MD10G1015900.v1.1

Belongs to the glycosyltransferase 8 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0008607
Physical Location & Seq
Reverse (-)
2086537 .. 2090709
4173 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1015900.v1.1.491

Sequence Viewer

Length: 1935 bp
ATGAGAGGTTCCTCCCCAACTCCCATTGAGCCCCGACACCGCCTTTCTACTTCTGCCAGTGACGACTCTAACAAAAGAAGGCCCCAGAGGAACAAAGATTTTAAAGATATTGAGAAGTTCCTCCACGTTCCCGTGCAAGATAGAACTTTGAACTGCAAGCCCACCTTGAAGCTTGTGTTGGCTGTTATTTTATTGGGGACTTTTCTCACGCTTATCTTCTCTCCTGGTGTTTATCATTCAGATGATAAATCCCGTTCCATATCTCACCCAACTTCTGAAGACAGGTCGACAAGAAAGAGTGTTGCTCAAGATTTACATTACATATCATCTGTAGAAATTAACTGGGATGAAATTTCTGATGCTATTGAAAATCTGGCAGACAGAAAGGATTATCAGGGAATTGGCTTGTTAAACTTTAATGATGCTGAGATTGACCATTGGAAGGAGCTGTTGCCAGATTGTGAGCATGTTGTTCTACGCCTCAATCATGCGTCGAACAACATAACATGGGAAACCCTATTCCCTGAATGGATAGATGAAGAGGAAGACTTTGAAGTTCCTACTTGTCCCTCCCTACCAAAGCTTCAGATTCCTGGAAAACCAAGGCTTGATCTGATTGCTGTGAAGCTTCCCTGCAACAAGTCAGGCAGCTGGTCAAGAGATGTGGCTCGGTTGCACTTGCAGCTTGAAGCAGCAAGGCTGGCTGCAGCTTCCAAAGCGTATCACCCAGTGCATGTGCTTTTGGTGACAGACTGTTTCCCAATCCCAAATTTGTTCACTTGCAAAGAGCTTGTCAGACGGGAAGGGAATGTATGGCTTTATGAACCAAAACTGAATACGTTGAGAGATAAGCTACAGCTCCCTGTAGGTTCATGTGAACTTTCAGTTCCTCTCACGGCTAAAGAAAGCTTTTACTCGGAAAGAGCCCACAGAGAAGCATATGCAACAATCCTACATTCTGCCCATGTGTATGTTTGTGGAGCCATTGCTGCAGCTCAGAGCATCCGTATGTCTGGTTCAACACGAGATCTTGTAATACTTGTTGATGAAACAATCAGTGAGTATCATCGTGGAGGGTTGGCAGCTGCTGGGTGGAAGATCCACACAATCCAAAGAATCAGGAACCCTAAAGCTGAACCAGAAGCATACAATGAATGGAACTACAGCAAATTCCGTCTTTGGCAGTTAACTGATTATGACAAGATCATTTTCATTGATGCTGACATGCTTATACTTAGGAACATTGACTTCCTGTTTGAGATGCCAGAAATATCAGCGACAGGAAATAATGCTACTCTGTTCAACTCAGGTGTCATGGTTATCGAACCATCAAATTGTACATTCCAGCTGCTCATGGATCATGTTGATGAAATTGTGTCCTACAATGGTGGGGACCAGGGTTATCTGAATGAGGTATTTACATGGTGGCACAGGATACCAAAACATATGAACTTCTTGAAACACTTCTGGGAAGGTGATGAGCCGGAGAAAAAGGAGAGGAAAACACATCTCTTTGCATCTGAACCCCCAATCCTCTACGTCCTCCATTACCTGGGAAATAAACCATGGCTTTGCTTCCGTGACTATGACTGCAACTGGAATGTGGACTTTCTGCAGGAGTTTGCCAGTAATGTTGCACATAGAAGGTGGTGGAAAGTGCATGATGCTATGCCGGAAAACTTACAAAATTTCTGTTTGCTTCGGTCCAAGCAGAAGGCAGCACTAGAGTGGGATCGGAGACAAGCTGAGAAAGCAAATTACACTGATGGTCACTGGAAAATTAAGATAAAAGACAAGCGTTTGAAGACATGCTTTGAGGATTTTTGCTTCTGGGAGAGCATGTTATGGCATTGGGGTGAAAAGAATTGGACCGATAATGCTACTGCTTCTCTATCACCACCTGCACTTACCACTGCATCCGTCGCTTCTTCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_transf_8

Protein Analysis

645

Amino Acids

74.45

Weight (kDa)

6.18

Isoelectric Point (pI)

47.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_8 PF01501 318 - 524 3.2e-13 Glycosyl transferase family 8
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1909
Acc36I ACCTGC 1 cut(s) 1909
AccB7I CCANNNNNTGG 1 cut(s) 1552
AccI GTMKAC 1 cut(s) 287
AciI CCGC 1 cut(s) 40
AclWI GGATC 3 cut(s) 1093, 1365, 1740
AcsI RAATTY 4 cut(s) 351, 769, 1169, 1687
AcuI CTGAAG 2 cut(s) 297, 569
AdeI CACNNNGTG 1 cut(s) 730
AfaI GTAC 1 cut(s) 1339
AfiI CCNNNNNNNGG 2 cut(s) 442, 1552
AgsI TTSAA 9 cut(s) 151, 169, 368, 554, 689, 1020, 1303, 1459, 1804
AjnI CCWGG 4 cut(s) 223, 592, 1395, 1551
AjuI GAANNNNNNNTTGG 2 cut(s) 161, 193
AleI CACNNNNGTG 1 cut(s) 1726
AloI GAACNNNNNNTCC 2 cut(s) 1515, 1547
Alw26I GTCTC 1 cut(s) 1732
AlwI GGATC 3 cut(s) 1093, 1365, 1740
AlwNI CAGNNNCTG 1 cut(s) 1088
AoxI GGCC 1 cut(s) 80
ApoI RAATTY 4 cut(s) 351, 769, 1169, 1687
ArsI GACNNNNNNTTYG 4 cut(s) 777, 809, 1238, 1270
Asp700I GAANNNNTTC 1 cut(s) 1463
AspS9I GGNCC 4 cut(s) 81, 1393, 1704, 1869
AsuHPI GGTGA 6 cut(s) 257, 716, 757, 1487, 1868, 1887
AvaII GGWCC 3 cut(s) 1393, 1704, 1869
BanII GRGCYC 2 cut(s) 33, 928
BauI CACGAG 1 cut(s) 1023
BbsI GAAGAC 3 cut(s) 285, 552, 1811
BccI CCATC 2 cut(s) 1336, 1760
BceAI ACGGC 1 cut(s) 912
BciT130I CCWGG 4 cut(s) 225, 594, 1397, 1553
BciVI GTATCC 1 cut(s) 1428
BcoDI GTCTC 1 cut(s) 1732
BfaI CTAG 1 cut(s) 1724
BfmI CTRYAG 7 cut(s) 330, 705, 854, 864, 990, 1162, 1613
BfuAI ACCTGC 1 cut(s) 1909
BfuI GTATCC 1 cut(s) 1428
BglII AGATCT 1 cut(s) 1027
Bme1390I CCNGG 4 cut(s) 225, 594, 1397, 1553
Bme18I GGWCC 3 cut(s) 1393, 1704, 1869
BmgT120I GGNCC 4 cut(s) 81, 1393, 1704, 1869
BmiI GGNNCC 5 cut(s) 10, 83, 982, 1124, 1394
BmrFI CCNGG 4 cut(s) 225, 594, 1397, 1553
BmrI ACTGGG 2 cut(s) 352, 722
BmsI GCATC 8 cut(s) 349, 412, 1011, 1207, 1251, 1526, 1654, 1925
BmuI ACTGGG 2 cut(s) 352, 722
BpiI GAAGAC 3 cut(s) 285, 552, 1811
BplI GAGNNNNNCTC 2 cut(s) 289, 321
BpuEI CTTGAG 1 cut(s) 291
BsaJI CCNNGG 4 cut(s) 602, 1396, 1552, 1565
BsaXI ACNNNNNCTCC 2 cut(s) 1826, 1856
Bsc4I CCNNNNNNNGG 2 cut(s) 442, 1552
Bse1I ACTGG 6 cut(s) 57, 347, 728, 1601, 1626, 1778
Bse3DI GCAATG 1 cut(s) 984
BseBI CCWGG 4 cut(s) 225, 594, 1397, 1553
BseDI CCNNGG 4 cut(s) 602, 1396, 1552, 1565
BseGI GGATG 3 cut(s) 352, 1002, 1916
BseLI CCNNNNNNNGG 2 cut(s) 442, 1552
BseMI GCAATG 1 cut(s) 984
BseMII CTCAG 4 cut(s) 417, 1010, 1320, 1737
BseNI ACTGG 6 cut(s) 57, 347, 728, 1601, 1626, 1778
BseYI CCCAGC 1 cut(s) 1088
BsgI GTGCAG 1 cut(s) 1887
BshFI GGCC 1 cut(s) 82
BsiSI CCGG 2 cut(s) 1484, 1673
BslFI GGGAC 3 cut(s) 211, 552, 1406
BslI CCNNNNNNNGG 2 cut(s) 442, 1552
BsmAI GTCTC 1 cut(s) 1732
BsmFI GGGAC 3 cut(s) 211, 552, 1406
BsnI GGCC 1 cut(s) 82
Bsp1286I GDGCHC 2 cut(s) 33, 928
Bsp1407I TGTACA 1 cut(s) 1337
Bsp143I GATC 6 cut(s) 610, 1027, 1098, 1203, 1357, 1732
Bsp19I CCATGG 1 cut(s) 1565
BspACI CCGC 1 cut(s) 40
BspANI GGCC 1 cut(s) 82
BspCNI CTCAG 4 cut(s) 418, 1009, 1319, 1738
BspLI GGNNCC 5 cut(s) 10, 83, 982, 1124, 1394
BspMAI CTGCAG 3 cut(s) 709, 994, 1617
BspMI ACCTGC 1 cut(s) 1909
BspPI GGATC 3 cut(s) 1093, 1365, 1740
BsrDI GCAATG 1 cut(s) 984
BsrGI TGTACA 1 cut(s) 1337
BsrI ACTGG 6 cut(s) 57, 347, 728, 1601, 1626, 1778
BssECI CCNNGG 4 cut(s) 602, 1396, 1552, 1565
BssMI GATC 6 cut(s) 610, 1027, 1098, 1203, 1357, 1732
BssSI CACGAG 1 cut(s) 1023
BssT1I CCWWGG 2 cut(s) 602, 1565
Bst2BI CACGAG 1 cut(s) 1023
Bst2UI CCWGG 4 cut(s) 225, 594, 1397, 1553
Bst4CI ACNGT 1 cut(s) 755
Bst6I CTCTTC 1 cut(s) 534
BstAUI TGTACA 1 cut(s) 1337
BstC8I GCNNGC 2 cut(s) 158, 702
BstDEI CTNAG 5 cut(s) 426, 996, 1235, 1306, 1746
BstDSI CCRYGG 1 cut(s) 1565
BstF5I GGATG 3 cut(s) 352, 1002, 1916
BstKTI GATC 6 cut(s) 613, 1030, 1101, 1206, 1360, 1735
BstMAI GTCTC 1 cut(s) 1732
BstMBI GATC 6 cut(s) 610, 1027, 1098, 1203, 1357, 1732
BstMWI GCNNNNNNNGC 6 cut(s) 682, 701, 716, 989, 1751, 1922
BstNI CCWGG 4 cut(s) 225, 594, 1397, 1553
BstNSI RCATGY 5 cut(s) 470, 737, 1228, 1812, 1843
BstSCI CCNGG 4 cut(s) 223, 592, 1395, 1551
BstSFI CTRYAG 7 cut(s) 330, 705, 854, 864, 990, 1162, 1613
BstV2I GAAGAC 3 cut(s) 285, 552, 1811
BstX2I RGATCY 2 cut(s) 1027, 1098
BstYI RGATCY 2 cut(s) 1027, 1098
BsuI GTATCC 1 cut(s) 1428
BsuRI GGCC 1 cut(s) 82
BtgI CCRYGG 1 cut(s) 1565
BtsCI GGATG 3 cut(s) 352, 1002, 1916
BtsI GCAGTG 1 cut(s) 1911
BtsIMutI CAGTG 6 cut(s) 64, 735, 1063, 1761, 1771, 1911
BveI ACCTGC 1 cut(s) 1909
Cac8I GCNNGC 2 cut(s) 158, 702
CaiI CAGNNNCTG 1 cut(s) 1088
Cfr13I GGNCC 4 cut(s) 81, 1393, 1704, 1869
CseI GACGC 1 cut(s) 480
Csp6I GTAC 1 cut(s) 1338
CspCI CAANNNNNGTGG 2 cut(s) 645, 680
CviQI GTAC 1 cut(s) 1338
DdeI CTNAG 5 cut(s) 426, 996, 1235, 1306, 1746
DpnI GATC 6 cut(s) 612, 1029, 1100, 1205, 1359, 1734
DpnII GATC 6 cut(s) 610, 1027, 1098, 1203, 1357, 1732
DraI TTTAAA 1 cut(s) 103
DraIII CACNNNGTG 1 cut(s) 730
Eam1104I CTCTTC 1 cut(s) 534
EarI CTCTTC 1 cut(s) 534
Eco130I CCWWGG 2 cut(s) 602, 1565
Eco24I GRGCYC 2 cut(s) 33, 928
Eco47I GGWCC 3 cut(s) 1393, 1704, 1869
Eco57I CTGAAG 2 cut(s) 297, 569
EcoO109I RGGNCCY 1 cut(s) 81
EcoRII CCWGG 4 cut(s) 223, 592, 1395, 1551
EcoT14I CCWWGG 2 cut(s) 602, 1565
EcoT38I GRGCYC 2 cut(s) 33, 928
ErhI CCWWGG 2 cut(s) 602, 1565
FalI AAGNNNNNCTT 4 cut(s) 149, 181, 1796, 1828
FaqI GGGAC 3 cut(s) 211, 552, 1406
FauNDI CATATG 2 cut(s) 940, 1446
FblI GTMKAC 1 cut(s) 287
FokI GGATG 3 cut(s) 359, 989, 1903
FriOI GRGCYC 2 cut(s) 33, 928
FspBI CTAG 1 cut(s) 1724
GsaI CCCAGC 1 cut(s) 1092
HaeIII GGCC 1 cut(s) 82
HapII CCGG 2 cut(s) 1484, 1673
HgaI GACGC 1 cut(s) 480
HincII GTYRAC 2 cut(s) 288, 1188
HindII GTYRAC 2 cut(s) 288, 1188
HindIII AAGCTT 4 cut(s) 170, 581, 626, 907
HinfI GANTC 3 cut(s) 65, 589, 1116
HpaI GTTAAC 1 cut(s) 1188
HpaII CCGG 2 cut(s) 1484, 1673
HphI GGTGA 6 cut(s) 257, 716, 757, 1487, 1868, 1887
Hpy166II GTNNAC 5 cut(s) 288, 777, 878, 1188, 1606
Hpy188III TCNNGA 5 cut(s) 308, 657, 1120, 1456, 1932
Hpy8I GTNNAC 5 cut(s) 288, 777, 878, 1188, 1606
Hpy99I CGWCG 2 cut(s) 496, 1925
HpyAV CCTTC 6 cut(s) 72, 436, 797, 1466, 1638, 1708
HpyCH4III ACNGT 1 cut(s) 755
HpyCH4IV ACGT 3 cut(s) 126, 839, 1539
HpyF10VI GCNNNNNNNGC 6 cut(s) 682, 701, 716, 989, 1751, 1922
HpyF3I CTNAG 5 cut(s) 426, 996, 1235, 1306, 1746
HpySE526I ACGT 3 cut(s) 126, 839, 1539
KspAI GTTAAC 1 cut(s) 1188
Kzo9I GATC 6 cut(s) 610, 1027, 1098, 1203, 1357, 1732
LmnI GCTCC 3 cut(s) 445, 864, 980
LweI GCATC 8 cut(s) 349, 412, 1011, 1207, 1251, 1526, 1654, 1925
MaeI CTAG 1 cut(s) 1724
MaeII ACGT 3 cut(s) 126, 839, 1539
MaeIII GTNAC 4 cut(s) 59, 745, 1580, 1769
MalI GATC 6 cut(s) 612, 1029, 1100, 1205, 1359, 1734
MboI GATC 6 cut(s) 610, 1027, 1098, 1203, 1357, 1732
MboII GAAGA 7 cut(s) 208, 290, 551, 557, 1108, 1816, 1920
MflI RGATCY 2 cut(s) 1027, 1098
MhlI GDGCHC 2 cut(s) 33, 928
MlyI GAGTC 1 cut(s) 59
MroXI GAANNNNTTC 1 cut(s) 1463
MseI TTAA 6 cut(s) 102, 339, 410, 417, 1187, 1782
MslI CAYNNNNRTG 6 cut(s) 240, 969, 1007, 1365, 1726, 1854
MspA1I CMGCKG 3 cut(s) 651, 1085, 1348
MspI CCGG 2 cut(s) 1484, 1673
MspR9I CCNGG 4 cut(s) 225, 594, 1397, 1553
MvaI CCWGG 4 cut(s) 225, 594, 1397, 1553
MwoI GCNNNNNNNGC 6 cut(s) 682, 701, 716, 989, 1751, 1922
NcoI CCATGG 1 cut(s) 1565
NdeI CATATG 2 cut(s) 940, 1446
NdeII GATC 6 cut(s) 610, 1027, 1098, 1203, 1357, 1732
NlaIV GGNNCC 5 cut(s) 10, 83, 982, 1124, 1394
NmuCI GTSAC 4 cut(s) 59, 745, 1580, 1769
NspI RCATGY 5 cut(s) 470, 737, 1228, 1812, 1843
OliI CACNNNNGTG 1 cut(s) 1726
PaqCI CACCTGC 1 cut(s) 1909
PdmI GAANNNNTTC 1 cut(s) 1463
PfeI GAWTC 2 cut(s) 589, 1116
PflMI CCANNNNNTGG 1 cut(s) 1552
PfoI TCCNGGA 1 cut(s) 592
PleI GAGTC 1 cut(s) 59
PpsI GAGTC 1 cut(s) 59
Psp6I CCWGG 4 cut(s) 223, 592, 1395, 1551
PspFI CCCAGC 1 cut(s) 1088
PspGI CCWGG 4 cut(s) 223, 592, 1395, 1551
PspN4I GGNNCC 5 cut(s) 10, 83, 982, 1124, 1394
PspPI GGNCC 4 cut(s) 81, 1393, 1704, 1869
PsrI GAACNNNNNNTAC 2 cut(s) 1000, 1032
PstI CTGCAG 3 cut(s) 709, 994, 1617
PstNI CAGNNNCTG 1 cut(s) 1088
PsuI RGATCY 2 cut(s) 1027, 1098
PvuII CAGCTG 3 cut(s) 651, 1085, 1348
RsaI GTAC 1 cut(s) 1339
RsaNI GTAC 1 cut(s) 1338
RseI CAYNNNNRTG 6 cut(s) 240, 969, 1007, 1365, 1726, 1854
SalI GTCGAC 1 cut(s) 286
SaqAI TTAA 6 cut(s) 102, 339, 410, 417, 1187, 1782
Sau3AI GATC 6 cut(s) 610, 1027, 1098, 1203, 1357, 1732
Sau96I GGNCC 4 cut(s) 81, 1393, 1704, 1869
SchI GAGTC 1 cut(s) 59
ScrFI CCNGG 4 cut(s) 225, 594, 1397, 1553
SduI GDGCHC 2 cut(s) 33, 928
SfaNI GCATC 8 cut(s) 349, 412, 1011, 1207, 1251, 1526, 1654, 1925
SfcI CTRYAG 7 cut(s) 330, 705, 854, 864, 990, 1162, 1613
SinI GGWCC 3 cut(s) 1393, 1704, 1869
SmiMI CAYNNNNRTG 6 cut(s) 240, 969, 1007, 1365, 1726, 1854
SmlI CTYRAG 1 cut(s) 306
SmoI CTYRAG 1 cut(s) 306
SsiI CCGC 1 cut(s) 40
SspMI CTAG 1 cut(s) 1724
StyD4I CCNGG 4 cut(s) 223, 592, 1395, 1551
StyI CCWWGG 2 cut(s) 602, 1565
TaaI ACNGT 1 cut(s) 755
TaiI ACGT 3 cut(s) 129, 842, 1542
TaqI TCGA 3 cut(s) 287, 494, 1323
TaqII GACCGA 2 cut(s) 1692, 1886
TatI WGTACW 1 cut(s) 1337
TfiI GAWTC 2 cut(s) 589, 1116
Tru1I TTAA 6 cut(s) 102, 339, 410, 417, 1187, 1782
Tru9I TTAA 6 cut(s) 102, 339, 410, 417, 1187, 1782
TscAI CASTG 6 cut(s) 64, 735, 1063, 1768, 1778, 1918
TseFI GTSAC 4 cut(s) 59, 745, 1580, 1769
Tsp45I GTSAC 4 cut(s) 59, 745, 1580, 1769
TspDTI ATGAA 9 cut(s) 363, 552, 837, 861, 1062, 1167, 1201, 1383, 1463
TspGWI ACGGA 4 cut(s) 995, 1163, 1568, 1909
TspRI CASTG 6 cut(s) 64, 735, 1063, 1768, 1778, 1918
Van91I CCANNNNNTGG 1 cut(s) 1552
VpaK11BI GGWCC 3 cut(s) 1393, 1704, 1869
XapI RAATTY 4 cut(s) 351, 769, 1169, 1687
XceI RCATGY 5 cut(s) 470, 737, 1228, 1812, 1843
XmiI GTMKAC 1 cut(s) 287
XmnI GAANNNNTTC 1 cut(s) 1463
XspI CTAG 1 cut(s) 1724
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.