Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0017733

Physical Location & Seq

Genomic Coordinates Forward (+)

86792633 .. 86793701

Gene Structure 1069 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG639600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGAACCGACCGGTTCAGGGCGGCGGCAAGGTGCTGAAGGAGAAGCTGGAGTTTGTGCCGTCAGATGATATAGAGCCGATCATGAGCTTCGATCAGATGAACCTCAAGGACGAGCTCCTCCGAGGCATCTACAACTACGGCTTCGAGAAGCCCTCCGCCATCCAGCAAAGGGCCATCAGACCTATAATCGAGGGCCGCGACGTCATATCTCAGGCTCAATCTGGCACTGGAAAGACCTCCATGATTGCCCTAGCTTCTTGCCAAACCGTCGACACCTCCTCCAGAGAGGTTCAGGTGTTGATATTGTCTCAAACGAGGGAATTGGCTGCACAGACAGAGAAAGTGATACTGGCAATGGGAAACTACATGAGTATTCAAGCGCATTCCTGCATTGGAGGCAAAAGCGTGGGTGAGGATATCAGAAAGCTAGAGAACGGAGTTCAGGTGGTGTCTGGAACTCCCGGTAGAGTCCATGACATGATTCAGAGGGGAAGTCTACGCACTCGACACATCAAACTACTAATTCTTGATGAATCTGATGAGATGTTGAGCAGAGGCTTCAAGAAGAAAATTTACGAAGTCTACAGACATCTACAAGATACCCTACAAGTTTGCTTGATCTCCGCGACGCTCCCTAATGAAATTTTGGAGATGACCAACAAATTCATGACTGATCCTATAAGGATCCTGGTTAAACGTGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003729 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009628 GO:0009987 GO:0010467 GO:0010468 GO:0010501 GO:0016020 GO:0016070 GO:0016462 GO:0016604 GO:0016607 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0035145 GO:0036293 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0050789 GO:0050896 GO:0060255 GO:0065007 GO:0070013 GO:0070035 GO:0070482 GO:0071013 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03040 map03013 map03015 map03040

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

234

Amino Acids

26.19

Weight (kDa)

8.72

Isoelectric Point (pI)

40.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ResIII	PF04851	52 - 202	1.5e-06	Type III restriction enzyme, res subunit
DEAD	PF00270	53 - 215	1.4e-41	DEAD/DEAH box helicase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017733)

Species	Orthologous Gene IDs
malus_domestica	MD09G1268100.v1.1
prunus_persica	Prupe.5G019300_v2.0.a1
pyrus_communis	pycom13g00570
rosa_chinensis	RchiOBHm_Chr0c44g0503471 RchiOBHm_Chr0c44g0503481 RchiOBHm_Chr0c44g0503571 RchiOBHm_Chr0c44g0503761 RchiOBHm_Chr0c44g0503771 RchiOBHm_Chr4g0386201 RchiOBHm_Chr4g0386211 RchiOBHm_Chr4g0386351
rosa_samantha	Rh2DG639600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	204
AccI	GTMKAC	3 cut(s)	270, 496, 582
AccII	CGCG	2 cut(s)	198, 626
AciI	CCGC	5 cut(s)	21, 24, 156, 196, 624
AclWI	GGATC	3 cut(s)	668, 679, 692
AcsI	RAATTY	3 cut(s)	570, 642, 662
AcuI	CTGAAG	1 cut(s)	56
AcyI	GRCGYC	1 cut(s)	201
AfiI	CCNNNNNNNGG	2 cut(s)	17, 169
AgeI	ACCGGT	1 cut(s)	10
AgsI	TTSAA	2 cut(s)	377, 562
AjnI	CCWGG	1 cut(s)	687
AluBI	AGCT	5 cut(s)	46, 87, 115, 254, 427
AluI	AGCT	5 cut(s)	46, 87, 115, 254, 427
Alw21I	GWGCWC	1 cut(s)	117
Alw26I	GTCTC	1 cut(s)	312
AlwI	GGATC	3 cut(s)	668, 679, 692
AoxI	GGCC	2 cut(s)	171, 193
ApeKI	GCWGC	1 cut(s)	326
ApoI	RAATTY	3 cut(s)	570, 642, 662
AsiGI	ACCGGT	1 cut(s)	10
AspLEI	GCGC	1 cut(s)	382
AspS9I	GGNCC	2 cut(s)	171, 193
AsuC2I	CCSGG	1 cut(s)	462
AsuHPI	GGTGA	1 cut(s)	422
BamHI	GGATCC	1 cut(s)	684
BanII	GRGCYC	1 cut(s)	117
BarI	GAAGNNNNNNTAC	2 cut(s)	557, 589
Bbv12I	GWGCWC	1 cut(s)	117
BbvI	GCAGC	1 cut(s)	313
BccI	CCATC	2 cut(s)	167, 182
BceAI	ACGGC	2 cut(s)	43, 154
BciT130I	CCWGG	1 cut(s)	689
BcnI	CCSGG	1 cut(s)	462
BcoDI	GTCTC	1 cut(s)	312
BfaI	CTAG	2 cut(s)	251, 428
BfmI	CTRYAG	1 cut(s)	583
BisI	GCNGC	4 cut(s)	22, 25, 196, 327
BlsI	GCNGC	4 cut(s)	23, 26, 197, 328
Bme1390I	CCNGG	2 cut(s)	462, 689
BmgT120I	GGNCC	2 cut(s)	171, 193
BmiI	GGNNCC	1 cut(s)	686
BmrFI	CCNGG	2 cut(s)	462, 689
BmsI	GCATC	1 cut(s)	135
BplI	GAGNNNNNCTC	2 cut(s)	137, 169
BpmI	CTGGAG	2 cut(s)	68, 265
BpuEI	CTTGAG	1 cut(s)	89
BpuMI	CCSGG	1 cut(s)	462
BsaHI	GRCGYC	1 cut(s)	201
BsaJI	CCNNGG	1 cut(s)	121
BsaWI	WCCGGW	1 cut(s)	10
BsaXI	ACNNNNNCTCC	4 cut(s)	263, 293, 429, 459
Bsc4I	CCNNNNNNNGG	2 cut(s)	17, 169
Bse118I	RCCGGY	1 cut(s)	10
Bse1I	ACTGG	2 cut(s)	232, 354
Bse3DI	GCAATG	1 cut(s)	360
BseBI	CCWGG	1 cut(s)	689
BseDI	CCNNGG	1 cut(s)	121
BseGI	GGATG	1 cut(s)	159
BseLI	CCNNNNNNNGG	2 cut(s)	17, 169
BseMI	GCAATG	1 cut(s)	360
BseMII	CTCAG	1 cut(s)	224
BseNI	ACTGG	2 cut(s)	232, 354
BseRI	GAGGAG	2 cut(s)	107, 268
BseXI	GCAGC	1 cut(s)	313
BsgI	GTGCAG	1 cut(s)	312
Bsh1236I	CGCG	2 cut(s)	198, 626
Bsh1285I	CGRYCG	1 cut(s)	11
BshFI	GGCC	2 cut(s)	173, 195
BshTI	ACCGGT	1 cut(s)	10
BsiEI	CGRYCG	1 cut(s)	11
BsiHKAI	GWGCWC	1 cut(s)	117
BsiSI	CCGG	2 cut(s)	11, 462
BslI	CCNNNNNNNGG	2 cut(s)	17, 169
BsmAI	GTCTC	1 cut(s)	312
BsmI	GAATGC	1 cut(s)	382
BsnI	GGCC	2 cut(s)	173, 195
Bsp1286I	GDGCHC	1 cut(s)	117
Bsp143I	GATC	5 cut(s)	78, 91, 618, 673, 684
BspACI	CCGC	5 cut(s)	21, 24, 156, 196, 624
BspANI	GGCC	2 cut(s)	173, 195
BspCNI	CTCAG	1 cut(s)	223
BspFNI	CGCG	2 cut(s)	198, 626
BspHI	TCATGA	2 cut(s)	81, 666
BspLI	GGNNCC	1 cut(s)	686
BspPI	GGATC	3 cut(s)	668, 679, 692
BsrDI	GCAATG	1 cut(s)	360
BsrFI	RCCGGY	1 cut(s)	10
BsrI	ACTGG	2 cut(s)	232, 354
BssAI	RCCGGY	1 cut(s)	10
BssECI	CCNNGG	1 cut(s)	121
BssMI	GATC	5 cut(s)	78, 91, 618, 673, 684
BssNI	GRCGYC	1 cut(s)	201
Bst2UI	CCWGG	1 cut(s)	689
Bst4CI	ACNGT	1 cut(s)	268
BstACI	GRCGYC	1 cut(s)	201
BstDEI	CTNAG	1 cut(s)	210
BstF5I	GGATG	1 cut(s)	159
BstFNI	CGCG	2 cut(s)	198, 626
BstHHI	GCGC	1 cut(s)	382
BstKTI	GATC	5 cut(s)	81, 94, 621, 676, 687
BstMAI	GTCTC	1 cut(s)	312
BstMBI	GATC	5 cut(s)	78, 91, 618, 673, 684
BstMCI	CGRYCG	1 cut(s)	11
BstMWI	GCNNNNNNNGC	1 cut(s)	396
BstNI	CCWGG	1 cut(s)	689
BstSCI	CCNGG	2 cut(s)	460, 687
BstSFI	CTRYAG	1 cut(s)	583
BstUI	CGCG	2 cut(s)	198, 626
BstV1I	GCAGC	1 cut(s)	313
BstX2I	RGATCY	1 cut(s)	684
BstYI	RGATCY	1 cut(s)	684
BsuRI	GGCC	2 cut(s)	173, 195
BtsCI	GGATG	1 cut(s)	159
BtsIMutI	CAGTG	1 cut(s)	225
CciI	TCATGA	2 cut(s)	81, 666
CfoI	GCGC	1 cut(s)	382
Cfr10I	RCCGGY	1 cut(s)	10
Cfr13I	GGNCC	2 cut(s)	171, 193
CseI	GACGC	1 cut(s)	637
CspAI	ACCGGT	1 cut(s)	10
CviAII	CATG	6 cut(s)	82, 241, 367, 473, 478, 667
DdeI	CTNAG	1 cut(s)	210
DpnI	GATC	5 cut(s)	80, 93, 620, 675, 686
DpnII	GATC	5 cut(s)	78, 91, 618, 673, 684
EciI	GGCGGA	1 cut(s)	145
Ecl136II	GAGCTC	1 cut(s)	115
Eco24I	GRGCYC	1 cut(s)	117
Eco32I	GATATC	1 cut(s)	418
Eco53kI	GAGCTC	1 cut(s)	115
Eco57I	CTGAAG	1 cut(s)	56
EcoICRI	GAGCTC	1 cut(s)	115
EcoRII	CCWGG	1 cut(s)	687
EcoRV	GATATC	1 cut(s)	418
EcoT38I	GRGCYC	1 cut(s)	117
FaeI	CATG	6 cut(s)	85, 244, 370, 476, 481, 670
FatI	CATG	6 cut(s)	81, 240, 366, 472, 477, 666
FblI	GTMKAC	3 cut(s)	270, 496, 582
Fnu4HI	GCNGC	4 cut(s)	22, 25, 196, 327
FokI	GGATG	1 cut(s)	146
FriOI	GRGCYC	1 cut(s)	117
Fsp4HI	GCNGC	4 cut(s)	22, 25, 196, 327
FspBI	CTAG	2 cut(s)	251, 428
GlaI	GCGC	1 cut(s)	381
GluI	GCNGC	4 cut(s)	22, 25, 196, 327
GsuI	CTGGAG	2 cut(s)	68, 265
HaeIII	GGCC	2 cut(s)	173, 195
HapII	CCGG	2 cut(s)	11, 462
HgaI	GACGC	1 cut(s)	637
HhaI	GCGC	1 cut(s)	382
Hin1I	GRCGYC	1 cut(s)	201
Hin1II	CATG	6 cut(s)	85, 244, 370, 476, 481, 670
Hin6I	GCGC	1 cut(s)	380
HinP1I	GCGC	1 cut(s)	380
HincII	GTYRAC	1 cut(s)	271
HindII	GTYRAC	1 cut(s)	271
HinfI	GANTC	3 cut(s)	468, 481, 533
HpaII	CCGG	2 cut(s)	11, 462
HphI	GGTGA	1 cut(s)	422
Hpy166II	GTNNAC	3 cut(s)	271, 497, 583
Hpy188I	TCNGA	7 cut(s)	64, 96, 122, 179, 422, 486, 538
Hpy188III	TCNNGA	7 cut(s)	82, 145, 282, 453, 527, 562, 667
Hpy8I	GTNNAC	3 cut(s)	271, 497, 583
Hpy99I	CGWCG	3 cut(s)	203, 272, 631
HpyAV	CCTTC	1 cut(s)	31
HpyCH4III	ACNGT	1 cut(s)	268
HpyCH4IV	ACGT	2 cut(s)	201, 697
HpyCH4V	TGCA	2 cut(s)	329, 390
HpyF10VI	GCNNNNNNNGC	1 cut(s)	396
HpyF3I	CTNAG	1 cut(s)	210
HpySE526I	ACGT	2 cut(s)	201, 697
Hsp92I	GRCGYC	1 cut(s)	201
Hsp92II	CATG	6 cut(s)	85, 244, 370, 476, 481, 670
HspAI	GCGC	1 cut(s)	380
Kzo9I	GATC	5 cut(s)	78, 91, 618, 673, 684
LmnI	GCTCC	2 cut(s)	120, 636
Lsp1109I	GCAGC	1 cut(s)	313
LweI	GCATC	1 cut(s)	135
MaeI	CTAG	2 cut(s)	251, 428
MaeII	ACGT	2 cut(s)	201, 697
MalI	GATC	5 cut(s)	80, 93, 620, 675, 686
MboI	GATC	5 cut(s)	78, 91, 618, 673, 684
MboII	GAAGA	1 cut(s)	577
MflI	RGATCY	1 cut(s)	684
MhlI	GDGCHC	1 cut(s)	117
MluCI	AATT	5 cut(s)	320, 522, 570, 642, 662
MlyI	GAGTC	1 cut(s)	477
MseI	TTAA	2 cut(s)	693, 703
MspI	CCGG	2 cut(s)	11, 462
MspR9I	CCNGG	2 cut(s)	462, 689
Mva1269I	GAATGC	1 cut(s)	382
MvaI	CCWGG	1 cut(s)	689
MvnI	CGCG	2 cut(s)	198, 626
MwoI	GCNNNNNNNGC	1 cut(s)	396
NciI	CCSGG	1 cut(s)	462
NdeII	GATC	5 cut(s)	78, 91, 618, 673, 684
NlaIII	CATG	6 cut(s)	85, 244, 370, 476, 481, 670
NlaIV	GGNNCC	1 cut(s)	686
PagI	TCATGA	2 cut(s)	81, 666
PcsI	WCGNNNNNNNCGW	1 cut(s)	195
PctI	GAATGC	1 cut(s)	382
PfeI	GAWTC	2 cut(s)	481, 533
PinAI	ACCGGT	1 cut(s)	10
PkrI	GCNGC	4 cut(s)	23, 26, 197, 328
PleI	GAGTC	1 cut(s)	476
PpsI	GAGTC	1 cut(s)	476
Psp124BI	GAGCTC	1 cut(s)	117
Psp6I	CCWGG	1 cut(s)	687
PspGI	CCWGG	1 cut(s)	687
PspN4I	GGNNCC	1 cut(s)	686
PspPI	GGNCC	2 cut(s)	171, 193
PsuI	RGATCY	1 cut(s)	684
SacI	GAGCTC	1 cut(s)	117
SalI	GTCGAC	1 cut(s)	269
SaqAI	TTAA	2 cut(s)	693, 703
SatI	GCNGC	4 cut(s)	22, 25, 196, 327
Sau3AI	GATC	5 cut(s)	78, 91, 618, 673, 684
Sau96I	GGNCC	2 cut(s)	171, 193
SchI	GAGTC	1 cut(s)	477
ScrFI	CCNGG	2 cut(s)	462, 689
SduI	GDGCHC	1 cut(s)	117
SfaNI	GCATC	1 cut(s)	135
SfcI	CTRYAG	1 cut(s)	583
SmlI	CTYRAG	1 cut(s)	104
SmoI	CTYRAG	1 cut(s)	104
Sse9I	AATT	5 cut(s)	320, 522, 570, 642, 662
SsiI	CCGC	5 cut(s)	21, 24, 156, 196, 624
SspMI	CTAG	2 cut(s)	251, 428
SstI	GAGCTC	1 cut(s)	117
StyD4I	CCNGG	2 cut(s)	460, 687
TaaI	ACNGT	1 cut(s)	268
TaiI	ACGT	2 cut(s)	204, 700
TaqI	TCGA	5 cut(s)	90, 144, 189, 270, 505
TasI	AATT	5 cut(s)	320, 522, 570, 642, 662
TauI	GCSGC	3 cut(s)	24, 27, 198
TfiI	GAWTC	2 cut(s)	481, 533
Tru1I	TTAA	2 cut(s)	693, 703
Tru9I	TTAA	2 cut(s)	693, 703
TscAI	CASTG	1 cut(s)	232
TseI	GCWGC	1 cut(s)	326
TspDTI	ATGAA	5 cut(s)	17, 113, 546, 654, 655
TspGWI	ACGGA	1 cut(s)	450
TspRI	CASTG	1 cut(s)	232
XapI	RAATTY	3 cut(s)	570, 642, 662
XmiI	GTMKAC	3 cut(s)	270, 496, 582
XspI	CTAG	2 cut(s)	251, 428
ZraI	GACGTC	1 cut(s)	202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.