGC	1 cut(s)	98
BccI	CCATC	6 cut(s)	215, 242, 247, 323, 347, 673
BceAI	ACGGC	2 cut(s)	310, 314
BcgI	CGANNNNNNTGC	2 cut(s)	344, 378
BciT130I	CCWGG	2 cut(s)	368, 618
BcoDI	GTCTC	2 cut(s)	166, 468
BfuAI	ACCTGC	1 cut(s)	126
BisI	GCNGC	2 cut(s)	87, 483
BlsI	GCNGC	2 cut(s)	88, 484
Bme1390I	CCNGG	2 cut(s)	368, 618
BmeT110I	CYCGRG	3 cut(s)	438, 584, 659
BmgT120I	GGNCC	3 cut(s)	327, 336, 370
BmiI	GGNNCC	2 cut(s)	165, 382
BmrFI	CCNGG	2 cut(s)	368, 618
BmrI	ACTGGG	1 cut(s)	367
BmuI	ACTGGG	1 cut(s)	367
BplI	GAGNNNNNCTC	2 cut(s)	293, 325
BpmI	CTGGAG	1 cut(s)	224
Bsa29I	ATCGAT	1 cut(s)	634
BsaHI	GRCGYC	3 cut(s)	29, 282, 357
BsaJI	CCNNGG	3 cut(s)	153, 277, 366
BsaWI	WCCGGW	1 cut(s)	377
BsaXI	ACNNNNNCTCC	2 cut(s)	419, 449
Bsc4I	CCNNNNNNNGG	1 cut(s)	325
Bse118I	RCCGGY	2 cut(s)	166, 383
Bse1I	ACTGG	1 cut(s)	373
Bse3DI	GCAATG	1 cut(s)	360
BseBI	CCWGG	2 cut(s)	368, 618
BseCI	ATCGAT	1 cut(s)	634
BseDI	CCNNGG	3 cut(s)	153, 277, 366
BseGI	GGATG	2 cut(s)	199, 315
BseLI	CCNNNNNNNGG	1 cut(s)	325
BseMI	GCAATG	1 cut(s)	360
BseMII	CTCAG	1 cut(s)	483
BseNI	ACTGG	1 cut(s)	373
BseRI	GAGGAG	3 cut(s)	37, 263, 424
BseXI	GCAGC	1 cut(s)	98
Bsh1236I	CGCG	3 cut(s)	58, 177, 354
BshFI	GGCC	3 cut(s)	329, 337, 371
BshNI	GGYRCC	2 cut(s)	163, 380
BshVI	ATCGAT	1 cut(s)	634
BsiHKCI	CYCGRG	3 cut(s)	438, 584, 659
BsiSI	CCGG	3 cut(s)	167, 378, 384
BslFI	GGGAC	1 cut(s)	278
BslI	CCNNNNNNNGG	1 cut(s)	325
BsmAI	GTCTC	2 cut(s)	166, 468
BsmBI	CGTCTC	1 cut(s)	166
BsmFI	GGGAC	1 cut(s)	278
BsmI	GAATGC	1 cut(s)	538
BsnI	GGCC	3 cut(s)	329, 337, 371
BsoBI	CYCGRG	3 cut(s)	438, 584, 659
Bsp1286I	GDGCHC	1 cut(s)	234
Bsp143I	GATC	4 cut(s)	247, 268, 631, 635
Bsp19I	CCATGG	1 cut(s)	153
Bsp68I	TCGCGA	1 cut(s)	354
BspACI	CCGC	2 cut(s)	312, 482
BspANI	GGCC	3 cut(s)	329, 337, 371
BspCNI	CTCAG	1 cut(s)	484
BspDI	ATCGAT	1 cut(s)	634
BspFNI	CGCG	3 cut(s)	58, 177, 354
BspHI	TCATGA	1 cut(s)	237
BspLI	GGNNCC	2 cut(s)	165, 382
BspMI	ACCTGC	1 cut(s)	126
BspT107I	GGYRCC	2 cut(s)	163, 380
BsrDI	GCAATG	1 cut(s)	360
BsrFI	RCCGGY	2 cut(s)	166, 383
BsrI	ACTGG	1 cut(s)	373
BssAI	RCCGGY	2 cut(s)	166, 383
BssECI	CCNNGG	3 cut(s)	153, 277, 366
BssMI	GATC	4 cut(s)	247, 268, 631, 635
BssNI	GRCGYC	3 cut(s)	29, 282, 357
BssT1I	CCWWGG	1 cut(s)	153
Bst2UI	CCWGG	2 cut(s)	368, 618
Bst4CI	ACNGT	1 cut(s)	412
Bst6I	CTCTTC	1 cut(s)	153
BstACI	GRCGYC	3 cut(s)	29, 282, 357
BstC8I	GCNNGC	1 cut(s)	43
BstDEI	CTNAG	1 cut(s)	492
BstDSI	CCRYGG	1 cut(s)	153
BstF5I	GGATG	2 cut(s)	199, 315
BstFNI	CGCG	3 cut(s)	58, 177, 354
BstHHI	GCGC	3 cut(s)	406, 487, 538
BstKTI	GATC	4 cut(s)	250, 271, 634, 638
BstMAI	GTCTC	2 cut(s)	166, 468
BstMBI	GATC	4 cut(s)	247, 268, 631, 635
BstMWI	GCNNNNNNNGC	1 cut(s)	552
BstNI	CCWGG	2 cut(s)	368, 618
BstSCI	CCNGG	2 cut(s)	366, 616
BstUI	CGCG	3 cut(s)	58, 177, 354
BstV1I	GCAGC	1 cut(s)	98
Bsu15I	ATCGAT	1 cut(s)	634
BsuRI	GGCC	3 cut(s)	329, 337, 371
BsuTUI	ATCGAT	1 cut(s)	634
BtgI	CCRYGG	1 cut(s)	153
BtsCI	GGATG	2 cut(s)	199, 315
BtuMI	TCGCGA	1 cut(s)	354
BveI	ACCTGC	1 cut(s)	126
Cac8I	GCNNGC	1 cut(s)	43
CaiI	CAGNNNCTG	1 cut(s)	627
CciI	TCATGA	1 cut(s)	237
CfoI	GCGC	3 cut(s)	406, 487, 538
Cfr10I	RCCGGY	2 cut(s)	166, 383
Cfr13I	GGNCC	3 cut(s)	327, 336, 370
ClaI	ATCGAT	1 cut(s)	634
CseI	GACGC	4 cut(s)	37, 166, 183, 271
Csp6I	GTAC	1 cut(s)	381
CviAII	CATG	4 cut(s)	154, 238, 397, 599
CviQI	GTAC	1 cut(s)	381
DdeI	CTNAG	1 cut(s)	492
DpnI	GATC	4 cut(s)	249, 270, 633, 637
DpnII	GATC	4 cut(s)	247, 268, 631, 635
Eam1104I	CTCTTC	1 cut(s)	153
EarI	CTCTTC	1 cut(s)	153
EciI	GGCGGA	1 cut(s)	301
Eco130I	CCWWGG	1 cut(s)	153
Eco24I	GRGCYC	1 cut(s)	234
Eco32I	GATATC	1 cut(s)	574
Eco88I	CYCGRG	3 cut(s)	438, 584, 659
EcoRII	CCWGG	2 cut(s)	366, 616
EcoRV	GATATC	1 cut(s)	574
EcoT14I	CCWWGG	1 cut(s)	153
EcoT38I	GRGCYC	1 cut(s)	234
ErhI	CCWWGG	1 cut(s)	153
Esp3I	CGTCTC	1 cut(s)	166
FaeI	CATG	4 cut(s)	157, 241, 400, 602
FaiI	YATR	9 cut(s)	17, 155, 239, 344, 398, 524, 530, 591, 600
FaqI	GGGAC	1 cut(s)	278
FatI	CATG	4 cut(s)	153, 237, 396, 598
FblI	GTMKAC	2 cut(s)	285, 426
Fnu4HI	GCNGC	2 cut(s)	87, 483
FokI	GGATG	2 cut(s)	206, 302
FriOI	GRGCYC	1 cut(s)	234
Fsp4HI	GCNGC	2 cut(s)	87, 483
GlaI	GCGC	3 cut(s)	405, 486, 537
GluI	GCNGC	2 cut(s)	87, 483
GsuI	CTGGAG	1 cut(s)	224
HaeIII	GGCC	3 cut(s)	329, 337, 371
HapII	CCGG	3 cut(s)	167, 378, 384
HgaI	GACGC	4 cut(s)	37, 166, 183, 271
HhaI	GCGC	3 cut(s)	406, 487, 538
Hin1I	GRCGYC	3 cut(s)	29, 282, 357
Hin1II	CATG	4 cut(s)	157, 241, 400, 602
Hin6I	GCGC	3 cut(s)	404, 485, 536
HinP1I	GCGC	3 cut(s)	404, 485, 536
HincII	GTYRAC	1 cut(s)	427
HindII	GTYRAC	1 cut(s)	427
HinfI	GANTC	3 cut(s)	53, 62, 624
HpaII	CCGG	3 cut(s)	167, 378, 384
HphI	GGTGA	3 cut(s)	400, 511, 578
Hpy166II	GTNNAC	2 cut(s)	286, 427
Hpy188III	TCNNGA	7 cut(s)	72, 211, 238, 301, 353, 438, 609
Hpy8I	GTNNAC	2 cut(s)	286, 427
Hpy99I	CGWCG	8 cut(s)	31, 41, 135, 138, 141, 182, 359, 472
HpyAV	CCTTC	2 cut(s)	253, 490
HpyCH4III	ACNGT	1 cut(s)	412
HpyCH4IV	ACGT	2 cut(s)	144, 357
HpyCH4V	TGCA	1 cut(s)	546
HpyF10VI	GCNNNNNNNGC	1 cut(s)	552
HpyF3I	CTNAG	1 cut(s)	492
HpySE526I	ACGT	2 cut(s)	144, 357
Hsp92I	GRCGYC	3 cut(s)	29, 282, 357
Hsp92II	CATG	4 cut(s)	157, 241, 400, 602
HspAI	GCGC	3 cut(s)	404, 485, 536
KpnI	GGTACC	1 cut(s)	384
Kzo9I	GATC	4 cut(s)	247, 268, 631, 635
LmnI	GCTCC	1 cut(s)	50
Lsp1109I	GCAGC	1 cut(s)	98
MaeII	ACGT	2 cut(s)	144, 357
MaeIII	GTNAC	1 cut(s)	211
MalI	GATC	4 cut(s)	249, 270, 633, 637
MboI	GATC	4 cut(s)	247, 268, 631, 635
MboII	GAAGA	2 cut(s)	170, 656
MfeI	CAATTG	1 cut(s)	510
MhlI	GDGCHC	1 cut(s)	234
MluCI	AATT	4 cut(s)	476, 510, 517, 670
MluI	ACGCGT	1 cut(s)	175
MlyI	GAGTC	2 cut(s)	47, 633
MmeI	TCCRAC	3 cut(s)	119, 160, 491
MseI	TTAA	1 cut(s)	260
MspI	CCGG	3 cut(s)	167, 378, 384
MspR9I	CCNGG	2 cut(s)	368, 618
MunI	CAATTG	1 cut(s)	510
Mva1269I	GAATGC	1 cut(s)	538
MvaI	CCWGG	2 cut(s)	368, 618
MvnI	CGCG	3 cut(s)	58, 177, 354
MwoI	GCNNNNNNNGC	1 cut(s)	552
NcoI	CCATGG	1 cut(s)	153
NdeII	GATC	4 cut(s)	247, 268, 631, 635
NlaIII	CATG	4 cut(s)	157, 241, 400, 602
NlaIV	GGNNCC	2 cut(s)	165, 382
NmuCI	GTSAC	1 cut(s)	211
NruI	TCGCGA	1 cut(s)	354
PaeR7I	CTCGAG	2 cut(s)	584, 659
PagI	TCATGA	1 cut(s)	237
PaqCI	CACCTGC	1 cut(s)	126
PcsI	WCGNNNNNNNCGW	3 cut(s)	62, 216, 591
PctI	GAATGC	1 cut(s)	538
PfeI	GAWTC	1 cut(s)	62
PkrI	GCNGC	2 cut(s)	88, 484
PleI	GAGTC	2 cut(s)	47, 632
PpsI	GAGTC	2 cut(s)	47, 632
PsiI	TTATAA	1 cut(s)	17
Psp6I	CCWGG	2 cut(s)	366, 616
PspGI	CCWGG	2 cut(s)	366, 616
PspN4I	GGNNCC	2 cut(s)	165, 382
PspPI	GGNCC	3 cut(s)	327, 336, 370
PspXI	VCTCGAGB	2 cut(s)	584, 659
PstNI	CAGNNNCTG	1 cut(s)	627
RruI	TCGCGA	1 cut(s)	354
RsaI	GTAC	1 cut(s)	382
RsaNI	GTAC	1 cut(s)	381
SalI	GTCGAC	1 cut(s)	425
SaqAI	TTAA	1 cut(s)	260
SatI	GCNGC	2 cut(s)	87, 483
Sau3AI	GATC	4 cut(s)	247, 268, 631, 635
Sau96I	GGNCC	3 cut(s)	327, 336, 370
SchI	GAGTC	2 cut(s)	47, 633
ScrFI	CCNGG	2 cut(s)	368, 618
SduI	GDGCHC	1 cut(s)	234
Sfr274I	CTCGAG	2 cut(s)	584, 659
SgrAI	CRCCGGYG	1 cut(s)	166
SlaI	CTCGAG	2 cut(s)	584, 659
SmlI	CTYRAG	2 cut(s)	584, 659
SmoI	CTYRAG	2 cut(s)	584, 659
Sse9I	AATT	4 cut(s)	476, 510, 517, 670
SsiI	CCGC	2 cut(s)	312, 482
SspI	AATATT	1 cut(s)	7
StyD4I	CCNGG	2 cut(s)	366, 616
StyI	CCWWGG	1 cut(s)	153
TaaI	ACNGT	1 cut(s)	412
TaiI	ACGT	2 cut(s)	147, 360
TaqI	TCGA	8 cut(s)	26, 123, 246, 300, 426, 585, 634, 660
TasI	AATT	4 cut(s)	476, 510, 517, 670
TauI	GCSGC	1 cut(s)	485
TfiI	GAWTC	1 cut(s)	62
Tru1I	TTAA	1 cut(s)	260
Tru9I	TTAA	1 cut(s)	260
TseFI	GTSAC	1 cut(s)	211
TseI	GCWGC	1 cut(s)	86
Tsp45I	GTSAC	1 cut(s)	211
TspDTI	ATGAA	3 cut(s)	17, 511, 587
XapI	RAATTY	1 cut(s)	517
XhoI	CTCGAG	2 cut(s)	584, 659
XmiI	GTMKAC	2 cut(s)	285, 426
ZraI	GACGTC	1 cut(s)	358

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.